Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:140693647-145113651

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636 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa24 5 119806972 to 141714711 21907739 QTL B.burgdorferi-associated arthritis 24
Elmaz2 5 125101165 to 141714711 16613546 QTL elevated maze behavior 2
Xiaf2 5 126090176 to 144640558 18550382 heritable phenotypic marker X inactivation autosomal factor 2
Iqce 5 140662553 to 140702429 39876 - protein coding gene IQ motif containing E
Cpgi16929 5 140701566 to 140702450 884 CpG island CpG island 16929
Tssr54242 5 140702023 to 140702035 12 - TSS region transcription start site region 54242
Tssr54243 5 140702048 to 140702068 20 - TSS region transcription start site region 54243
Tssr54244 5 140702220 to 140702236 16 - TSS region transcription start site region 54244
Tssr54245 5 140702241 to 140702321 80 - TSS region transcription start site region 54245
Tssr49556 5 140702464 to 140702473 9 + TSS region transcription start site region 49556
Cpgi16930 5 140704416 to 140705499 1083 CpG island CpG island 16930
Tssr49557 5 140705006 to 140705037 31 + TSS region transcription start site region 49557
Brat1 5 140705011 to 140719379 14368 + protein coding gene BRCA1-associated ATM activator 1
Tssr49558 5 140705076 to 140705091 15 + TSS region transcription start site region 49558
Tssr49559 5 140705099 to 140705110 11 + TSS region transcription start site region 49559
Cpgi16931 5 140724038 to 140724245 207 CpG island CpG island 16931
Amz1 5 140724127 to 140753312 29185 + protein coding gene archaelysin family metallopeptidase 1
Cpgi16932 5 140735358 to 140735915 557 CpG island CpG island 16932
Tssr49560 5 140735531 to 140735548 17 + TSS region transcription start site region 49560
Tssr49561 5 140735556 to 140735567 11 + TSS region transcription start site region 49561
Gm30745 5 140748690 to 140750087 1397 - lncRNA gene predicted gene, 30745
D5Dcr26 5 140753316 to 140753418 102 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 26
Tssr54246 5 140759938 to 140759964 26 - TSS region transcription start site region 54246
Gna12 5 140759944 to 140830431 70487 - protein coding gene guanine nucleotide binding protein, alpha 12
Tssr54247 5 140760264 to 140760286 22 - TSS region transcription start site region 54247
Tssr54248 5 140760444 to 140760462 18 - TSS region transcription start site region 54248
Tssr54249 5 140760469 to 140760496 27 - TSS region transcription start site region 54249
Tssr54250 5 140760497 to 140760518 21 - TSS region transcription start site region 54250
Tssr54251 5 140760533 to 140760553 20 - TSS region transcription start site region 54251
Tssr49562 5 140767955 to 140767971 16 + TSS region transcription start site region 49562
Tssr54252 5 140773699 to 140773704 5 - TSS region transcription start site region 54252
D5Mit247 5 140800177 to 140800337 160 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 247
Tssr54253 5 140808522 to 140808527 5 - TSS region transcription start site region 54253
Tssr54254 5 140812083 to 140812086 3 - TSS region transcription start site region 54254
D5Mit327 5 140821714 to 140821812 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 327
Tssr54255 5 140826730 to 140826735 5 - TSS region transcription start site region 54255
Tssr54256 5 140826774 to 140826818 44 - TSS region transcription start site region 54256
Tssr54257 5 140826845 to 140826868 23 - TSS region transcription start site region 54257
Cpgi16933 5 140829691 to 140830910 1219 CpG island CpG island 16933
Tssr54258 5 140829759 to 140829771 12 - TSS region transcription start site region 54258
Tssr1730 5 140830154 to 140830192 38 - TSS region transcription start site region 1730
Tssr1731 5 140830265 to 140830273 8 - TSS region transcription start site region 1731
Tssr1732 5 140830311 to 140830321 10 - TSS region transcription start site region 1732
Tssr54259 5 140830337 to 140830348 11 - TSS region transcription start site region 54259
Tssr54260 5 140830363 to 140830384 21 - TSS region transcription start site region 54260
Tssr54261 5 140830403 to 140830425 22 - TSS region transcription start site region 54261
Tssr54262 5 140830430 to 140830453 23 - TSS region transcription start site region 54262
