Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:14223859-18883886

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239 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema3e 5 14025276 to 14256689 231413 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
Gm43523 5 14242462 to 14245339 2877 + unclassified gene predicted gene 43523
Cpgi15552 5 14514609 to 14515718 1109 CpG island CpG island 15552
Pclo 5 14514918 to 14863459 348541 + protein coding gene piccolo (presynaptic cytomatrix protein)
Tssr45197 5 14514929 to 14514951 22 + TSS region transcription start site region 45197
Tssr45198 5 14514952 to 14514991 39 + TSS region transcription start site region 45198
Tssr45199 5 14514995 to 14514996 1 + TSS region transcription start site region 45199
Tssr45200 5 14515002 to 14515018 16 + TSS region transcription start site region 45200
Gm26918 5 14520673 to 14539852 19179 - antisense lncRNA gene predicted gene, 26918
Tssr45201 5 14520897 to 14520908 11 + TSS region transcription start site region 45201
Tssr45202 5 14521603 to 14521615 12 + TSS region transcription start site region 45202
Tssr45203 5 14521703 to 14521719 16 + TSS region transcription start site region 45203
Gm42446 5 14563338 to 14566621 3283 + unclassified gene predicted gene 42446
Gm42447 5 14596864 to 14599766 2902 + unclassified gene predicted gene 42447
Gm42448 5 14599919 to 14602562 2643 + unclassified gene predicted gene 42448
Gm42444 5 14604049 to 14608606 4557 + unclassified gene predicted gene 42444
Gm42445 5 14611652 to 14614544 2892 + unclassified gene predicted gene 42445
Gm43663 5 14665649 to 14667153 1504 + unclassified gene predicted gene 43663
Tssr45204 5 14669026 to 14669039 13 + TSS region transcription start site region 45204
Tssr45205 5 14669052 to 14669086 34 + TSS region transcription start site region 45205
Tssr45206 5 14677450 to 14677452 2 + TSS region transcription start site region 45206
Tssr45207 5 14684954 to 14684958 4 + TSS region transcription start site region 45207
Tssr50123 5 14692959 to 14692960 1 - TSS region transcription start site region 50123
Gm26954 5 14696985 to 14723664 26679 - antisense lncRNA gene predicted gene, 26954
Tssr50124 5 14723666 to 14723679 13 - TSS region transcription start site region 50124
Tssr50125 5 14723681 to 14723698 17 - TSS region transcription start site region 50125
Tssr50126 5 14723699 to 14723704 5 - TSS region transcription start site region 50126
Tssr50127 5 14723708 to 14723721 13 - TSS region transcription start site region 50127
Tssr50128 5 14723731 to 14723740 9 - TSS region transcription start site region 50128
Gm43662 5 14778932 to 14781202 2270 + unclassified gene predicted gene 43662
Gm18668 5 14783234 to 14784377 1143 + pseudogene predicted gene, 18668
Gm43665 5 14804901 to 14806559 1658 + unclassified gene predicted gene 43665
Gm9758 5 14910122 to 14914899 4777 - protein coding gene predicted gene 9758
D5Mit103a 5 14931998 to 14932222 224 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 103a
Speer4e 5 14933631 to 14938475 4844 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4e
Speer8-ps1 5 14945294 to 14978541 33247 + pseudogene spermatogenesis associated glutamate (E)-rich protein 8, pseudogene 1
Gm10354 5 14974113 to 14978935 4822 - protein coding gene predicted gene 10354
D5Mit103b 5 15027288 to 15027520 232 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 103b
Gm17019 5 15028950 to 15032998 4048 - protein coding gene predicted gene 17019
Gm43391 5 15464171 to 15478876 14705 + antisense lncRNA gene predicted gene 43391
Gm21149 5 15471703 to 15476523 4820 - protein coding gene predicted gene, 21149
9930105H17Rik 5 15498801 to 15501506 2705 unclassified non-coding RNA gene RIKEN cDNA 9930105H17 gene
Tssr1424 5 15507059 to 15507070 11 - TSS region transcription start site region 1424
Gm21847 5 15511563 to 15525867 14304 + antisense lncRNA gene predicted gene, 21847
Gm21190 5 15524456 to 15529222 4766 - protein coding gene predicted gene, 21190
Tssr1425 5 15577288 to 15577317 29 + TSS region transcription start site region 1425
Gm21083 5 15577333 to 15582078 4745 + protein coding gene predicted gene, 21083
Gm30613 5 15577483 to 15605125 27642 - antisense lncRNA gene predicted gene, 30613
Gm30417 5 15609971 to 15634110 24139 - lncRNA gene predicted gene, 30417
