Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:142669545-142969924

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wipi2 5 142629535 to 142669672 40137 + protein coding gene WD repeat domain, phosphoinositide interacting 2
Gm40352 5 142671869 to 142693356 21487 - lncRNA gene predicted gene, 40352
Cpgi16953 5 142692337 to 142692537 200 CpG island CpG island 16953
Tssr49584 5 142692457 to 142692481 24 + TSS region transcription start site region 49584
Tssr49585 5 142692482 to 142692502 20 + TSS region transcription start site region 49585
Slc29a4 5 142692512 to 142722490 29978 + protein coding gene solute carrier family 29 (nucleoside transporters), member 4
Tssr49586 5 142694098 to 142694102 4 + TSS region transcription start site region 49586
Cpgi16954 5 142701581 to 142702718 1137 CpG island CpG island 16954
Tssr49587 5 142702091 to 142702153 62 + TSS region transcription start site region 49587
Tnrc18 5 142724661 to 142817662 93001 - protein coding gene trinucleotide repeat containing 18
Tssr1733 5 142733912 to 142733930 18 - TSS region transcription start site region 1733
Tssr1734 5 142734037 to 142734047 10 + TSS region transcription start site region 1734
Tssr1735 5 142734066 to 142734073 7 + TSS region transcription start site region 1735
4921504P13Rik 5 142734069 to 142735070 1001 unclassified gene RIKEN cDNA 4921504P13 gene
Tssr1736 5 142742190 to 142742195 5 - TSS region transcription start site region 1736
Tssr54288 5 142746719 to 142746721 2 - TSS region transcription start site region 54288
Cpgi16955 5 142761536 to 142761718 182 CpG island CpG island 16955
Cpgi16956 5 142764597 to 142764825 228 CpG island CpG island 16956
Tssr54289 5 142774184 to 142774199 15 - TSS region transcription start site region 54289
Cpgi16957 5 142787424 to 142788247 823 CpG island CpG island 16957
Tssr1737 5 142794686 to 142794697 11 - TSS region transcription start site region 1737
Tssr54290 5 142794720 to 142794782 62 - TSS region transcription start site region 54290
Tssr54291 5 142800422 to 142800442 20 - TSS region transcription start site region 54291
Tssr54292 5 142802984 to 142802987 3 - TSS region transcription start site region 54292
Gm31365 5 142811779 to 142815997 4218 + lncRNA gene predicted gene, 31365
Tssr49588 5 142812158 to 142812173 15 + TSS region transcription start site region 49588
Cpgi16958 5 142813812 to 142815793 1981 CpG island CpG island 16958
Tssr49589 5 142813997 to 142814003 6 + TSS region transcription start site region 49589
Tssr54293 5 142815342 to 142815361 19 - TSS region transcription start site region 54293
Tssr54294 5 142815406 to 142815477 71 - TSS region transcription start site region 54294
Tssr54295 5 142815812 to 142815861 49 - TSS region transcription start site region 54295
Cpgi16959 5 142816562 to 142818662 2100 CpG island CpG island 16959
Tssr54296 5 142816591 to 142816625 34 - TSS region transcription start site region 54296
Tssr49590 5 142816725 to 142816741 16 + TSS region transcription start site region 49590
Tssr54297 5 142817398 to 142817420 22 - TSS region transcription start site region 54297
Tssr54298 5 142817546 to 142817558 12 - TSS region transcription start site region 54298
Tssr54299 5 142817583 to 142817641 58 - TSS region transcription start site region 54299
Tssr54300 5 142817654 to 142817668 14 - TSS region transcription start site region 54300
Tssr49591 5 142817883 to 142817886 3 + TSS region transcription start site region 49591
Tssr49592 5 142818031 to 142818093 62 + TSS region transcription start site region 49592
Tssr54301 5 142818932 to 142818933 1 - TSS region transcription start site region 54301
Tssr49593 5 142818994 to 142819003 9 + TSS region transcription start site region 49593
Cpgi16960 5 142819545 to 142819924 379 CpG island CpG island 16960