Tssr54263 5 140830455 to 140830467 12 - TSS region transcription start site region 54263
Tssr54264 5 140841969 to 140841985 16 - TSS region transcription start site region 54264
Gm30804 5 140852510 to 140880285 27775 + lncRNA gene predicted gene, 30804
Card11 5 140872990 to 141000582 127592 - protein coding gene caspase recruitment domain family, member 11
Cpgi16934 5 140873339 to 140873511 172 CpG island CpG island 16934
Cpgi16935 5 140889942 to 140890298 356 CpG island CpG island 16935
Cpgi16936 5 140906684 to 140906852 168 CpG island CpG island 16936
D5Dcr27 5 140908731 to 140908835 104 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 27
D5Dcr28 5 140920014 to 140920113 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 28
D5Dcr3 5 140922037 to 140922134 97 DNA segment DNA segment, Chr 5, Derry C. Roopenian 3
Tssr54265 5 140936140 to 140936141 1 - TSS region transcription start site region 54265
Cpgi16937 5 140944401 to 140944558 157 CpG island CpG island 16937
Tssr49563 5 140956551 to 140956572 21 + TSS region transcription start site region 49563
D5Mit99 5 140957413 to 140957611 198 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 99
D5Dcr4 5 140957425 to 140957526 101 DNA segment DNA segment, Chr 5, Derry C. Roopenian 4
Tssr54266 5 140965255 to 140965280 25 - TSS region transcription start site region 54266
Tssr54267 5 140992362 to 140992399 37 - TSS region transcription start site region 54267
D5Dcr29 5 140994339 to 140994443 104 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 29
Tssr54268 5 140995574 to 140995582 8 - TSS region transcription start site region 54268
Tssr54269 5 140995768 to 140995786 18 - TSS region transcription start site region 54269
Tssr54270 5 140995827 to 140995841 14 - TSS region transcription start site region 54270
Tssr54271 5 141000558 to 141000589 31 - TSS region transcription start site region 54271
Tssr54272 5 141000590 to 141000632 42 - TSS region transcription start site region 54272
Tssr54273 5 141000634 to 141000649 15 - TSS region transcription start site region 54273
Tssr54274 5 141000656 to 141000679 23 - TSS region transcription start site region 54274
Gm38729 5 141005001 to 141013486 8485 - lncRNA gene predicted gene, 38729
D5Dcr5 5 141022472 to 141022572 100 DNA segment DNA segment, Chr 5, Derry C. Roopenian 5
Gm44385 5 141029928 to 141030008 80 + miRNA gene predicted gene, 44385
Cpgi16938 5 141044300 to 141044484 184 CpG island CpG island 16938
Gm38730 5 141064235 to 141074685 10450 + lncRNA gene predicted gene, 38730
Gm26113 5 141080431 to 141080509 78 + miRNA gene predicted gene, 26113
Tssr49564 5 141116324 to 141116329 5 + TSS region transcription start site region 49564
Gm30866 5 141124859 to 141158981 34122 + lncRNA gene predicted gene, 30866
D5Mit380 5 141164308 to 141164427 119 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 380
D5Dcr30 5 141194598 to 141194693 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 30
D5Mit328 5 141211202 to 141211299 97 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 328
Tssr54275 5 141230296 to 141230300 4 - TSS region transcription start site region 54275
D5Dcr6 5 141238500 to 141238596 96 DNA segment DNA segment, Chr 5, Derry C. Roopenian 6
Cpgi16939 5 141240487 to 141242356 1869 CpG island CpG island 16939
Sdk1 5 141241497 to 142215586 974089 + protein coding gene sidekick cell adhesion molecule 1
Tssr49565 5 141241524 to 141241542 18 + TSS region transcription start site region 49565
Tssr49566 5 141241554 to 141241569 15 + TSS region transcription start site region 49566
Tssr49567 5 141241593 to 141241605 12 + TSS region transcription start site region 49567
Tssr49568 5 141241629 to 141241643 14 + TSS region transcription start site region 49568
Cpgi16940 5 141243428 to 141243725 297 CpG island CpG island 16940
D5Dcr31 5 141264885 to 141264983 98 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 31
Gm6433 5 141267581 to 141268455 874 - pseudogene predicted gene 6433
Tssr54276 5 141268480 to 141268481 1 - TSS region transcription start site region 54276
Gm43708 5 141297143 to 141298103 960 - unclassified gene predicted gene 43708
Gm43556 5 141307387 to 141308067 680 - unclassified gene predicted gene 43556
Gm43557 5 141315765 to 141318134 2369 - unclassified gene predicted gene 43557