Tssr45208 5 15619087 to 15619110 23 + TSS region transcription start site region 45208
Speer4d 5 15619099 to 15623864 4765 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4D
4930572O03Rik 5 15652288 to 15657059 4771 - protein coding gene RIKEN cDNA 4930572O03 gene
Speer4cos 5 15680710 to 15714596 33886 + antisense lncRNA gene spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcript
Speer4c 5 15709501 to 15714271 4770 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4C
Gm42452 5 15798001 to 15799033 1032 + pseudogene predicted gene 42452
Gm42454 5 15805564 to 15806744 1180 + unclassified gene predicted gene 42454
4930519H02Rik 5 15863928 to 15883766 19838 - lincRNA gene RIKEN cDNA 4930519H02 gene
Gm42453 5 15870247 to 15870655 408 + pseudogene predicted gene 42453
Tssr50129 5 15883797 to 15883805 8 - TSS region transcription start site region 50129
Tssr50130 5 15883806 to 15883810 4 - TSS region transcription start site region 50130
Tssr50131 5 15883814 to 15883833 19 - TSS region transcription start site region 50131
Gm42451 5 15900244 to 15900487 243 - pseudogene predicted gene 42451
Gm3510 5 15923755 to 15933406 9651 - lincRNA gene predicted gene 3510
Cpgi15553 5 15933981 to 15935641 1660 CpG island CpG island 15553
Tssr45209 5 15934373 to 15934397 24 + TSS region transcription start site region 45209
Tssr45210 5 15934556 to 15934624 68 + TSS region transcription start site region 45210
Tssr1426 5 15934674 to 15934679 5 + TSS region transcription start site region 1426
Tssr45211 5 15934685 to 15934696 11 + TSS region transcription start site region 45211
Cacna2d1 5 15934691 to 16374511 439820 + protein coding gene calcium channel, voltage-dependent, alpha2/delta subunit 1
Tssr45212 5 15934706 to 15934719 13 + TSS region transcription start site region 45212
Tssr45213 5 15934731 to 15934746 15 + TSS region transcription start site region 45213
Tssr45214 5 15934762 to 15934787 25 + TSS region transcription start site region 45214
Tssr1427 5 15934891 to 15934900 9 + TSS region transcription start site region 1427
Tssr45215 5 15934913 to 15934926 13 + TSS region transcription start site region 45215
Tssr45216 5 15934953 to 15934962 9 + TSS region transcription start site region 45216
6720420G18Rik 5 15969941 to 15971044 1103 unclassified gene RIKEN cDNA 6720420G18 gene
Tssr45217 5 15991096 to 15991097 1 + TSS region transcription start site region 45217
9630055L06Rik 5 15993956 to 15999061 5105 lncRNA gene RIKEN cDNA 9630055L06 gene
Gm43000 5 15993957 to 15997839 3882 - antisense lncRNA gene predicted gene 43000
Tssr45218 5 16008810 to 16008811 1 + TSS region transcription start site region 45218
D5Mit226 5 16010646 to 16010769 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 226
Gm43490 5 16107129 to 16109780 2651 + unclassified gene predicted gene 43490
Tssr1428 5 16181274 to 16181281 7 + TSS region transcription start site region 1428
Tssr45219 5 16293333 to 16293337 4 + TSS region transcription start site region 45219
Tssr45220 5 16296820 to 16296824 4 + TSS region transcription start site region 45220
Gm43491 5 16343398 to 16344181 783 - pseudogene predicted gene 43491
D5Mit194 5 16483327 to 16483443 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 194
Gm8984 5 16508165 to 16509183 1018 - pseudogene predicted gene 8984
Tssr45221 5 16553455 to 16553485 30 + TSS region transcription start site region 45221
Tssr45222 5 16553488 to 16553502 14 + TSS region transcription start site region 45222
Hgf 5 16553495 to 16619439 65944 + protein coding gene hepatocyte growth factor
Tssr1429 5 16553505 to 16553517 12 + TSS region transcription start site region 1429
Tssr45223 5 16553540 to 16553588 48 + TSS region transcription start site region 45223
Tssr45224 5 16553595 to 16553615 20 + TSS region transcription start site region 45224
Tssr45225 5 16553749 to 16553761 12 + TSS region transcription start site region 45225
Tssr45226 5 16553779 to 16553795 16 + TSS region transcription start site region 45226
Tssr45227 5 16553799 to 16553821 22 + TSS region transcription start site region 45227
Tssr45228 5 16553831 to 16553857 26 + TSS region transcription start site region 45228
Tssr45229 5 16553859 to 16553886 27 + TSS region transcription start site region 45229