Cpgi16961 5 142820224 to 142822027 1803 CpG island CpG island 16961
Tssr54302 5 142821285 to 142821290 5 - TSS region transcription start site region 54302
Tssr54303 5 142821441 to 142821456 15 - TSS region transcription start site region 54303
Tssr54304 5 142821681 to 142821705 24 - TSS region transcription start site region 54304
Tssr49594 5 142821784 to 142821818 34 + TSS region transcription start site region 49594
Tssr54305 5 142821806 to 142821823 17 - TSS region transcription start site region 54305
Tssr49595 5 142821863 to 142821895 32 + TSS region transcription start site region 49595
Tssr54306 5 142822348 to 142822388 40 - TSS region transcription start site region 54306
Tssr49596 5 142822584 to 142822598 14 + TSS region transcription start site region 49596
Tssr54307 5 142822810 to 142822821 11 - TSS region transcription start site region 54307
Tssr54308 5 142822837 to 142822855 18 - TSS region transcription start site region 54308
Tssr54309 5 142822964 to 142823000 36 - TSS region transcription start site region 54309
Gm15770 5 142852616 to 142853199 583 - pseudogene predicted gene 15770
Fbxl18 5 142871787 to 142895421 23634 - protein coding gene F-box and leucine-rich repeat protein 18
D430018E03Rik 5 142874077 to 142878373 4296 - sense intronic lncRNA gene RIKEN cDNA D430018E03 gene
Cpgi16962 5 142878707 to 142878926 219 CpG island CpG island 16962
Cpgi16963 5 142894771 to 142895590 819 CpG island CpG island 16963
Tssr54310 5 142895161 to 142895229 68 - TSS region transcription start site region 54310
Tssr54311 5 142895233 to 142895242 9 - TSS region transcription start site region 54311
Tssr49597 5 142895286 to 142895349 63 + TSS region transcription start site region 49597
Gm38733 5 142895395 to 142897924 2529 + lncRNA gene predicted gene, 38733
Tssr54312 5 142901397 to 142901399 2 - TSS region transcription start site region 54312
Actb 5 142903115 to 142906754 3639 - protein coding gene actin, beta
Tssr49598 5 142903116 to 142903140 24 + TSS region transcription start site region 49598
Tssr54313 5 142903140 to 142903169 29 - TSS region transcription start site region 54313
Tssr54314 5 142903253 to 142903287 34 - TSS region transcription start site region 54314
Tssr54315 5 142903289 to 142903309 20 - TSS region transcription start site region 54315
Tssr54316 5 142903321 to 142903333 12 - TSS region transcription start site region 54316
Tssr54317 5 142903391 to 142903419 28 - TSS region transcription start site region 54317
Tssr54318 5 142903484 to 142903507 23 - TSS region transcription start site region 54318
Tssr54319 5 142903526 to 142903575 49 - TSS region transcription start site region 54319
Tssr54320 5 142903601 to 142903613 12 - TSS region transcription start site region 54320
Tssr54321 5 142903647 to 142903651 4 - TSS region transcription start site region 54321
Tssr49599 5 142903684 to 142903723 39 + TSS region transcription start site region 49599
Tssr54322 5 142903705 to 142903730 25 - TSS region transcription start site region 54322
Tssr49600 5 142903764 to 142903787 23 + TSS region transcription start site region 49600
Tssr54323 5 142903794 to 142903800 6 - TSS region transcription start site region 54323
Tssr54324 5 142903801 to 142903850 49 - TSS region transcription start site region 54324
Tssr54325 5 142903909 to 142903932 23 - TSS region transcription start site region 54325
Tssr49601 5 142904130 to 142904174 44 + TSS region transcription start site region 49601
Tssr49602 5 142904175 to 142904187 12 + TSS region transcription start site region 49602
Tssr54326 5 142904176 to 142904207 31 - TSS region transcription start site region 54326
Tssr49603 5 142904353 to 142904383 30 + TSS region transcription start site region 49603
Tssr54327 5 142904383 to 142904415 32 - TSS region transcription start site region 54327
