Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:140988812-144640793

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526 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa24 5 119806972 to 141714711 21907739 QTL B.burgdorferi-associated arthritis 24
Elmaz2 5 125101165 to 141714711 16613546 QTL elevated maze behavior 2
Xiaf2 5 126090176 to 144640558 18550382 heritable phenotypic marker X inactivation autosomal factor 2
Card11 5 140872990 to 141000582 127592 - protein coding gene caspase recruitment domain family, member 11
Tssr54267 5 140992362 to 140992399 37 - TSS region transcription start site region 54267
D5Dcr29 5 140994339 to 140994443 104 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 29
Tssr54268 5 140995574 to 140995582 8 - TSS region transcription start site region 54268
Tssr54269 5 140995768 to 140995786 18 - TSS region transcription start site region 54269
Tssr54270 5 140995827 to 140995841 14 - TSS region transcription start site region 54270
Tssr54271 5 141000558 to 141000589 31 - TSS region transcription start site region 54271
Tssr54272 5 141000590 to 141000632 42 - TSS region transcription start site region 54272
Tssr54273 5 141000634 to 141000649 15 - TSS region transcription start site region 54273
Tssr54274 5 141000656 to 141000679 23 - TSS region transcription start site region 54274
Gm38729 5 141005001 to 141013486 8485 - lncRNA gene predicted gene, 38729
D5Dcr5 5 141022472 to 141022572 100 DNA segment DNA segment, Chr 5, Derry C. Roopenian 5
Gm44385 5 141029928 to 141030008 80 + miRNA gene predicted gene, 44385
Cpgi16938 5 141044300 to 141044484 184 CpG island CpG island 16938
Gm38730 5 141064235 to 141074685 10450 + lncRNA gene predicted gene, 38730
Gm26113 5 141080431 to 141080509 78 + miRNA gene predicted gene, 26113
Tssr49564 5 141116324 to 141116329 5 + TSS region transcription start site region 49564
Gm30866 5 141124859 to 141158981 34122 + lncRNA gene predicted gene, 30866
D5Mit380 5 141164308 to 141164427 119 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 380
D5Dcr30 5 141194598 to 141194693 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 30
D5Mit328 5 141211202 to 141211299 97 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 328
Tssr54275 5 141230296 to 141230300 4 - TSS region transcription start site region 54275
D5Dcr6 5 141238500 to 141238596 96 DNA segment DNA segment, Chr 5, Derry C. Roopenian 6
Cpgi16939 5 141240487 to 141242356 1869 CpG island CpG island 16939
Sdk1 5 141241497 to 142215586 974089 + protein coding gene sidekick cell adhesion molecule 1
Tssr49565 5 141241524 to 141241542 18 + TSS region transcription start site region 49565
Tssr49566 5 141241554 to 141241569 15 + TSS region transcription start site region 49566
Tssr49567 5 141241593 to 141241605 12 + TSS region transcription start site region 49567
Tssr49568 5 141241629 to 141241643 14 + TSS region transcription start site region 49568
Cpgi16940 5 141243428 to 141243725 297 CpG island CpG island 16940
D5Dcr31 5 141264885 to 141264983 98 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 31
Gm6433 5 141267581 to 141268455 874 - pseudogene predicted gene 6433
Tssr54276 5 141268480 to 141268481 1 - TSS region transcription start site region 54276
Gm43708 5 141297143 to 141298103 960 - unclassified gene predicted gene 43708
Gm43556 5 141307387 to 141308067 680 - unclassified gene predicted gene 43556
Gm43557 5 141315765 to 141318134 2369 - unclassified gene predicted gene 43557
Gm16035 5 141373179 to 141380926 7747 - antisense lncRNA gene predicted gene 16035
Tssr54277 5 141380928 to 141380947 19 - TSS region transcription start site region 54277
D5Dcr7 5 141457834 to 141457932 98 DNA segment DNA segment, Chr 5, Derry C. Roopenian 7
D5Dcr32 5 141553231 to 141553327 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 32
Gm24131 5 141566143 to 141566249 106 - snRNA gene predicted gene, 24131
D5Mit142 5 141572510 to 141572641 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 142
3200001G23Rik 5 141593881 to 141595077 1196 unclassified gene RIKEN cDNA 3200001G23 gene
Gm16036 5 141595985 to 141616002 20017 - antisense lncRNA gene predicted gene 16036
D5Dcr33 5 141619567 to 141619663 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 33
Lbw3 5 141714580 to 141714711 131 QTL lupus NZB x NZW 3