Tssr45230 5 16553900 to 16553909 9 + TSS region transcription start site region 45230
Gm31113 5 16554026 to 16569479 15453 - lncRNA gene predicted gene, 31113
Gm43489 5 16572951 to 16573943 992 + unclassified gene predicted gene 43489
Gm42975 5 16605722 to 16607212 1490 + unclassified gene predicted gene 42975
D5Mit293 5 16639444 to 16639565 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 293
Gm8991 5 16729996 to 16731070 1074 - pseudogene predicted pseudogene 8991
Gm28710 5 16791828 to 16829017 37189 + lincRNA gene predicted gene 28710
Tssr45231 5 16870134 to 16870143 9 + TSS region transcription start site region 45231
Tssr45232 5 16870167 to 16870178 11 + TSS region transcription start site region 45232
Tssr45233 5 16870214 to 16870215 1 + TSS region transcription start site region 45233
Tssr45234 5 16870224 to 16870238 14 + TSS region transcription start site region 45234
Tssr45235 5 16870243 to 16870254 11 + TSS region transcription start site region 45235
Tssr45236 5 16870255 to 16870263 8 + TSS region transcription start site region 45236
Gm42855 5 16981036 to 16981288 252 + pseudogene predicted gene 42855
D5Mit225 5 17005788 to 17005911 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 225
Tssr45237 5 17142230 to 17142269 39 + TSS region transcription start site region 45237
Gm6673 5 17223382 to 17226908 3526 - pseudogene predicted gene 6673
Tssr1430 5 17302743 to 17302745 2 + TSS region transcription start site region 1430
Speer4f2 5 17373165 to 17377955 4790 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4f2
Gm21999 5 17380573 to 17381699 1126 + pseudogene predicted gene 21999
Tssr50132 5 17397867 to 17397877 10 - TSS region transcription start site region 50132
Tssr50133 5 17397902 to 17397909 7 - TSS region transcription start site region 50133
Speer4f1 5 17476122 to 17480936 4814 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 4F1
Gm7047 5 17493223 to 17494080 857 + pseudogene predicted gene 7047
Gm31555 5 17570785 to 17571684 899 - lncRNA gene predicted gene, 31555
Tssr50134 5 17571664 to 17571685 21 - TSS region transcription start site region 50134
Tssr45238 5 17574220 to 17574240 20 + TSS region transcription start site region 45238
Cpgi15554 5 17574255 to 17575127 872 CpG island CpG island 15554
Tssr45239 5 17574268 to 17574293 25 + TSS region transcription start site region 45239
Tssr45240 5 17574423 to 17574439 16 + TSS region transcription start site region 45240
Tssr45241 5 17574454 to 17574465 11 + TSS region transcription start site region 45241
Tssr45242 5 17574470 to 17574486 16 + TSS region transcription start site region 45242
Tssr45243 5 17574517 to 17574528 11 + TSS region transcription start site region 45243
Tssr45244 5 17574540 to 17574549 9 + TSS region transcription start site region 45244
Tssr45245 5 17574571 to 17574578 7 + TSS region transcription start site region 45245
Tssr45246 5 17574585 to 17574605 20 + TSS region transcription start site region 45246
Tssr45247 5 17574608 to 17574631 23 + TSS region transcription start site region 45247
Tssr45248 5 17574638 to 17574666 28 + TSS region transcription start site region 45248
Tssr45249 5 17574667 to 17574686 19 + TSS region transcription start site region 45249
Tssr45250 5 17574695 to 17574714 19 + TSS region transcription start site region 45250
Tssr45251 5 17574726 to 17574780 54 + TSS region transcription start site region 45251
Sema3c 5 17574816 to 17730268 155452 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
Tssr45252 5 17577038 to 17577046 8 + TSS region transcription start site region 45252
Tssr45253 5 17577820 to 17577831 11 + TSS region transcription start site region 45253
Pgia41 5 17618146 to 17618282 136 QTL proteoglycan induced arthritis 41
D5Mit1 5 17618146 to 17618282 136 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1
Tssr45254 5 17694655 to 17694657 2 + TSS region transcription start site region 45254
Tssr50135 5 17776775 to 17776798 23 - TSS region transcription start site region 50135
Tssr50136 5 17780577 to 17780608 31 - TSS region transcription start site region 50136
Tssr50137 5 17780679 to 17780696 17 - TSS region transcription start site region 50137
Cd36 5 17781690 to 17888801 107111 - protein coding gene CD36 molecule
Tssr50138 5 17782652 to 17782663 11 - TSS region transcription start site region 50138