Tssr49604 5 142904450 to 142904470 20 + TSS region transcription start site region 49604
Tssr54328 5 142904474 to 142904510 36 - TSS region transcription start site region 54328
Tssr49605 5 142904513 to 142904547 34 + TSS region transcription start site region 49605
Tssr54329 5 142904563 to 142904601 38 - TSS region transcription start site region 54329
Tssr54330 5 142904637 to 142904648 11 - TSS region transcription start site region 54330
Tssr54331 5 142904698 to 142904712 14 - TSS region transcription start site region 54331
Tssr49606 5 142904700 to 142904750 50 + TSS region transcription start site region 49606
Tssr54332 5 142904744 to 142904783 39 - TSS region transcription start site region 54332
Tssr54333 5 142905128 to 142905153 25 - TSS region transcription start site region 54333
Tssr54334 5 142905169 to 142905181 12 - TSS region transcription start site region 54334
Tssr54335 5 142905312 to 142905340 28 - TSS region transcription start site region 54335
Tssr49607 5 142905347 to 142905359 12 + TSS region transcription start site region 49607
Tssr54336 5 142905379 to 142905401 22 - TSS region transcription start site region 54336
Tssr49608 5 142905404 to 142905440 36 + TSS region transcription start site region 49608
Tssr54337 5 142905406 to 142905418 12 - TSS region transcription start site region 54337
Cpgi16964 5 142905427 to 142907197 1770 CpG island CpG island 16964
Tssr54338 5 142905442 to 142905480 38 - TSS region transcription start site region 54338
Tssr54339 5 142905593 to 142905625 32 - TSS region transcription start site region 54339
Tssr54340 5 142905696 to 142905718 22 - TSS region transcription start site region 54340
Tssr54341 5 142905735 to 142905753 18 - TSS region transcription start site region 54341
Tssr54342 5 142905762 to 142905796 34 - TSS region transcription start site region 54342
Tssr54343 5 142905816 to 142905832 16 - TSS region transcription start site region 54343
Tssr54344 5 142905928 to 142905978 50 - TSS region transcription start site region 54344
Tssr1738 5 142905992 to 142905999 7 - TSS region transcription start site region 1738
Tssr1739 5 142906009 to 142906031 22 - TSS region transcription start site region 1739
Tssr54345 5 142906721 to 142906726 5 - TSS region transcription start site region 54345
Tssr1740 5 142907965 to 142907982 17 - TSS region transcription start site region 1740
Tssr49609 5 142909313 to 142909359 46 + TSS region transcription start site region 49609
Tssr1741 5 142909982 to 142909992 10 + TSS region transcription start site region 1741
Tssr49610 5 142920999 to 142921011 12 + TSS region transcription start site region 49610
Cpgi16965 5 142928939 to 142929664 725 CpG island CpG island 16965
Tssr54346 5 142929088 to 142929127 39 - TSS region transcription start site region 54346
Tssr49611 5 142929213 to 142929223 10 + TSS region transcription start site region 49611
Tssr49612 5 142929773 to 142929778 5 + TSS region transcription start site region 49612
Cpgi16966 5 142936419 to 142936589 170 CpG island CpG island 16966
Cpgi16967 5 142959989 to 142961524 1535 CpG island CpG island 16967
Tssr49613 5 142960348 to 142960363 15 + TSS region transcription start site region 49613
Fscn1 5 142960355 to 142973189 12834 + protein coding gene fascin actin-bundling protein 1
Tssr49614 5 142960477 to 142960493 16 + TSS region transcription start site region 49614
Tssr49615 5 142960958 to 142960990 32 + TSS region transcription start site region 49615
Tssr49616 5 142961000 to 142961020 20 + TSS region transcription start site region 49616
Tssr49617 5 142961188 to 142961200 12 + TSS region transcription start site region 49617
Cpgi16968 5 142961799 to 142962514 715 CpG island CpG island 16968
Tssr49618 5 142963678 to 142963689 11 + TSS region transcription start site region 49618