Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:143004487-143964442

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174 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf216 5 142990893 to 143112994 122101 - protein coding gene ring finger protein 216
Tssr54347 5 143018170 to 143018177 7 - TSS region transcription start site region 54347
Tssr49635 5 143027815 to 143027820 5 + TSS region transcription start site region 49635
Tssr49636 5 143039003 to 143039064 61 + TSS region transcription start site region 49636
Gm43378 5 143049462 to 143050043 581 - sense intronic lncRNA gene predicted gene 43378
D5Mit62 5 143053482 to 143053687 205 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 62
Tssr54348 5 143056024 to 143056028 4 - TSS region transcription start site region 54348
Gm43380 5 143067653 to 143067872 219 + pseudogene predicted gene 43380
D5Ertd683e 5 143085344 to 143085572 228 DNA segment DNA segment, Chr 5, ERATO Doi 683, expressed
Tssr54349 5 143104866 to 143104892 26 - TSS region transcription start site region 54349
Cpgi16970 5 143112057 to 143113255 1198 CpG island CpG island 16970
Tssr54350 5 143112971 to 143112987 16 - TSS region transcription start site region 54350
Tssr54351 5 143113008 to 143113019 11 - TSS region transcription start site region 54351
Cpgi16971 5 143129055 to 143129325 270 CpG island CpG island 16971
Gm38734 5 143133125 to 143133896 771 + lncRNA gene predicted gene, 38734
Olfr718-ps1 5 143137232 to 143138197 965 - pseudogene olfactory receptor 718, pseudogene 1
Tssr54352 5 143154695 to 143154704 9 - TSS region transcription start site region 54352
Tssr54353 5 143154973 to 143154994 21 - TSS region transcription start site region 54353
Cpgi16972 5 143157119 to 143157672 553 CpG island CpG island 16972
Gm7291 5 143157161 to 143157542 381 - pseudogene predicted gene 7291
Gm44405 5 143157177 to 143157302 125 + miRNA gene predicted gene, 44405
Rbakdn 5 143164779 to 143165751 972 - lincRNA gene RB-associated KRAB zinc finger downstream neighbor (non-protein coding)
Cpgi16973 5 143165427 to 143165956 529 CpG island CpG island 16973
Tssr54354 5 143165676 to 143165715 39 - TSS region transcription start site region 54354
Tssr54355 5 143165719 to 143165733 14 - TSS region transcription start site region 54355
Tssr54356 5 143165736 to 143165769 33 - TSS region transcription start site region 54356
Rbak 5 143172186 to 143180775 8589 - protein coding gene RB-associated KRAB zinc finger
Cpgi16974 5 143180304 to 143181022 718 CpG island CpG island 16974
Tssr54357 5 143180721 to 143180795 74 - TSS region transcription start site region 54357
Tssr54358 5 143180798 to 143180814 16 - TSS region transcription start site region 54358
Tssr49637 5 143180921 to 143180962 41 + TSS region transcription start site region 49637
Tssr49638 5 143181006 to 143181009 3 + TSS region transcription start site region 49638
Tssr49639 5 143181010 to 143181028 18 + TSS region transcription start site region 49639
Spdye4b 5 143181017 to 143205075 24058 + protein coding gene speedy/RINGO cell cycle regulator family, member E4B
Spdye4a 5 143216316 to 143226890 10574 - protein coding gene speedy/RINGO cell cycle regulator family, member E4A
Tssr54359 5 143225876 to 143225892 16 - TSS region transcription start site region 54359
4930448H16Rik 5 143227718 to 143234748 7030 + lincRNA gene RIKEN cDNA 4930448H16 gene
Gm38735 5 143228426 to 143235046 6620 - lncRNA gene predicted gene, 38735
Cpgi16975 5 143234939 to 143235944 1005 CpG island CpG island 16975
Tssr49640 5 143235143 to 143235251 108 + TSS region transcription start site region 49640
Zfp12 5 143235163 to 143248834 13671 + protein coding gene zinc finger protein 12
Tssr49641 5 143240384 to 143240392 8 + TSS region transcription start site region 49641