D5Mit101 5 141714580 to 141714711 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 101
D5Mit375 5 141793572 to 141793682 110 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 375
Tssr49569 5 141848020 to 141848023 3 + TSS region transcription start site region 49569
Tssr49570 5 141856692 to 141856711 19 + TSS region transcription start site region 49570
Tssr49571 5 141867550 to 141867551 1 + TSS region transcription start site region 49571
D5Ertd525e 5 142060001 to 142060250 249 DNA segment DNA segment, Chr 5, ERATO Doi 525, expressed
Cpgi16941 5 142096643 to 142096910 267 CpG island CpG island 16941
D330005C11Rik 5 142109430 to 142112592 3162 unclassified gene RIKEN cDNA D330005C11 gene
D5Mit51 5 142147702 to 142147843 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 51
Pbwg13 5 142147702 to 142147843 141 QTL postnatal body weight growth 13
Cpgi16942 5 142172468 to 142172641 173 CpG island CpG island 16942
Gm26970 5 142283106 to 142284069 963 + pseudogene predicted gene, 26970
D5Mit384 5 142310943 to 142311073 130 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-384
Tssr49572 5 142341334 to 142341346 12 + TSS region transcription start site region 49572
Gm30998 5 142350151 to 142363303 13152 - lncRNA gene predicted gene, 30998
Tssr49573 5 142358039 to 142358043 4 + TSS region transcription start site region 49573
Gm31068 5 142365022 to 142367200 2178 + lncRNA gene predicted gene, 31068
Tssr49574 5 142365728 to 142365738 10 + TSS region transcription start site region 49574
Cpgi16943 5 142367075 to 142368040 965 CpG island CpG island 16943
Tssr49575 5 142367778 to 142367813 35 + TSS region transcription start site region 49575
Gm31127 5 142380088 to 142388209 8121 - lncRNA gene predicted gene, 31127
Cpgi16944 5 142401007 to 142402565 1558 CpG island CpG island 16944
Tssr49576 5 142401484 to 142401532 48 + TSS region transcription start site region 49576
Foxk1 5 142401497 to 142462011 60514 + protein coding gene forkhead box K1
Tssr54278 5 142424815 to 142424829 14 - TSS region transcription start site region 54278
Tssr49577 5 142441106 to 142441110 4 + TSS region transcription start site region 49577
Cpgi16945 5 142441868 to 142442168 300 CpG island CpG island 16945
Tssr49578 5 142453958 to 142453991 33 + TSS region transcription start site region 49578
Gm10868 5 142456517 to 142457582 1065 unclassified gene predicted gene 10868
Cpgi16946 5 142463679 to 142464421 742 CpG island CpG island 16946
Ap5z1 5 142463944 to 142478710 14766 + protein coding gene adaptor-related protein complex 5, zeta 1 subunit
Tssr49579 5 142464018 to 142464072 54 + TSS region transcription start site region 49579
Cpgi16947 5 142478989 to 142479161 172 CpG island CpG island 16947
Radil 5 142484839 to 142551098 66259 - protein coding gene Ras association and DIL domains
Gm38732 5 142500743 to 142514411 13668 + lncRNA gene predicted gene, 38732
Tssr54279 5 142501797 to 142501822 25 - TSS region transcription start site region 54279
D5Mit222 5 142503346 to 142503453 107 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 222
Tssr54280 5 142509653 to 142509664 11 - TSS region transcription start site region 54280
Papolb 5 142527740 to 142530076 2336 - protein coding gene poly (A) polymerase beta (testis specific)
Cpgi16948 5 142529710 to 142530550 840 CpG island CpG island 16948
Tssr54281 5 142530041 to 142530084 43 - TSS region transcription start site region 54281
Tssr54282 5 142530094 to 142530100 6 - TSS region transcription start site region 54282
Cpgi16949 5 142550370 to 142551448 1078 CpG island CpG island 16949
Tssr54283 5 142551027 to 142551110 83 - TSS region transcription start site region 54283
Gm43037 5 142556444 to 142556954 510 + pseudogene predicted gene 43037
Cpgi16950 5 142557390 to 142557572 182 CpG island CpG island 16950
Mmd2 5 142563480 to 142608810 45330 - protein coding gene monocyte to macrophage differentiation-associated 2
Tssr54284 5 142564494 to 142564499 5 - TSS region transcription start site region 54284
D5Dcr34 5 142595541 to 142595640 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 34
Cpgi16951 5 142608275 to 142609032 757 CpG island CpG island 16951
Tssr54285 5 142608748 to 142608780 32 - TSS region transcription start site region 54285
