Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:142870176-145331155

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486 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Xiaf2 5 126090176 to 144640558 18550382 heritable phenotypic marker X inactivation autosomal factor 2
Fbxl18 5 142871787 to 142895421 23634 - protein coding gene F-box and leucine-rich repeat protein 18
D430018E03Rik 5 142874077 to 142878373 4296 - sense intronic lncRNA gene RIKEN cDNA D430018E03 gene
Cpgi16962 5 142878707 to 142878926 219 CpG island CpG island 16962
Cpgi16963 5 142894771 to 142895590 819 CpG island CpG island 16963
Tssr54310 5 142895161 to 142895229 68 - TSS region transcription start site region 54310
Tssr54311 5 142895233 to 142895242 9 - TSS region transcription start site region 54311
Tssr49597 5 142895286 to 142895349 63 + TSS region transcription start site region 49597
Gm38733 5 142895395 to 142897924 2529 + lncRNA gene predicted gene, 38733
Tssr54312 5 142901397 to 142901399 2 - TSS region transcription start site region 54312
Actb 5 142903115 to 142906754 3639 - protein coding gene actin, beta
Tssr49598 5 142903116 to 142903140 24 + TSS region transcription start site region 49598
Tssr54313 5 142903140 to 142903169 29 - TSS region transcription start site region 54313
Tssr54314 5 142903253 to 142903287 34 - TSS region transcription start site region 54314
Tssr54315 5 142903289 to 142903309 20 - TSS region transcription start site region 54315
Tssr54316 5 142903321 to 142903333 12 - TSS region transcription start site region 54316
Tssr54317 5 142903391 to 142903419 28 - TSS region transcription start site region 54317
Tssr54318 5 142903484 to 142903507 23 - TSS region transcription start site region 54318
Tssr54319 5 142903526 to 142903575 49 - TSS region transcription start site region 54319
Tssr54320 5 142903601 to 142903613 12 - TSS region transcription start site region 54320
Tssr54321 5 142903647 to 142903651 4 - TSS region transcription start site region 54321
Tssr49599 5 142903684 to 142903723 39 + TSS region transcription start site region 49599
Tssr54322 5 142903705 to 142903730 25 - TSS region transcription start site region 54322
Tssr49600 5 142903764 to 142903787 23 + TSS region transcription start site region 49600
Tssr54323 5 142903794 to 142903800 6 - TSS region transcription start site region 54323
Tssr54324 5 142903801 to 142903850 49 - TSS region transcription start site region 54324
Tssr54325 5 142903909 to 142903932 23 - TSS region transcription start site region 54325
Tssr49601 5 142904130 to 142904174 44 + TSS region transcription start site region 49601
Tssr49602 5 142904175 to 142904187 12 + TSS region transcription start site region 49602
Tssr54326 5 142904176 to 142904207 31 - TSS region transcription start site region 54326
Tssr49603 5 142904353 to 142904383 30 + TSS region transcription start site region 49603
Tssr54327 5 142904383 to 142904415 32 - TSS region transcription start site region 54327
Tssr49604 5 142904450 to 142904470 20 + TSS region transcription start site region 49604
Tssr54328 5 142904474 to 142904510 36 - TSS region transcription start site region 54328
Tssr49605 5 142904513 to 142904547 34 + TSS region transcription start site region 49605
Tssr54329 5 142904563 to 142904601 38 - TSS region transcription start site region 54329
Tssr54330 5 142904637 to 142904648 11 - TSS region transcription start site region 54330
Tssr54331 5 142904698 to 142904712 14 - TSS region transcription start site region 54331
Tssr49606 5 142904700 to 142904750 50 + TSS region transcription start site region 49606
Tssr54332 5 142904744 to 142904783 39 - TSS region transcription start site region 54332
Tssr54333 5 142905128 to 142905153 25 - TSS region transcription start site region 54333
Tssr54334 5 142905169 to 142905181 12 - TSS region transcription start site region 54334
Tssr54335 5 142905312 to 142905340 28 - TSS region transcription start site region 54335
Tssr49607 5 142905347 to 142905359 12 + TSS region transcription start site region 49607
Tssr54336 5 142905379 to 142905401 22 - TSS region transcription start site region 54336
Tssr49608 5 142905404 to 142905440 36 + TSS region transcription start site region 49608
Tssr54337 5 142905406 to 142905418 12 - TSS region transcription start site region 54337