Tssr54360 5 143247627 to 143247633 6 - TSS region transcription start site region 54360
Zfp316 5 143249697 to 143270022 20325 - protein coding gene zinc finger protein 316
Cpgi16976 5 143252904 to 143255719 2815 CpG island CpG island 16976
Cpgi16977 5 143269054 to 143270456 1402 CpG island CpG island 16977
Tssr54361 5 143269958 to 143270018 60 - TSS region transcription start site region 54361
Tssr49642 5 143270044 to 143270084 40 + TSS region transcription start site region 49642
BC030343 5 143270075 to 143272513 2438 + lincRNA gene cDNA sequence BC030343
Zfp853 5 143287038 to 143293623 6585 - protein coding gene zinc finger protein 853
Cpgi16978 5 143287554 to 143288705 1151 CpG island CpG island 16978
Cpgi16979 5 143292583 to 143294120 1537 CpG island CpG island 16979
D5Mit100 5 143294871 to 143295033 162 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 100
E130309D02Rik 5 143301195 to 143315360 14165 - protein coding gene RIKEN cDNA E130309D02 gene
Cpgi16980 5 143314057 to 143314339 282 CpG island CpG island 16980
Cpgi16981 5 143314571 to 143315802 1231 CpG island CpG island 16981
Gm42501 5 143314839 to 143315864 1025 + unclassified gene predicted gene 42501
Tssr54362 5 143315025 to 143315110 85 - TSS region transcription start site region 54362
Tssr54363 5 143315266 to 143315291 25 - TSS region transcription start site region 54363
Tssr54364 5 143315294 to 143315311 17 - TSS region transcription start site region 54364
Tssr54365 5 143315315 to 143315358 43 - TSS region transcription start site region 54365
Tssr54366 5 143315360 to 143315396 36 - TSS region transcription start site region 54366
Zdhhc4 5 143316489 to 143329252 12763 - protein coding gene zinc finger, DHHC domain containing 4
Tssr54367 5 143320278 to 143320282 4 - TSS region transcription start site region 54367
Cpgi16982 5 143328632 to 143329464 832 CpG island CpG island 16982
Tssr54368 5 143329183 to 143329245 62 - TSS region transcription start site region 54368
Tssr49643 5 143329293 to 143329322 29 + TSS region transcription start site region 49643
0610040B10Rik 5 143329308 to 143332704 3396 + antisense lncRNA gene RIKEN cDNA 0610040B10 gene
Gm43397 5 143334635 to 143335425 790 + lincRNA gene predicted gene 43397
n-TSaga2 5 143347066 to 143347192 126 - tRNA gene nuclear encoded tRNA serine 2 (anticodon AGA)
D5Mit67 5 143349572 to 143349683 111 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 67
Tssr49644 5 143353703 to 143353710 7 + TSS region transcription start site region 49644
Grid2ip 5 143357338 to 143391798 34460 + protein coding gene glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1
Cpgi16983 5 143357520 to 143358018 498 CpG island CpG island 16983
Tssr49645 5 143363890 to 143363919 29 + TSS region transcription start site region 49645
Cpgi16984 5 143364058 to 143364620 562 CpG island CpG island 16984
Cpgi16985 5 143369839 to 143370664 825 CpG island CpG island 16985
Tssr49646 5 143370061 to 143370079 18 + TSS region transcription start site region 49646
Tssr49647 5 143370104 to 143370118 14 + TSS region transcription start site region 49647
Cpgi16986 5 143372558 to 143373693 1135 CpG island CpG island 16986
Gm38736 5 143373215 to 143375252 2037 - lncRNA gene predicted gene, 38736
Cpgi16987 5 143375252 to 143375756 504 CpG island CpG island 16987
Tssr54369 5 143375701 to 143375737 36 - TSS region transcription start site region 54369
Cpgi16988 5 143381635 to 143381950 315 CpG island CpG island 16988
Cpgi16989 5 143387134 to 143387627 493 CpG island CpG island 16989
Gm20635 5 143391789 to 143403695 11906 - antisense lncRNA gene predicted gene 20635
Gm42504 5 143393689 to 143397457 3768 - lincRNA gene predicted gene 42504
