Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:142213989-142744161

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sdk1 5 141241497 to 142215586 974089 + protein coding gene sidekick cell adhesion molecule 1
Gm26970 5 142283106 to 142284069 963 + pseudogene predicted gene, 26970
D5Mit384 5 142310943 to 142311073 130 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-384
Tssr49572 5 142341334 to 142341346 12 + TSS region transcription start site region 49572
Gm30998 5 142350151 to 142363303 13152 - lncRNA gene predicted gene, 30998
Tssr49573 5 142358039 to 142358043 4 + TSS region transcription start site region 49573
Gm31068 5 142365022 to 142367200 2178 + lncRNA gene predicted gene, 31068
Tssr49574 5 142365728 to 142365738 10 + TSS region transcription start site region 49574
Cpgi16943 5 142367075 to 142368040 965 CpG island CpG island 16943
Tssr49575 5 142367778 to 142367813 35 + TSS region transcription start site region 49575
Gm31127 5 142380088 to 142388209 8121 - lncRNA gene predicted gene, 31127
Cpgi16944 5 142401007 to 142402565 1558 CpG island CpG island 16944
Tssr49576 5 142401484 to 142401532 48 + TSS region transcription start site region 49576
Foxk1 5 142401497 to 142462011 60514 + protein coding gene forkhead box K1
Tssr54278 5 142424815 to 142424829 14 - TSS region transcription start site region 54278
Tssr49577 5 142441106 to 142441110 4 + TSS region transcription start site region 49577
Cpgi16945 5 142441868 to 142442168 300 CpG island CpG island 16945
Tssr49578 5 142453958 to 142453991 33 + TSS region transcription start site region 49578
Gm10868 5 142456517 to 142457582 1065 unclassified gene predicted gene 10868
Cpgi16946 5 142463679 to 142464421 742 CpG island CpG island 16946
Ap5z1 5 142463944 to 142478710 14766 + protein coding gene adaptor-related protein complex 5, zeta 1 subunit
Tssr49579 5 142464018 to 142464072 54 + TSS region transcription start site region 49579
Cpgi16947 5 142478989 to 142479161 172 CpG island CpG island 16947
Radil 5 142484839 to 142551098 66259 - protein coding gene Ras association and DIL domains
Gm38732 5 142500743 to 142514411 13668 + lncRNA gene predicted gene, 38732
Tssr54279 5 142501797 to 142501822 25 - TSS region transcription start site region 54279
D5Mit222 5 142503346 to 142503453 107 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 222
Tssr54280 5 142509653 to 142509664 11 - TSS region transcription start site region 54280
Papolb 5 142527740 to 142530076 2336 - protein coding gene poly (A) polymerase beta (testis specific)
Cpgi16948 5 142529710 to 142530550 840 CpG island CpG island 16948
Tssr54281 5 142530041 to 142530084 43 - TSS region transcription start site region 54281
Tssr54282 5 142530094 to 142530100 6 - TSS region transcription start site region 54282
Cpgi16949 5 142550370 to 142551448 1078 CpG island CpG island 16949
Tssr54283 5 142551027 to 142551110 83 - TSS region transcription start site region 54283
Gm43037 5 142556444 to 142556954 510 + pseudogene predicted gene 43037
Cpgi16950 5 142557390 to 142557572 182 CpG island CpG island 16950
Mmd2 5 142563480 to 142608810 45330 - protein coding gene monocyte to macrophage differentiation-associated 2
Tssr54284 5 142564494 to 142564499 5 - TSS region transcription start site region 54284
D5Dcr34 5 142595541 to 142595640 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 34
Cpgi16951 5 142608275 to 142609032 757 CpG island CpG island 16951
Tssr54285 5 142608748 to 142608780 32 - TSS region transcription start site region 54285
Tssr54286 5 142608785 to 142608808 23 - TSS region transcription start site region 54286
Gm31274 5 142622603 to 142622831 228 - pseudogene predicted gene, 31274
B630006N21Rik 5 142627697 to 142630489 2792 unclassified gene RIKEN cDNA B630006N21 gene
Cpgi16952 5 142629084 to 142630166 1082 CpG island CpG island 16952
Tssr54287 5 142629328 to 142629348 20 - TSS region transcription start site region 54287
Wipi2 5 142629535 to 142669672 40137 + protein coding gene WD repeat domain, phosphoinositide interacting 2
Tssr49580 5 142629537 to 142629589 52 + TSS region transcription start site region 49580
Tssr49581 5 142629598 to 142629615 17 + TSS region transcription start site region 49581
Tssr49582 5 142629726 to 142629763 37 + TSS region transcription start site region 49582
Tssr49583 5 142656016 to 142656021 5 + TSS region transcription start site region 49583
Gm40352 5 142671869 to 142693356 21487 - lncRNA gene predicted gene, 40352
Cpgi16953 5 142692337 to 142692537 200 CpG island CpG island 16953
Tssr49584 5 142692457 to 142692481 24 + TSS region transcription start site region 49584
Tssr49585 5 142692482 to 142692502 20 + TSS region transcription start site region 49585
Slc29a4 5 142692512 to 142722490 29978 + protein coding gene solute carrier family 29 (nucleoside transporters), member 4
Tssr49586 5 142694098 to 142694102 4 + TSS region transcription start site region 49586
Cpgi16954 5 142701581 to 142702718 1137 CpG island CpG island 16954
Tssr49587 5 142702091 to 142702153 62 + TSS region transcription start site region 49587
Tnrc18 5 142724661 to 142817662 93001 - protein coding gene trinucleotide repeat containing 18
Tssr1733 5 142733912 to 142733930 18 - TSS region transcription start site region 1733
Tssr1734 5 142734037 to 142734047 10 + TSS region transcription start site region 1734
Tssr1735 5 142734066 to 142734073 7 + TSS region transcription start site region 1735
4921504P13Rik 5 142734069 to 142735070 1001 unclassified gene RIKEN cDNA 4921504P13 gene
Tssr1736 5 142742190 to 142742195 5 - TSS region transcription start site region 1736