Tssr54286 5 142608785 to 142608808 23 - TSS region transcription start site region 54286
Gm31274 5 142622603 to 142622831 228 - pseudogene predicted gene, 31274
B630006N21Rik 5 142627697 to 142630489 2792 unclassified gene RIKEN cDNA B630006N21 gene
Cpgi16952 5 142629084 to 142630166 1082 CpG island CpG island 16952
Tssr54287 5 142629328 to 142629348 20 - TSS region transcription start site region 54287
Wipi2 5 142629535 to 142669672 40137 + protein coding gene WD repeat domain, phosphoinositide interacting 2
Tssr49580 5 142629537 to 142629589 52 + TSS region transcription start site region 49580
Tssr49581 5 142629598 to 142629615 17 + TSS region transcription start site region 49581
Tssr49582 5 142629726 to 142629763 37 + TSS region transcription start site region 49582
Tssr49583 5 142656016 to 142656021 5 + TSS region transcription start site region 49583
Gm40352 5 142671869 to 142693356 21487 - lncRNA gene predicted gene, 40352
Cpgi16953 5 142692337 to 142692537 200 CpG island CpG island 16953
Tssr49584 5 142692457 to 142692481 24 + TSS region transcription start site region 49584
Tssr49585 5 142692482 to 142692502 20 + TSS region transcription start site region 49585
Slc29a4 5 142692512 to 142722490 29978 + protein coding gene solute carrier family 29 (nucleoside transporters), member 4
Tssr49586 5 142694098 to 142694102 4 + TSS region transcription start site region 49586
Cpgi16954 5 142701581 to 142702718 1137 CpG island CpG island 16954
Tssr49587 5 142702091 to 142702153 62 + TSS region transcription start site region 49587
Tnrc18 5 142724661 to 142817662 93001 - protein coding gene trinucleotide repeat containing 18
Tssr1733 5 142733912 to 142733930 18 - TSS region transcription start site region 1733
Tssr1734 5 142734037 to 142734047 10 + TSS region transcription start site region 1734
Tssr1735 5 142734066 to 142734073 7 + TSS region transcription start site region 1735
4921504P13Rik 5 142734069 to 142735070 1001 unclassified gene RIKEN cDNA 4921504P13 gene
Tssr1736 5 142742190 to 142742195 5 - TSS region transcription start site region 1736
Tssr54288 5 142746719 to 142746721 2 - TSS region transcription start site region 54288
Cpgi16955 5 142761536 to 142761718 182 CpG island CpG island 16955
Cpgi16956 5 142764597 to 142764825 228 CpG island CpG island 16956
Tssr54289 5 142774184 to 142774199 15 - TSS region transcription start site region 54289
Cpgi16957 5 142787424 to 142788247 823 CpG island CpG island 16957
Tssr1737 5 142794686 to 142794697 11 - TSS region transcription start site region 1737
Tssr54290 5 142794720 to 142794782 62 - TSS region transcription start site region 54290
Tssr54291 5 142800422 to 142800442 20 - TSS region transcription start site region 54291
Tssr54292 5 142802984 to 142802987 3 - TSS region transcription start site region 54292
Gm31365 5 142811779 to 142815997 4218 + lncRNA gene predicted gene, 31365
Tssr49588 5 142812158 to 142812173 15 + TSS region transcription start site region 49588
Cpgi16958 5 142813812 to 142815793 1981 CpG island CpG island 16958
Tssr49589 5 142813997 to 142814003 6 + TSS region transcription start site region 49589
Tssr54293 5 142815342 to 142815361 19 - TSS region transcription start site region 54293
Tssr54294 5 142815406 to 142815477 71 - TSS region transcription start site region 54294
Tssr54295 5 142815812 to 142815861 49 - TSS region transcription start site region 54295
Cpgi16959 5 142816562 to 142818662 2100 CpG island CpG island 16959
Tssr54296 5 142816591 to 142816625 34 - TSS region transcription start site region 54296
Tssr49590 5 142816725 to 142816741 16 + TSS region transcription start site region 49590
Tssr54297 5 142817398 to 142817420 22 - TSS region transcription start site region 54297
Tssr54298 5 142817546 to 142817558 12 - TSS region transcription start site region 54298
Tssr54299 5 142817583 to 142817641 58 - TSS region transcription start site region 54299
Tssr54300 5 142817654 to 142817668 14 - TSS region transcription start site region 54300
Tssr49591 5 142817883 to 142817886 3 + TSS region transcription start site region 49591
Tssr49592 5 142818031 to 142818093 62 + TSS region transcription start site region 49592
Tssr54301 5 142818932 to 142818933 1 - TSS region transcription start site region 54301
