Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:142933125-143333896

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16966 5 142936419 to 142936589 170 CpG island CpG island 16966
Cpgi16967 5 142959989 to 142961524 1535 CpG island CpG island 16967
Tssr49613 5 142960348 to 142960363 15 + TSS region transcription start site region 49613
Fscn1 5 142960355 to 142973189 12834 + protein coding gene fascin actin-bundling protein 1
Tssr49614 5 142960477 to 142960493 16 + TSS region transcription start site region 49614
Tssr49615 5 142960958 to 142960990 32 + TSS region transcription start site region 49615
Tssr49616 5 142961000 to 142961020 20 + TSS region transcription start site region 49616
Tssr49617 5 142961188 to 142961200 12 + TSS region transcription start site region 49617
Cpgi16968 5 142961799 to 142962514 715 CpG island CpG island 16968
Tssr49618 5 142963678 to 142963689 11 + TSS region transcription start site region 49618
Tssr49619 5 142970514 to 142970526 12 + TSS region transcription start site region 49619
Tssr49620 5 142970541 to 142970562 21 + TSS region transcription start site region 49620
Tssr49621 5 142970569 to 142970592 23 + TSS region transcription start site region 49621
Tssr49622 5 142972087 to 142972100 13 + TSS region transcription start site region 49622
Tssr49623 5 142972115 to 142972133 18 + TSS region transcription start site region 49623
Tssr49624 5 142972242 to 142972258 16 + TSS region transcription start site region 49624
Tssr49625 5 142972293 to 142972311 18 + TSS region transcription start site region 49625
Tssr49626 5 142972335 to 142972354 19 + TSS region transcription start site region 49626
Tssr49627 5 142972367 to 142972393 26 + TSS region transcription start site region 49627
Tssr49628 5 142972415 to 142972433 18 + TSS region transcription start site region 49628
Tssr49629 5 142972440 to 142972496 56 + TSS region transcription start site region 49629
Tssr49630 5 142972684 to 142972726 42 + TSS region transcription start site region 49630
Tssr49631 5 142972774 to 142972781 7 + TSS region transcription start site region 49631
Tssr49632 5 142972844 to 142972870 26 + TSS region transcription start site region 49632
Tssr49633 5 142972879 to 142972892 13 + TSS region transcription start site region 49633
Tssr49634 5 142973027 to 142973051 24 + TSS region transcription start site region 49634
Cpgi16969 5 142974766 to 142974994 228 CpG island CpG island 16969
Rnf216 5 142990893 to 143112994 122101 - protein coding gene ring finger protein 216
Tssr54347 5 143018170 to 143018177 7 - TSS region transcription start site region 54347
Tssr49635 5 143027815 to 143027820 5 + TSS region transcription start site region 49635
Tssr49636 5 143039003 to 143039064 61 + TSS region transcription start site region 49636
Gm43378 5 143049462 to 143050043 581 - sense intronic lncRNA gene predicted gene 43378
D5Mit62 5 143053482 to 143053687 205 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 62
Tssr54348 5 143056024 to 143056028 4 - TSS region transcription start site region 54348
Gm43380 5 143067653 to 143067872 219 + pseudogene predicted gene 43380
D5Ertd683e 5 143085344 to 143085572 228 DNA segment DNA segment, Chr 5, ERATO Doi 683, expressed
Tssr54349 5 143104866 to 143104892 26 - TSS region transcription start site region 54349
Cpgi16970 5 143112057 to 143113255 1198 CpG island CpG island 16970
Tssr54350 5 143112971 to 143112987 16 - TSS region transcription start site region 54350
Tssr54351 5 143113008 to 143113019 11 - TSS region transcription start site region 54351
Cpgi16971 5 143129055 to 143129325 270 CpG island CpG island 16971
Gm38734 5 143133125 to 143133896 771 + lncRNA gene predicted gene, 38734
Olfr718-ps1 5 143137232 to 143138197 965 - pseudogene olfactory receptor 718, pseudogene 1
Tssr54352 5 143154695 to 143154704 9 - TSS region transcription start site region 54352
Tssr54353 5 143154973 to 143154994 21 - TSS region transcription start site region 54353
Cpgi16972 5 143157119 to 143157672 553 CpG island CpG island 16972
Gm7291 5 143157161 to 143157542 381 - pseudogene predicted gene 7291