Gm16035 5 141373179 to 141380926 7747 - antisense lncRNA gene predicted gene 16035
Tssr54277 5 141380928 to 141380947 19 - TSS region transcription start site region 54277
D5Dcr7 5 141457834 to 141457932 98 DNA segment DNA segment, Chr 5, Derry C. Roopenian 7
D5Dcr32 5 141553231 to 141553327 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 32
Gm24131 5 141566143 to 141566249 106 - snRNA gene predicted gene, 24131
D5Mit142 5 141572510 to 141572641 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 142
3200001G23Rik 5 141593881 to 141595077 1196 unclassified gene RIKEN cDNA 3200001G23 gene
Gm16036 5 141595985 to 141616002 20017 - antisense lncRNA gene predicted gene 16036
D5Dcr33 5 141619567 to 141619663 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 33
D5Mit101 5 141714580 to 141714711 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 101
Lbw3 5 141714580 to 141714711 131 QTL lupus NZB x NZW 3
D5Mit375 5 141793572 to 141793682 110 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 375
Tssr49569 5 141848020 to 141848023 3 + TSS region transcription start site region 49569
Tssr49570 5 141856692 to 141856711 19 + TSS region transcription start site region 49570
Tssr49571 5 141867550 to 141867551 1 + TSS region transcription start site region 49571
D5Ertd525e 5 142060001 to 142060250 249 DNA segment DNA segment, Chr 5, ERATO Doi 525, expressed
Cpgi16941 5 142096643 to 142096910 267 CpG island CpG island 16941
D330005C11Rik 5 142109430 to 142112592 3162 unclassified gene RIKEN cDNA D330005C11 gene
Pbwg13 5 142147702 to 142147843 141 QTL postnatal body weight growth 13
D5Mit51 5 142147702 to 142147843 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 51
Cpgi16942 5 142172468 to 142172641 173 CpG island CpG island 16942
Gm26970 5 142283106 to 142284069 963 + pseudogene predicted gene, 26970
D5Mit384 5 142310943 to 142311073 130 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-384
Tssr49572 5 142341334 to 142341346 12 + TSS region transcription start site region 49572
Gm30998 5 142350151 to 142363303 13152 - lncRNA gene predicted gene, 30998
Tssr49573 5 142358039 to 142358043 4 + TSS region transcription start site region 49573
Gm31068 5 142365022 to 142367200 2178 + lncRNA gene predicted gene, 31068
Tssr49574 5 142365728 to 142365738 10 + TSS region transcription start site region 49574
Cpgi16943 5 142367075 to 142368040 965 CpG island CpG island 16943
Tssr49575 5 142367778 to 142367813 35 + TSS region transcription start site region 49575
Gm31127 5 142380088 to 142388209 8121 - lncRNA gene predicted gene, 31127
Cpgi16944 5 142401007 to 142402565 1558 CpG island CpG island 16944
Tssr49576 5 142401484 to 142401532 48 + TSS region transcription start site region 49576
Foxk1 5 142401497 to 142462011 60514 + protein coding gene forkhead box K1
Tssr54278 5 142424815 to 142424829 14 - TSS region transcription start site region 54278
Tssr49577 5 142441106 to 142441110 4 + TSS region transcription start site region 49577
Cpgi16945 5 142441868 to 142442168 300 CpG island CpG island 16945
Tssr49578 5 142453958 to 142453991 33 + TSS region transcription start site region 49578
Gm10868 5 142456517 to 142457582 1065 unclassified gene predicted gene 10868
Cpgi16946 5 142463679 to 142464421 742 CpG island CpG island 16946
Ap5z1 5 142463944 to 142478710 14766 + protein coding gene adaptor-related protein complex 5, zeta 1 subunit
Tssr49579 5 142464018 to 142464072 54 + TSS region transcription start site region 49579
Cpgi16947 5 142478989 to 142479161 172 CpG island CpG island 16947
Radil 5 142484839 to 142551098 66259 - protein coding gene Ras association and DIL domains
Gm38732 5 142500743 to 142514411 13668 + lncRNA gene predicted gene, 38732
Tssr54279 5 142501797 to 142501822 25 - TSS region transcription start site region 54279
D5Mit222 5 142503346 to 142503453 107 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 222
Tssr54280 5 142509653 to 142509664 11 - TSS region transcription start site region 54280
Papolb 5 142527740 to 142530076 2336 - protein coding gene poly (A) polymerase beta (testis specific)
Cpgi16948 5 142529710 to 142530550 840 CpG island CpG island 16948
Tssr54281 5 142530041 to 142530084 43 - TSS region transcription start site region 54281