Tssr50139 5 17782763 to 17782774 11 - TSS region transcription start site region 50139
Tssr50140 5 17782930 to 17782945 15 - TSS region transcription start site region 50140
Tssr50141 5 17785749 to 17785839 90 - TSS region transcription start site region 50141
Tssr50142 5 17785844 to 17785899 55 - TSS region transcription start site region 50142
Tssr50143 5 17787709 to 17787748 39 - TSS region transcription start site region 50143
Tssr50144 5 17788277 to 17788289 12 - TSS region transcription start site region 50144
Tssr50145 5 17788295 to 17788331 36 - TSS region transcription start site region 50145
Tssr50146 5 17795430 to 17795475 45 - TSS region transcription start site region 50146
Tssr50147 5 17795575 to 17795582 7 - TSS region transcription start site region 50147
Tssr50148 5 17795601 to 17795608 7 - TSS region transcription start site region 50148
Tssr50149 5 17795618 to 17795656 38 - TSS region transcription start site region 50149
Tssr50150 5 17795671 to 17795682 11 - TSS region transcription start site region 50150
Tssr50151 5 17795683 to 17795701 18 - TSS region transcription start site region 50151
Tssr50152 5 17796987 to 17797000 13 - TSS region transcription start site region 50152
Tssr50153 5 17797014 to 17797068 54 - TSS region transcription start site region 50153
Tssr50154 5 17797071 to 17797195 124 - TSS region transcription start site region 50154
Tssr50155 5 17806055 to 17806075 20 - TSS region transcription start site region 50155
Tssr50156 5 17806170 to 17806206 36 - TSS region transcription start site region 50156
Tssr50157 5 17806251 to 17806273 22 - TSS region transcription start site region 50157
Tssr50158 5 17806380 to 17806423 43 - TSS region transcription start site region 50158
Tssr50159 5 17807886 to 17807891 5 - TSS region transcription start site region 50159
Tssr50160 5 17808380 to 17808381 1 - TSS region transcription start site region 50160
Tssr50161 5 17811205 to 17811237 32 - TSS region transcription start site region 50161
Tssr50162 5 17813044 to 17813089 45 - TSS region transcription start site region 50162
Tssr50163 5 17813094 to 17813118 24 - TSS region transcription start site region 50163
Tssr50164 5 17814144 to 17814188 44 - TSS region transcription start site region 50164
Tssr50165 5 17814191 to 17814200 9 - TSS region transcription start site region 50165
Tssr50166 5 17814215 to 17814219 4 - TSS region transcription start site region 50166
Tssr50167 5 17814221 to 17814232 11 - TSS region transcription start site region 50167
Tssr50168 5 17814253 to 17814268 15 - TSS region transcription start site region 50168
Tssr50169 5 17814284 to 17814300 16 - TSS region transcription start site region 50169
Tssr50170 5 17814699 to 17814831 132 - TSS region transcription start site region 50170
Tssr45255 5 17814758 to 17814796 38 + TSS region transcription start site region 45255
Tssr50171 5 17820482 to 17820535 53 - TSS region transcription start site region 50171
Tssr50172 5 17820539 to 17820570 31 - TSS region transcription start site region 50172
Tssr50173 5 17820589 to 17820604 15 - TSS region transcription start site region 50173
Tssr50174 5 17821430 to 17821441 11 - TSS region transcription start site region 50174
Tssr50175 5 17821470 to 17821483 13 - TSS region transcription start site region 50175
Tssr50176 5 17828635 to 17828649 14 - TSS region transcription start site region 50176
Tssr50177 5 17828812 to 17828831 19 - TSS region transcription start site region 50177
Tssr50178 5 17828864 to 17828869 5 - TSS region transcription start site region 50178
Tssr50179 5 17828883 to 17828890 7 - TSS region transcription start site region 50179
Tssr50180 5 17828897 to 17828944 47 - TSS region transcription start site region 50180
Tssr45256 5 17828932 to 17828939 7 + TSS region transcription start site region 45256
Tssr50181 5 17828946 to 17828972 26 - TSS region transcription start site region 50181
Tssr50182 5 17828982 to 17828996 14 - TSS region transcription start site region 50182
Tssr50183 5 17829184 to 17829199 15 - TSS region transcription start site region 50183
Tssr50184 5 17829205 to 17829220 15 - TSS region transcription start site region 50184
Tssr50185 5 17829291 to 17829297 6 - TSS region transcription start site region 50185