Gm43398 5 143395503 to 143398244 2741 + unclassified gene predicted gene 43398
9530056K15Rik 5 143397248 to 143399563 2315 - unclassified gene RIKEN cDNA 9530056K15 gene
Cpgi16990 5 143403405 to 143404652 1247 CpG island CpG island 16990
Tssr49648 5 143403787 to 143403815 28 + TSS region transcription start site region 49648
Tssr49649 5 143403819 to 143403882 63 + TSS region transcription start site region 49649
Kdelr2 5 143403838 to 143421901 18063 + protein coding gene KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
Tssr54370 5 143405240 to 143405258 18 - TSS region transcription start site region 54370
Tssr49650 5 143407064 to 143407067 3 + TSS region transcription start site region 49650
Tssr49651 5 143420995 to 143421010 15 + TSS region transcription start site region 49651
Tssr49652 5 143421318 to 143421319 1 + TSS region transcription start site region 49652
Gm4870 5 143438393 to 143439643 1250 + pseudogene predicted gene 4870
Gm9497 5 143456903 to 143457440 537 + pseudogene predicted gene 9497
Cpgi16991 5 143464420 to 143465110 690 CpG island CpG island 16991
Daglb 5 143464487 to 143504442 39955 + protein coding gene diacylglycerol lipase, beta
Tssr49653 5 143464525 to 143464536 11 + TSS region transcription start site region 49653
Tssr49654 5 143464574 to 143464652 78 + TSS region transcription start site region 49654
Tssr49655 5 143464659 to 143464670 11 + TSS region transcription start site region 49655
Tssr49656 5 143471115 to 143471126 11 + TSS region transcription start site region 49656
Tssr49657 5 143471238 to 143471264 26 + TSS region transcription start site region 49657
Tssr49658 5 143472935 to 143472944 9 + TSS region transcription start site region 49658
Tssr49659 5 143474666 to 143474701 35 + TSS region transcription start site region 49659
Tssr49660 5 143482004 to 143482008 4 + TSS region transcription start site region 49660
Tssr49661 5 143503412 to 143503431 19 + TSS region transcription start site region 49661
Tssr49662 5 143503545 to 143503566 21 + TSS region transcription start site region 49662
Tssr49663 5 143503568 to 143503588 20 + TSS region transcription start site region 49663
Tssr49664 5 143503632 to 143503635 3 + TSS region transcription start site region 49664
Rac1 5 143505481 to 143528117 22636 - protein coding gene Rac family small GTPase 1
Tssr54371 5 143505939 to 143505943 4 - TSS region transcription start site region 54371
Tssr54372 5 143506111 to 143506138 27 - TSS region transcription start site region 54372
Tssr54373 5 143506198 to 143506209 11 - TSS region transcription start site region 54373
Tssr54374 5 143506590 to 143506603 13 - TSS region transcription start site region 54374
Tssr54375 5 143517195 to 143517233 38 - TSS region transcription start site region 54375
Gm42502 5 143525660 to 143526748 1088 + unclassified gene predicted gene 42502
Cpgi16992 5 143526725 to 143527097 372 CpG island CpG island 16992
Cpgi16993 5 143527322 to 143528707 1385 CpG island CpG island 16993
Tssr54376 5 143527977 to 143528010 33 - TSS region transcription start site region 54376
Cpgi16994 5 143548357 to 143549284 927 CpG island CpG island 16994
Tssr49665 5 143548700 to 143548756 56 + TSS region transcription start site region 49665
Fam220a 5 143548706 to 143564525 15819 + protein coding gene family with sequence similarity 220, member A
Tssr1742 5 143562157 to 143562164 7 + TSS region transcription start site region 1742
Tssr54377 5 143613421 to 143613434 13 - TSS region transcription start site region 54377
Cpgi16995 5 143622174 to 143623171 997 CpG island CpG island 16995
Tssr49666 5 143622440 to 143622459 19 + TSS region transcription start site region 49666
Cyth3 5 143622447 to 143710250 87803 + protein coding gene cytohesin 3
