Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:140971497-142485586

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa24 5 119806972 to 141714711 21907739 QTL B.burgdorferi-associated arthritis 24
Elmaz2 5 125101165 to 141714711 16613546 QTL elevated maze behavior 2
Card11 5 140872990 to 141000582 127592 - protein coding gene caspase recruitment domain family, member 11
Tssr54267 5 140992362 to 140992399 37 - TSS region transcription start site region 54267
D5Dcr29 5 140994339 to 140994443 104 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 29
Tssr54268 5 140995574 to 140995582 8 - TSS region transcription start site region 54268
Tssr54269 5 140995768 to 140995786 18 - TSS region transcription start site region 54269
Tssr54270 5 140995827 to 140995841 14 - TSS region transcription start site region 54270
Tssr54271 5 141000558 to 141000589 31 - TSS region transcription start site region 54271
Tssr54272 5 141000590 to 141000632 42 - TSS region transcription start site region 54272
Tssr54273 5 141000634 to 141000649 15 - TSS region transcription start site region 54273
Tssr54274 5 141000656 to 141000679 23 - TSS region transcription start site region 54274
Gm38729 5 141005001 to 141013486 8485 - lncRNA gene predicted gene, 38729
D5Dcr5 5 141022472 to 141022572 100 DNA segment DNA segment, Chr 5, Derry C. Roopenian 5
Gm44385 5 141029928 to 141030008 80 + miRNA gene predicted gene, 44385
Cpgi16938 5 141044300 to 141044484 184 CpG island CpG island 16938
Gm38730 5 141064235 to 141074685 10450 + lncRNA gene predicted gene, 38730
Gm26113 5 141080431 to 141080509 78 + miRNA gene predicted gene, 26113
Tssr49564 5 141116324 to 141116329 5 + TSS region transcription start site region 49564
Gm30866 5 141124859 to 141158981 34122 + lncRNA gene predicted gene, 30866
D5Mit380 5 141164308 to 141164427 119 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 380
D5Dcr30 5 141194598 to 141194693 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 30
D5Mit328 5 141211202 to 141211299 97 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 328
Tssr54275 5 141230296 to 141230300 4 - TSS region transcription start site region 54275
D5Dcr6 5 141238500 to 141238596 96 DNA segment DNA segment, Chr 5, Derry C. Roopenian 6
Cpgi16939 5 141240487 to 141242356 1869 CpG island CpG island 16939
Sdk1 5 141241497 to 142215586 974089 + protein coding gene sidekick cell adhesion molecule 1
Tssr49565 5 141241524 to 141241542 18 + TSS region transcription start site region 49565
Tssr49566 5 141241554 to 141241569 15 + TSS region transcription start site region 49566
Tssr49567 5 141241593 to 141241605 12 + TSS region transcription start site region 49567
Tssr49568 5 141241629 to 141241643 14 + TSS region transcription start site region 49568
Cpgi16940 5 141243428 to 141243725 297 CpG island CpG island 16940
D5Dcr31 5 141264885 to 141264983 98 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 31
Gm6433 5 141267581 to 141268455 874 - pseudogene predicted gene 6433
Tssr54276 5 141268480 to 141268481 1 - TSS region transcription start site region 54276
Gm43708 5 141297143 to 141298103 960 - unclassified gene predicted gene 43708
Gm43556 5 141307387 to 141308067 680 - unclassified gene predicted gene 43556
Gm43557 5 141315765 to 141318134 2369 - unclassified gene predicted gene 43557
Gm16035 5 141373179 to 141380926 7747 - antisense lncRNA gene predicted gene 16035
Tssr54277 5 141380928 to 141380947 19 - TSS region transcription start site region 54277
D5Dcr7 5 141457834 to 141457932 98 DNA segment DNA segment, Chr 5, Derry C. Roopenian 7
D5Dcr32 5 141553231 to 141553327 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 32
Gm24131 5 141566143 to 141566249 106 - snRNA gene predicted gene, 24131
D5Mit142 5 141572510 to 141572641 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 142
3200001G23Rik 5 141593881 to 141595077 1196 unclassified gene RIKEN cDNA 3200001G23 gene
Gm16036 5 141595985 to 141616002 20017 - antisense lncRNA gene predicted gene 16036
D5Dcr33 5 141619567 to 141619663 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 33
D5Mit101 5 141714580 to 141714711 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 101
Lbw3 5 141714580 to 141714711 131 QTL lupus NZB x NZW 3
D5Mit375 5 141793572 to 141793682 110 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 375
Tssr49569 5 141848020 to 141848023 3 + TSS region transcription start site region 49569
Tssr49570 5 141856692 to 141856711 19 + TSS region transcription start site region 49570
Tssr49571 5 141867550 to 141867551 1 + TSS region transcription start site region 49571
D5Ertd525e 5 142060001 to 142060250 249 DNA segment DNA segment, Chr 5, ERATO Doi 525, expressed
Cpgi16941 5 142096643 to 142096910 267 CpG island CpG island 16941
D330005C11Rik 5 142109430 to 142112592 3162 unclassified gene RIKEN cDNA D330005C11 gene
Pbwg13 5 142147702 to 142147843 141 QTL postnatal body weight growth 13
D5Mit51 5 142147702 to 142147843 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 51
Cpgi16942 5 142172468 to 142172641 173 CpG island CpG island 16942
Gm26970 5 142283106 to 142284069 963 + pseudogene predicted gene, 26970
D5Mit384 5 142310943 to 142311073 130 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-384
Tssr49572 5 142341334 to 142341346 12 + TSS region transcription start site region 49572
Gm30998 5 142350151 to 142363303 13152 - lncRNA gene predicted gene, 30998
Tssr49573 5 142358039 to 142358043 4 + TSS region transcription start site region 49573
Gm31068 5 142365022 to 142367200 2178 + lncRNA gene predicted gene, 31068
Tssr49574 5 142365728 to 142365738 10 + TSS region transcription start site region 49574
Cpgi16943 5 142367075 to 142368040 965 CpG island CpG island 16943
Tssr49575 5 142367778 to 142367813 35 + TSS region transcription start site region 49575
Gm31127 5 142380088 to 142388209 8121 - lncRNA gene predicted gene, 31127
Cpgi16944 5 142401007 to 142402565 1558 CpG island CpG island 16944
Tssr49576 5 142401484 to 142401532 48 + TSS region transcription start site region 49576
Foxk1 5 142401497 to 142462011 60514 + protein coding gene forkhead box K1
Tssr54278 5 142424815 to 142424829 14 - TSS region transcription start site region 54278
Tssr49577 5 142441106 to 142441110 4 + TSS region transcription start site region 49577
Cpgi16945 5 142441868 to 142442168 300 CpG island CpG island 16945
Tssr49578 5 142453958 to 142453991 33 + TSS region transcription start site region 49578
Gm10868 5 142456517 to 142457582 1065 unclassified gene predicted gene 10868
Cpgi16946 5 142463679 to 142464421 742 CpG island CpG island 16946
Ap5z1 5 142463944 to 142478710 14766 + protein coding gene adaptor-related protein complex 5, zeta 1 subunit
Tssr49579 5 142464018 to 142464072 54 + TSS region transcription start site region 49579
Cpgi16947 5 142478989 to 142479161 172 CpG island CpG island 16947
Radil 5 142484839 to 142551098 66259 - protein coding gene Ras association and DIL domains