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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:142211444-142901954

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sdk1 5 141241497 to 142215586 974089 + protein coding gene sidekick cell adhesion molecule 1
Gm26970 5 142283106 to 142284069 963 + pseudogene predicted gene, 26970
D5Mit384 5 142310943 to 142311073 130 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-384
Tssr49572 5 142341334 to 142341346 12 + TSS region transcription start site region 49572
Gm30998 5 142350151 to 142363303 13152 - lncRNA gene predicted gene, 30998
Tssr49573 5 142358039 to 142358043 4 + TSS region transcription start site region 49573
Gm31068 5 142365022 to 142367200 2178 + lncRNA gene predicted gene, 31068
Tssr49574 5 142365728 to 142365738 10 + TSS region transcription start site region 49574
Cpgi16943 5 142367075 to 142368040 965 CpG island CpG island 16943
Tssr49575 5 142367778 to 142367813 35 + TSS region transcription start site region 49575
Gm31127 5 142380088 to 142388209 8121 - lncRNA gene predicted gene, 31127
Cpgi16944 5 142401007 to 142402565 1558 CpG island CpG island 16944
Tssr49576 5 142401484 to 142401532 48 + TSS region transcription start site region 49576
Foxk1 5 142401497 to 142462011 60514 + protein coding gene forkhead box K1
Tssr54278 5 142424815 to 142424829 14 - TSS region transcription start site region 54278
Tssr49577 5 142441106 to 142441110 4 + TSS region transcription start site region 49577
Cpgi16945 5 142441868 to 142442168 300 CpG island CpG island 16945
Tssr49578 5 142453958 to 142453991 33 + TSS region transcription start site region 49578
Gm10868 5 142456517 to 142457582 1065 unclassified gene predicted gene 10868
Cpgi16946 5 142463679 to 142464421 742 CpG island CpG island 16946
Ap5z1 5 142463944 to 142478710 14766 + protein coding gene adaptor-related protein complex 5, zeta 1 subunit
Tssr49579 5 142464018 to 142464072 54 + TSS region transcription start site region 49579
Cpgi16947 5 142478989 to 142479161 172 CpG island CpG island 16947
Radil 5 142484839 to 142551098 66259 - protein coding gene Ras association and DIL domains
Gm38732 5 142500743 to 142514411 13668 + lncRNA gene predicted gene, 38732
Tssr54279 5 142501797 to 142501822 25 - TSS region transcription start site region 54279
D5Mit222 5 142503346 to 142503453 107 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 222
Tssr54280 5 142509653 to 142509664 11 - TSS region transcription start site region 54280
Papolb 5 142527740 to 142530076 2336 - protein coding gene poly (A) polymerase beta (testis specific)
Cpgi16948 5 142529710 to 142530550 840 CpG island CpG island 16948
Tssr54281 5 142530041 to 142530084 43 - TSS region transcription start site region 54281
Tssr54282 5 142530094 to 142530100 6 - TSS region transcription start site region 54282
Cpgi16949 5 142550370 to 142551448 1078 CpG island CpG island 16949
Tssr54283 5 142551027 to 142551110 83 - TSS region transcription start site region 54283
Gm43037 5 142556444 to 142556954 510 + pseudogene predicted gene 43037
Cpgi16950 5 142557390 to 142557572 182 CpG island CpG island 16950
Mmd2 5 142563480 to 142608810 45330 - protein coding gene monocyte to macrophage differentiation-associated 2
Tssr54284 5 142564494 to 142564499 5 - TSS region transcription start site region 54284
D5Dcr34 5 142595541 to 142595640 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 34
Cpgi16951 5 142608275 to 142609032 757 CpG island CpG island 16951
Tssr54285 5 142608748 to 142608780 32 - TSS region transcription start site region 54285
Tssr54286 5 142608785 to 142608808 23 - TSS region transcription start site region 54286
Gm31274 5 142622603 to 142622831 228 - pseudogene predicted gene, 31274
B630006N21Rik 5 142627697 to 142630489 2792 unclassified gene RIKEN cDNA B630006N21 gene
Cpgi16952 5 142629084 to 142630166 1082 CpG island CpG island 16952
Tssr54287 5 142629328 to 142629348 20 - TSS region transcription start site region 54287
Wipi2 5 142629535 to 142669672 40137 + protein coding gene WD repeat domain, phosphoinositide interacting 2
Tssr49580 5 142629537 to 142629589 52 + TSS region transcription start site region 49580
Tssr49581 5 142629598 to 142629615 17 + TSS region transcription start site region 49581
Tssr49582 5 142629726 to 142629763 37 + TSS region transcription start site region 49582
Tssr49583 5 142656016 to 142656021 5 + TSS region transcription start site region 49583
Gm40352 5 142671869 to 142693356 21487 - lncRNA gene predicted gene, 40352
Cpgi16953 5 142692337 to 142692537 200 CpG island CpG island 16953
Tssr49584 5 142692457 to 142692481 24 + TSS region transcription start site region 49584
Tssr49585 5 142692482 to 142692502 20 + TSS region transcription start site region 49585
Slc29a4 5 142692512 to 142722490 29978 + protein coding gene solute carrier family 29 (nucleoside transporters), member 4
Tssr49586 5 142694098 to 142694102 4 + TSS region transcription start site region 49586