Tssr54282 5 142530094 to 142530100 6 - TSS region transcription start site region 54282
Cpgi16949 5 142550370 to 142551448 1078 CpG island CpG island 16949
Tssr54283 5 142551027 to 142551110 83 - TSS region transcription start site region 54283
Gm43037 5 142556444 to 142556954 510 + pseudogene predicted gene 43037
Cpgi16950 5 142557390 to 142557572 182 CpG island CpG island 16950
Mmd2 5 142563480 to 142608810 45330 - protein coding gene monocyte to macrophage differentiation-associated 2
Tssr54284 5 142564494 to 142564499 5 - TSS region transcription start site region 54284
D5Dcr34 5 142595541 to 142595640 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 34
Cpgi16951 5 142608275 to 142609032 757 CpG island CpG island 16951
Tssr54285 5 142608748 to 142608780 32 - TSS region transcription start site region 54285
Tssr54286 5 142608785 to 142608808 23 - TSS region transcription start site region 54286
Gm31274 5 142622603 to 142622831 228 - pseudogene predicted gene, 31274
B630006N21Rik 5 142627697 to 142630489 2792 unclassified gene RIKEN cDNA B630006N21 gene
Cpgi16952 5 142629084 to 142630166 1082 CpG island CpG island 16952
Tssr54287 5 142629328 to 142629348 20 - TSS region transcription start site region 54287
Wipi2 5 142629535 to 142669672 40137 + protein coding gene WD repeat domain, phosphoinositide interacting 2
Tssr49580 5 142629537 to 142629589 52 + TSS region transcription start site region 49580
Tssr49581 5 142629598 to 142629615 17 + TSS region transcription start site region 49581
Tssr49582 5 142629726 to 142629763 37 + TSS region transcription start site region 49582
Tssr49583 5 142656016 to 142656021 5 + TSS region transcription start site region 49583
Gm40352 5 142671869 to 142693356 21487 - lncRNA gene predicted gene, 40352
Cpgi16953 5 142692337 to 142692537 200 CpG island CpG island 16953
Tssr49584 5 142692457 to 142692481 24 + TSS region transcription start site region 49584
Tssr49585 5 142692482 to 142692502 20 + TSS region transcription start site region 49585
Slc29a4 5 142692512 to 142722490 29978 + protein coding gene solute carrier family 29 (nucleoside transporters), member 4
Tssr49586 5 142694098 to 142694102 4 + TSS region transcription start site region 49586
Cpgi16954 5 142701581 to 142702718 1137 CpG island CpG island 16954
Tssr49587 5 142702091 to 142702153 62 + TSS region transcription start site region 49587
Tnrc18 5 142724661 to 142817662 93001 - protein coding gene trinucleotide repeat containing 18
Tssr1733 5 142733912 to 142733930 18 - TSS region transcription start site region 1733
Tssr1734 5 142734037 to 142734047 10 + TSS region transcription start site region 1734
Tssr1735 5 142734066 to 142734073 7 + TSS region transcription start site region 1735
4921504P13Rik 5 142734069 to 142735070 1001 unclassified gene RIKEN cDNA 4921504P13 gene
Tssr1736 5 142742190 to 142742195 5 - TSS region transcription start site region 1736
Tssr54288 5 142746719 to 142746721 2 - TSS region transcription start site region 54288
Cpgi16955 5 142761536 to 142761718 182 CpG island CpG island 16955
Cpgi16956 5 142764597 to 142764825 228 CpG island CpG island 16956
Tssr54289 5 142774184 to 142774199 15 - TSS region transcription start site region 54289
Cpgi16957 5 142787424 to 142788247 823 CpG island CpG island 16957
Tssr1737 5 142794686 to 142794697 11 - TSS region transcription start site region 1737
Tssr54290 5 142794720 to 142794782 62 - TSS region transcription start site region 54290
Tssr54291 5 142800422 to 142800442 20 - TSS region transcription start site region 54291
Tssr54292 5 142802984 to 142802987 3 - TSS region transcription start site region 54292
Gm31365 5 142811779 to 142815997 4218 + lncRNA gene predicted gene, 31365
Tssr49588 5 142812158 to 142812173 15 + TSS region transcription start site region 49588
Cpgi16958 5 142813812 to 142815793 1981 CpG island CpG island 16958
Tssr49589 5 142813997 to 142814003 6 + TSS region transcription start site region 49589
Tssr54293 5 142815342 to 142815361 19 - TSS region transcription start site region 54293
Tssr54294 5 142815406 to 142815477 71 - TSS region transcription start site region 54294
Tssr54295 5 142815812 to 142815861 49 - TSS region transcription start site region 54295
Cpgi16959 5 142816562 to 142818662 2100 CpG island CpG island 16959