Gm44405 5 143157177 to 143157302 125 + miRNA gene predicted gene, 44405
Rbakdn 5 143164779 to 143165751 972 - lincRNA gene RB-associated KRAB zinc finger downstream neighbor (non-protein coding)
Cpgi16973 5 143165427 to 143165956 529 CpG island CpG island 16973
Tssr54354 5 143165676 to 143165715 39 - TSS region transcription start site region 54354
Tssr54355 5 143165719 to 143165733 14 - TSS region transcription start site region 54355
Tssr54356 5 143165736 to 143165769 33 - TSS region transcription start site region 54356
Rbak 5 143172186 to 143180775 8589 - protein coding gene RB-associated KRAB zinc finger
Cpgi16974 5 143180304 to 143181022 718 CpG island CpG island 16974
Tssr54357 5 143180721 to 143180795 74 - TSS region transcription start site region 54357
Tssr54358 5 143180798 to 143180814 16 - TSS region transcription start site region 54358
Tssr49637 5 143180921 to 143180962 41 + TSS region transcription start site region 49637
Tssr49638 5 143181006 to 143181009 3 + TSS region transcription start site region 49638
Tssr49639 5 143181010 to 143181028 18 + TSS region transcription start site region 49639
Spdye4b 5 143181017 to 143205075 24058 + protein coding gene speedy/RINGO cell cycle regulator family, member E4B
Spdye4a 5 143216316 to 143226890 10574 - protein coding gene speedy/RINGO cell cycle regulator family, member E4A
Tssr54359 5 143225876 to 143225892 16 - TSS region transcription start site region 54359
4930448H16Rik 5 143227718 to 143234748 7030 + lincRNA gene RIKEN cDNA 4930448H16 gene
Gm38735 5 143228426 to 143235046 6620 - lncRNA gene predicted gene, 38735
Cpgi16975 5 143234939 to 143235944 1005 CpG island CpG island 16975
Tssr49640 5 143235143 to 143235251 108 + TSS region transcription start site region 49640
Zfp12 5 143235163 to 143248834 13671 + protein coding gene zinc finger protein 12
Tssr49641 5 143240384 to 143240392 8 + TSS region transcription start site region 49641
Tssr54360 5 143247627 to 143247633 6 - TSS region transcription start site region 54360
Zfp316 5 143249697 to 143270022 20325 - protein coding gene zinc finger protein 316
Cpgi16976 5 143252904 to 143255719 2815 CpG island CpG island 16976
Cpgi16977 5 143269054 to 143270456 1402 CpG island CpG island 16977
Tssr54361 5 143269958 to 143270018 60 - TSS region transcription start site region 54361
Tssr49642 5 143270044 to 143270084 40 + TSS region transcription start site region 49642
BC030343 5 143270075 to 143272513 2438 + lincRNA gene cDNA sequence BC030343
Zfp853 5 143287038 to 143293623 6585 - protein coding gene zinc finger protein 853
Cpgi16978 5 143287554 to 143288705 1151 CpG island CpG island 16978
Cpgi16979 5 143292583 to 143294120 1537 CpG island CpG island 16979
D5Mit100 5 143294871 to 143295033 162 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 100
E130309D02Rik 5 143301195 to 143315360 14165 - protein coding gene RIKEN cDNA E130309D02 gene
Cpgi16980 5 143314057 to 143314339 282 CpG island CpG island 16980
Cpgi16981 5 143314571 to 143315802 1231 CpG island CpG island 16981
Gm42501 5 143314839 to 143315864 1025 + unclassified gene predicted gene 42501
Tssr54362 5 143315025 to 143315110 85 - TSS region transcription start site region 54362
Tssr54363 5 143315266 to 143315291 25 - TSS region transcription start site region 54363
Tssr54364 5 143315294 to 143315311 17 - TSS region transcription start site region 54364
Tssr54365 5 143315315 to 143315358 43 - TSS region transcription start site region 54365
Tssr54366 5 143315360 to 143315396 36 - TSS region transcription start site region 54366
Zdhhc4 5 143316489 to 143329252 12763 - protein coding gene zinc finger, DHHC domain containing 4
Tssr54367 5 143320278 to 143320282 4 - TSS region transcription start site region 54367
Cpgi16982 5 143328632 to 143329464 832 CpG island CpG island 16982
Tssr54368 5 143329183 to 143329245 62 - TSS region transcription start site region 54368
Tssr49643 5 143329293 to 143329322 29 + TSS region transcription start site region 49643
0610040B10Rik 5 143329308 to 143332704 3396 + antisense lncRNA gene RIKEN cDNA 0610040B10 gene