Tssr49593 5 142818994 to 142819003 9 + TSS region transcription start site region 49593
Cpgi16960 5 142819545 to 142819924 379 CpG island CpG island 16960
Cpgi16961 5 142820224 to 142822027 1803 CpG island CpG island 16961
Tssr54302 5 142821285 to 142821290 5 - TSS region transcription start site region 54302
Tssr54303 5 142821441 to 142821456 15 - TSS region transcription start site region 54303
Tssr54304 5 142821681 to 142821705 24 - TSS region transcription start site region 54304
Tssr49594 5 142821784 to 142821818 34 + TSS region transcription start site region 49594
Tssr54305 5 142821806 to 142821823 17 - TSS region transcription start site region 54305
Tssr49595 5 142821863 to 142821895 32 + TSS region transcription start site region 49595
Tssr54306 5 142822348 to 142822388 40 - TSS region transcription start site region 54306
Tssr49596 5 142822584 to 142822598 14 + TSS region transcription start site region 49596
Tssr54307 5 142822810 to 142822821 11 - TSS region transcription start site region 54307
Tssr54308 5 142822837 to 142822855 18 - TSS region transcription start site region 54308
Tssr54309 5 142822964 to 142823000 36 - TSS region transcription start site region 54309
Gm15770 5 142852616 to 142853199 583 - pseudogene predicted gene 15770
Fbxl18 5 142871787 to 142895421 23634 - protein coding gene F-box and leucine-rich repeat protein 18
D430018E03Rik 5 142874077 to 142878373 4296 - sense intronic lncRNA gene RIKEN cDNA D430018E03 gene
Cpgi16962 5 142878707 to 142878926 219 CpG island CpG island 16962
Cpgi16963 5 142894771 to 142895590 819 CpG island CpG island 16963
Tssr54310 5 142895161 to 142895229 68 - TSS region transcription start site region 54310
Tssr54311 5 142895233 to 142895242 9 - TSS region transcription start site region 54311
Tssr49597 5 142895286 to 142895349 63 + TSS region transcription start site region 49597
Gm38733 5 142895395 to 142897924 2529 + lncRNA gene predicted gene, 38733
Tssr54312 5 142901397 to 142901399 2 - TSS region transcription start site region 54312
Actb 5 142903115 to 142906754 3639 - protein coding gene actin, beta
Tssr49598 5 142903116 to 142903140 24 + TSS region transcription start site region 49598
Tssr54313 5 142903140 to 142903169 29 - TSS region transcription start site region 54313
Tssr54314 5 142903253 to 142903287 34 - TSS region transcription start site region 54314
Tssr54315 5 142903289 to 142903309 20 - TSS region transcription start site region 54315
Tssr54316 5 142903321 to 142903333 12 - TSS region transcription start site region 54316
Tssr54317 5 142903391 to 142903419 28 - TSS region transcription start site region 54317
Tssr54318 5 142903484 to 142903507 23 - TSS region transcription start site region 54318
Tssr54319 5 142903526 to 142903575 49 - TSS region transcription start site region 54319
Tssr54320 5 142903601 to 142903613 12 - TSS region transcription start site region 54320
Tssr54321 5 142903647 to 142903651 4 - TSS region transcription start site region 54321
Tssr49599 5 142903684 to 142903723 39 + TSS region transcription start site region 49599
Tssr54322 5 142903705 to 142903730 25 - TSS region transcription start site region 54322
Tssr49600 5 142903764 to 142903787 23 + TSS region transcription start site region 49600
Tssr54323 5 142903794 to 142903800 6 - TSS region transcription start site region 54323
Tssr54324 5 142903801 to 142903850 49 - TSS region transcription start site region 54324
Tssr54325 5 142903909 to 142903932 23 - TSS region transcription start site region 54325
Tssr49601 5 142904130 to 142904174 44 + TSS region transcription start site region 49601
Tssr49602 5 142904175 to 142904187 12 + TSS region transcription start site region 49602
Tssr54326 5 142904176 to 142904207 31 - TSS region transcription start site region 54326
Tssr49603 5 142904353 to 142904383 30 + TSS region transcription start site region 49603
Tssr54327 5 142904383 to 142904415 32 - TSS region transcription start site region 54327
Tssr49604 5 142904450 to 142904470 20 + TSS region transcription start site region 49604
Tssr54328 5 142904474 to 142904510 36 - TSS region transcription start site region 54328
Tssr49605 5 142904513 to 142904547 34 + TSS region transcription start site region 49605
Tssr54329 5 142904563 to 142904601 38 - TSS region transcription start site region 54329