Cpgi16954 5 142701581 to 142702718 1137 CpG island CpG island 16954
Tssr49587 5 142702091 to 142702153 62 + TSS region transcription start site region 49587
Tnrc18 5 142724661 to 142817662 93001 - protein coding gene trinucleotide repeat containing 18
Tssr1733 5 142733912 to 142733930 18 - TSS region transcription start site region 1733
Tssr1734 5 142734037 to 142734047 10 + TSS region transcription start site region 1734
Tssr1735 5 142734066 to 142734073 7 + TSS region transcription start site region 1735
4921504P13Rik 5 142734069 to 142735070 1001 unclassified gene RIKEN cDNA 4921504P13 gene
Tssr1736 5 142742190 to 142742195 5 - TSS region transcription start site region 1736
Tssr54288 5 142746719 to 142746721 2 - TSS region transcription start site region 54288
Cpgi16955 5 142761536 to 142761718 182 CpG island CpG island 16955
Cpgi16956 5 142764597 to 142764825 228 CpG island CpG island 16956
Tssr54289 5 142774184 to 142774199 15 - TSS region transcription start site region 54289
Cpgi16957 5 142787424 to 142788247 823 CpG island CpG island 16957
Tssr1737 5 142794686 to 142794697 11 - TSS region transcription start site region 1737
Tssr54290 5 142794720 to 142794782 62 - TSS region transcription start site region 54290
Tssr54291 5 142800422 to 142800442 20 - TSS region transcription start site region 54291
Tssr54292 5 142802984 to 142802987 3 - TSS region transcription start site region 54292
Gm31365 5 142811779 to 142815997 4218 + lncRNA gene predicted gene, 31365
Tssr49588 5 142812158 to 142812173 15 + TSS region transcription start site region 49588
Cpgi16958 5 142813812 to 142815793 1981 CpG island CpG island 16958
Tssr49589 5 142813997 to 142814003 6 + TSS region transcription start site region 49589
Tssr54293 5 142815342 to 142815361 19 - TSS region transcription start site region 54293
Tssr54294 5 142815406 to 142815477 71 - TSS region transcription start site region 54294
Tssr54295 5 142815812 to 142815861 49 - TSS region transcription start site region 54295
Cpgi16959 5 142816562 to 142818662 2100 CpG island CpG island 16959
Tssr54296 5 142816591 to 142816625 34 - TSS region transcription start site region 54296
Tssr49590 5 142816725 to 142816741 16 + TSS region transcription start site region 49590
Tssr54297 5 142817398 to 142817420 22 - TSS region transcription start site region 54297
Tssr54298 5 142817546 to 142817558 12 - TSS region transcription start site region 54298
Tssr54299 5 142817583 to 142817641 58 - TSS region transcription start site region 54299
Tssr54300 5 142817654 to 142817668 14 - TSS region transcription start site region 54300
Tssr49591 5 142817883 to 142817886 3 + TSS region transcription start site region 49591
Tssr49592 5 142818031 to 142818093 62 + TSS region transcription start site region 49592
Tssr54301 5 142818932 to 142818933 1 - TSS region transcription start site region 54301
Tssr49593 5 142818994 to 142819003 9 + TSS region transcription start site region 49593
Cpgi16960 5 142819545 to 142819924 379 CpG island CpG island 16960
Cpgi16961 5 142820224 to 142822027 1803 CpG island CpG island 16961
Tssr54302 5 142821285 to 142821290 5 - TSS region transcription start site region 54302
Tssr54303 5 142821441 to 142821456 15 - TSS region transcription start site region 54303
Tssr54304 5 142821681 to 142821705 24 - TSS region transcription start site region 54304
Tssr49594 5 142821784 to 142821818 34 + TSS region transcription start site region 49594
Tssr54305 5 142821806 to 142821823 17 - TSS region transcription start site region 54305
Tssr49595 5 142821863 to 142821895 32 + TSS region transcription start site region 49595
Tssr54306 5 142822348 to 142822388 40 - TSS region transcription start site region 54306
Tssr49596 5 142822584 to 142822598 14 + TSS region transcription start site region 49596
Tssr54307 5 142822810 to 142822821 11 - TSS region transcription start site region 54307
Tssr54308 5 142822837 to 142822855 18 - TSS region transcription start site region 54308
Tssr54309 5 142822964 to 142823000 36 - TSS region transcription start site region 54309
Gm15770 5 142852616 to 142853199 583 - pseudogene predicted gene 15770
Fbxl18 5 142871787 to 142895421 23634 - protein coding gene F-box and leucine-rich repeat protein 18
D430018E03Rik 5 142874077 to 142878373 4296 - sense intronic lncRNA gene RIKEN cDNA D430018E03 gene
Cpgi16962 5 142878707 to 142878926 219 CpG island CpG island 16962
Cpgi16963 5 142894771 to 142895590 819 CpG island CpG island 16963
Tssr54310 5 142895161 to 142895229 68 - TSS region transcription start site region 54310
Tssr54311 5 142895233 to 142895242 9 - TSS region transcription start site region 54311
Tssr49597 5 142895286 to 142895349 63 + TSS region transcription start site region 49597
Gm38733 5 142895395 to 142897924 2529 + lncRNA gene predicted gene, 38733
Tssr54312 5 142901397 to 142901399 2 - TSS region transcription start site region 54312