Cpgi16964 5 142905427 to 142907197 1770 CpG island CpG island 16964
Tssr54338 5 142905442 to 142905480 38 - TSS region transcription start site region 54338
Tssr54339 5 142905593 to 142905625 32 - TSS region transcription start site region 54339
Tssr54340 5 142905696 to 142905718 22 - TSS region transcription start site region 54340
Tssr54341 5 142905735 to 142905753 18 - TSS region transcription start site region 54341
Tssr54342 5 142905762 to 142905796 34 - TSS region transcription start site region 54342
Tssr54343 5 142905816 to 142905832 16 - TSS region transcription start site region 54343
Tssr54344 5 142905928 to 142905978 50 - TSS region transcription start site region 54344
Tssr1738 5 142905992 to 142905999 7 - TSS region transcription start site region 1738
Tssr1739 5 142906009 to 142906031 22 - TSS region transcription start site region 1739
Tssr54345 5 142906721 to 142906726 5 - TSS region transcription start site region 54345
Tssr1740 5 142907965 to 142907982 17 - TSS region transcription start site region 1740
Tssr49609 5 142909313 to 142909359 46 + TSS region transcription start site region 49609
Tssr1741 5 142909982 to 142909992 10 + TSS region transcription start site region 1741
Tssr49610 5 142920999 to 142921011 12 + TSS region transcription start site region 49610
Cpgi16965 5 142928939 to 142929664 725 CpG island CpG island 16965
Tssr54346 5 142929088 to 142929127 39 - TSS region transcription start site region 54346
Tssr49611 5 142929213 to 142929223 10 + TSS region transcription start site region 49611
Tssr49612 5 142929773 to 142929778 5 + TSS region transcription start site region 49612
Cpgi16966 5 142936419 to 142936589 170 CpG island CpG island 16966
Cpgi16967 5 142959989 to 142961524 1535 CpG island CpG island 16967
Tssr49613 5 142960348 to 142960363 15 + TSS region transcription start site region 49613
Fscn1 5 142960355 to 142973189 12834 + protein coding gene fascin actin-bundling protein 1
Tssr49614 5 142960477 to 142960493 16 + TSS region transcription start site region 49614
Tssr49615 5 142960958 to 142960990 32 + TSS region transcription start site region 49615
Tssr49616 5 142961000 to 142961020 20 + TSS region transcription start site region 49616
Tssr49617 5 142961188 to 142961200 12 + TSS region transcription start site region 49617
Cpgi16968 5 142961799 to 142962514 715 CpG island CpG island 16968
Tssr49618 5 142963678 to 142963689 11 + TSS region transcription start site region 49618
Tssr49619 5 142970514 to 142970526 12 + TSS region transcription start site region 49619
Tssr49620 5 142970541 to 142970562 21 + TSS region transcription start site region 49620
Tssr49621 5 142970569 to 142970592 23 + TSS region transcription start site region 49621
Tssr49622 5 142972087 to 142972100 13 + TSS region transcription start site region 49622
Tssr49623 5 142972115 to 142972133 18 + TSS region transcription start site region 49623
Tssr49624 5 142972242 to 142972258 16 + TSS region transcription start site region 49624
Tssr49625 5 142972293 to 142972311 18 + TSS region transcription start site region 49625
Tssr49626 5 142972335 to 142972354 19 + TSS region transcription start site region 49626
Tssr49627 5 142972367 to 142972393 26 + TSS region transcription start site region 49627
Tssr49628 5 142972415 to 142972433 18 + TSS region transcription start site region 49628
Tssr49629 5 142972440 to 142972496 56 + TSS region transcription start site region 49629
Tssr49630 5 142972684 to 142972726 42 + TSS region transcription start site region 49630
Tssr49631 5 142972774 to 142972781 7 + TSS region transcription start site region 49631
Tssr49632 5 142972844 to 142972870 26 + TSS region transcription start site region 49632
Tssr49633 5 142972879 to 142972892 13 + TSS region transcription start site region 49633
Tssr49634 5 142973027 to 142973051 24 + TSS region transcription start site region 49634
Cpgi16969 5 142974766 to 142974994 228 CpG island CpG island 16969
Rnf216 5 142990893 to 143112994 122101 - protein coding gene ring finger protein 216
Tssr54347 5 143018170 to 143018177 7 - TSS region transcription start site region 54347
Tssr49635 5 143027815 to 143027820 5 + TSS region transcription start site region 49635
Tssr49636 5 143039003 to 143039064 61 + TSS region transcription start site region 49636