Tssr49667 5 143622466 to 143622548 82 + TSS region transcription start site region 49667
Tssr49668 5 143622555 to 143622571 16 + TSS region transcription start site region 49668
Tssr49669 5 143651222 to 143651246 24 + TSS region transcription start site region 49669
Usp42 5 143710325 to 143732280 21955 - protein coding gene ubiquitin specific peptidase 42
Cpgi16996 5 143731183 to 143733005 1822 CpG island CpG island 16996
Tssr54378 5 143732215 to 143732272 57 - TSS region transcription start site region 54378
Tssr54379 5 143732273 to 143732316 43 - TSS region transcription start site region 54379
Gm38737 5 143732455 to 143735458 3003 + lncRNA gene predicted gene, 38737
Tssr54380 5 143732464 to 143732475 11 - TSS region transcription start site region 54380
Tssr54381 5 143732478 to 143732520 42 - TSS region transcription start site region 54381
Tssr49670 5 143732585 to 143732616 31 + TSS region transcription start site region 49670
Tssr49671 5 143732633 to 143732643 10 + TSS region transcription start site region 49671
D5Mit224 5 143746046 to 143746176 130 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 224
Tssr49672 5 143755741 to 143755747 6 + TSS region transcription start site region 49672
Cpgi16997 5 143758068 to 143758448 380 CpG island CpG island 16997
Tssr49673 5 143758293 to 143758363 70 + TSS region transcription start site region 49673
D130017N08Rik 5 143758354 to 143764942 6588 + lincRNA gene RIKEN cDNA D130017N08 gene
Tssr49674 5 143758369 to 143758384 15 + TSS region transcription start site region 49674
Tssr49675 5 143758391 to 143758400 9 + TSS region transcription start site region 49675
Tssr54382 5 143759752 to 143759794 42 - TSS region transcription start site region 54382
Gm42503 5 143770040 to 143773745 3705 + unclassified gene predicted gene 42503
Cpgi16998 5 143817464 to 143818312 848 CpG island CpG island 16998
Tssr49676 5 143817786 to 143817818 32 + TSS region transcription start site region 49676
Eif2ak1 5 143817792 to 143902717 84925 + protein coding gene eukaryotic translation initiation factor 2 alpha kinase 1
Tssr49677 5 143817819 to 143817843 24 + TSS region transcription start site region 49677
Tssr49678 5 143817849 to 143817865 16 + TSS region transcription start site region 49678
Ankrd61 5 143890637 to 143895067 4430 - protein coding gene ankyrin repeat domain 61
Tssr49679 5 143890644 to 143890649 5 + TSS region transcription start site region 49679
Tssr54383 5 143894986 to 143894993 7 - TSS region transcription start site region 54383
Tssr54384 5 143895025 to 143895075 50 - TSS region transcription start site region 54384
Tssr54385 5 143895078 to 143895091 13 - TSS region transcription start site region 54385
Tssr49680 5 143902087 to 143902114 27 + TSS region transcription start site region 49680
Tssr49681 5 143902242 to 143902268 26 + TSS region transcription start site region 49681
Aimp2 5 143902704 to 143909839 7135 - protein coding gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
Cpgi16999 5 143909293 to 143910367 1074 CpG island CpG island 16999
Tssr54386 5 143909782 to 143909841 59 - TSS region transcription start site region 54386
Pms2 5 143909964 to 143933968 24004 + protein coding gene PMS1 homolog2, mismatch repair system component
Tssr49682 5 143909973 to 143910047 74 + TSS region transcription start site region 49682
Gm42421 5 143928175 to 143937309 9134 + protein coding gene predicted gene, 42421
Tssr49683 5 143933029 to 143933047 18 + TSS region transcription start site region 49683
Rsph10b 5 143933035 to 143985719 52684 + protein coding gene radial spoke head 10 homolog B (Chlamydomonas)
Tssr49684 5 143933059 to 143933077 18 + TSS region transcription start site region 49684
Gm17135 5 143950379 to 143981212 30833 - antisense lncRNA gene predicted gene 17135