Gm43378 5 143049462 to 143050043 581 - sense intronic lncRNA gene predicted gene 43378
D5Mit62 5 143053482 to 143053687 205 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 62
Tssr54348 5 143056024 to 143056028 4 - TSS region transcription start site region 54348
Gm43380 5 143067653 to 143067872 219 + pseudogene predicted gene 43380
D5Ertd683e 5 143085344 to 143085572 228 DNA segment DNA segment, Chr 5, ERATO Doi 683, expressed
Tssr54349 5 143104866 to 143104892 26 - TSS region transcription start site region 54349
Cpgi16970 5 143112057 to 143113255 1198 CpG island CpG island 16970
Tssr54350 5 143112971 to 143112987 16 - TSS region transcription start site region 54350
Tssr54351 5 143113008 to 143113019 11 - TSS region transcription start site region 54351
Cpgi16971 5 143129055 to 143129325 270 CpG island CpG island 16971
Gm38734 5 143133125 to 143133896 771 + lncRNA gene predicted gene, 38734
Olfr718-ps1 5 143137232 to 143138197 965 - pseudogene olfactory receptor 718, pseudogene 1
Tssr54352 5 143154695 to 143154704 9 - TSS region transcription start site region 54352
Tssr54353 5 143154973 to 143154994 21 - TSS region transcription start site region 54353
Cpgi16972 5 143157119 to 143157672 553 CpG island CpG island 16972
Gm7291 5 143157161 to 143157542 381 - pseudogene predicted gene 7291
Gm44405 5 143157177 to 143157302 125 + miRNA gene predicted gene, 44405
Rbakdn 5 143164779 to 143165751 972 - lincRNA gene RB-associated KRAB zinc finger downstream neighbor (non-protein coding)
Cpgi16973 5 143165427 to 143165956 529 CpG island CpG island 16973
Tssr54354 5 143165676 to 143165715 39 - TSS region transcription start site region 54354
Tssr54355 5 143165719 to 143165733 14 - TSS region transcription start site region 54355
Tssr54356 5 143165736 to 143165769 33 - TSS region transcription start site region 54356
Rbak 5 143172186 to 143180775 8589 - protein coding gene RB-associated KRAB zinc finger
Cpgi16974 5 143180304 to 143181022 718 CpG island CpG island 16974
Tssr54357 5 143180721 to 143180795 74 - TSS region transcription start site region 54357
Tssr54358 5 143180798 to 143180814 16 - TSS region transcription start site region 54358
Tssr49637 5 143180921 to 143180962 41 + TSS region transcription start site region 49637
Tssr49638 5 143181006 to 143181009 3 + TSS region transcription start site region 49638
Tssr49639 5 143181010 to 143181028 18 + TSS region transcription start site region 49639
Spdye4b 5 143181017 to 143205075 24058 + protein coding gene speedy/RINGO cell cycle regulator family, member E4B
Spdye4a 5 143216316 to 143226890 10574 - protein coding gene speedy/RINGO cell cycle regulator family, member E4A
Tssr54359 5 143225876 to 143225892 16 - TSS region transcription start site region 54359
4930448H16Rik 5 143227718 to 143234748 7030 + lincRNA gene RIKEN cDNA 4930448H16 gene
Gm38735 5 143228426 to 143235046 6620 - lncRNA gene predicted gene, 38735
Cpgi16975 5 143234939 to 143235944 1005 CpG island CpG island 16975
Tssr49640 5 143235143 to 143235251 108 + TSS region transcription start site region 49640
Zfp12 5 143235163 to 143248834 13671 + protein coding gene zinc finger protein 12
Tssr49641 5 143240384 to 143240392 8 + TSS region transcription start site region 49641
Tssr54360 5 143247627 to 143247633 6 - TSS region transcription start site region 54360
Zfp316 5 143249697 to 143270022 20325 - protein coding gene zinc finger protein 316
Cpgi16976 5 143252904 to 143255719 2815 CpG island CpG island 16976
Cpgi16977 5 143269054 to 143270456 1402 CpG island CpG island 16977
Tssr54361 5 143269958 to 143270018 60 - TSS region transcription start site region 54361
Tssr49642 5 143270044 to 143270084 40 + TSS region transcription start site region 49642
BC030343 5 143270075 to 143272513 2438 + lincRNA gene cDNA sequence BC030343
Zfp853 5 143287038 to 143293623 6585 - protein coding gene zinc finger protein 853
Cpgi16978 5 143287554 to 143288705 1151 CpG island CpG island 16978
Cpgi16979 5 143292583 to 143294120 1537 CpG island CpG island 16979
D5Mit100 5 143294871 to 143295033 162 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 100
E130309D02Rik 5 143301195 to 143315360 14165 - protein coding gene RIKEN cDNA E130309D02 gene
Cpgi16980 5 143314057 to 143314339 282 CpG island CpG island 16980
Cpgi16981 5 143314571 to 143315802 1231 CpG island CpG island 16981
Gm42501 5 143314839 to 143315864 1025 + unclassified gene predicted gene 42501
Tssr54362 5 143315025 to 143315110 85 - TSS region transcription start site region 54362
Tssr54363 5 143315266 to 143315291 25 - TSS region transcription start site region 54363
Tssr54364 5 143315294 to 143315311 17 - TSS region transcription start site region 54364
Tssr54365 5 143315315 to 143315358 43 - TSS region transcription start site region 54365
Tssr54366 5 143315360 to 143315396 36 - TSS region transcription start site region 54366
Zdhhc4 5 143316489 to 143329252 12763 - protein coding gene zinc finger, DHHC domain containing 4
Tssr54367 5 143320278 to 143320282 4 - TSS region transcription start site region 54367
Cpgi16982 5 143328632 to 143329464 832 CpG island CpG island 16982
Tssr54368 5 143329183 to 143329245 62 - TSS region transcription start site region 54368
Tssr49643 5 143329293 to 143329322 29 + TSS region transcription start site region 49643
0610040B10Rik 5 143329308 to 143332704 3396 + antisense lncRNA gene RIKEN cDNA 0610040B10 gene
Gm43397 5 143334635 to 143335425 790 + lincRNA gene predicted gene 43397
n-TSaga2 5 143347066 to 143347192 126 - tRNA gene nuclear encoded tRNA serine 2 (anticodon AGA)
D5Mit67 5 143349572 to 143349683 111 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 67
Tssr49644 5 143353703 to 143353710 7 + TSS region transcription start site region 49644
Grid2ip 5 143357338 to 143391798 34460 + protein coding gene glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1
Cpgi16983 5 143357520 to 143358018 498 CpG island CpG island 16983
Tssr49645 5 143363890 to 143363919 29 + TSS region transcription start site region 49645
Cpgi16984 5 143364058 to 143364620 562 CpG island CpG island 16984
Cpgi16985 5 143369839 to 143370664 825 CpG island CpG island 16985
Tssr49646 5 143370061 to 143370079 18 + TSS region transcription start site region 49646
Tssr49647 5 143370104 to 143370118 14 + TSS region transcription start site region 49647
Cpgi16986 5 143372558 to 143373693 1135 CpG island CpG island 16986
Gm38736 5 143373215 to 143375252 2037 - lncRNA gene predicted gene, 38736
Cpgi16987 5 143375252 to 143375756 504 CpG island CpG island 16987
Tssr54369 5 143375701 to 143375737 36 - TSS region transcription start site region 54369
Cpgi16988 5 143381635 to 143381950 315 CpG island CpG island 16988
Cpgi16989 5 143387134 to 143387627 493 CpG island CpG island 16989
Gm20635 5 143391789 to 143403695 11906 - antisense lncRNA gene predicted gene 20635
Gm42504 5 143393689 to 143397457 3768 - lincRNA gene predicted gene 42504
Gm43398 5 143395503 to 143398244 2741 + unclassified gene predicted gene 43398
9530056K15Rik 5 143397248 to 143399563 2315 - unclassified gene RIKEN cDNA 9530056K15 gene
Cpgi16990 5 143403405 to 143404652 1247 CpG island CpG island 16990
Tssr49648 5 143403787 to 143403815 28 + TSS region transcription start site region 49648
Tssr49649 5 143403819 to 143403882 63 + TSS region transcription start site region 49649
Kdelr2 5 143403838 to 143421901 18063 + protein coding gene KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
Tssr54370 5 143405240 to 143405258 18 - TSS region transcription start site region 54370
Tssr49650 5 143407064 to 143407067 3 + TSS region transcription start site region 49650
Tssr49651 5 143420995 to 143421010 15 + TSS region transcription start site region 49651
Tssr49652 5 143421318 to 143421319 1 + TSS region transcription start site region 49652
Gm4870 5 143438393 to 143439643 1250 + pseudogene predicted gene 4870
Gm9497 5 143456903 to 143457440 537 + pseudogene predicted gene 9497
Cpgi16991 5 143464420 to 143465110 690 CpG island CpG island 16991
Daglb 5 143464487 to 143504442 39955 + protein coding gene diacylglycerol lipase, beta
Tssr49653 5 143464525 to 143464536 11 + TSS region transcription start site region 49653
Tssr49654 5 143464574 to 143464652 78 + TSS region transcription start site region 49654
Tssr49655 5 143464659 to 143464670 11 + TSS region transcription start site region 49655
Tssr49656 5 143471115 to 143471126 11 + TSS region transcription start site region 49656
Tssr49657 5 143471238 to 143471264 26 + TSS region transcription start site region 49657
Tssr49658 5 143472935 to 143472944 9 + TSS region transcription start site region 49658