Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:140496398-140746430

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nmf15 5 108614643 to 140687148 32072505 heritable phenotypic marker neuroscience mutagenesis facility, 15
D5Dcr25 5 140502074 to 140502169 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 25
Cpgi16923 5 140502627 to 140502850 223 CpG island CpG island 16923
Gm38728 5 140503087 to 140518270 15183 - lncRNA gene predicted gene, 38728
Cpgi16924 5 140505322 to 140506489 1167 CpG island CpG island 16924
Chst12 5 140505580 to 140525238 19658 + protein coding gene carbohydrate sulfotransferase 12
Tssr49550 5 140505620 to 140505666 46 + TSS region transcription start site region 49550
Tssr54219 5 140507597 to 140507601 4 - TSS region transcription start site region 54219
Tssr49551 5 140507734 to 140507743 9 + TSS region transcription start site region 49551
Gm42808 5 140545486 to 140546392 906 - lincRNA gene predicted gene 42808
Gm32158 5 140546435 to 140546838 403 + pseudogene predicted gene, 32158
Grifin 5 140563119 to 140565071 1952 - protein coding gene galectin-related inter-fiber protein
Tssr54220 5 140565060 to 140565072 12 - TSS region transcription start site region 54220
Gm30603 5 140589100 to 140596595 7495 - lncRNA gene predicted gene, 30603
Tssr54221 5 140596548 to 140596580 32 - TSS region transcription start site region 54221
Tssr54222 5 140596583 to 140596603 20 - TSS region transcription start site region 54222
Gm43703 5 140605789 to 140606551 762 - lincRNA gene predicted gene 43703
Cpgi16925 5 140606283 to 140608100 1817 CpG island CpG island 16925
Tssr49552 5 140607334 to 140607352 18 + TSS region transcription start site region 49552
Lfng 5 140607341 to 140615545 8204 + protein coding gene LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Tssr49553 5 140607703 to 140607754 51 + TSS region transcription start site region 49553
Cpgi16926 5 140608705 to 140608865 160 CpG island CpG island 16926
Tssr54223 5 140609682 to 140609691 9 - TSS region transcription start site region 54223
Cpgi16927 5 140610589 to 140611173 584 CpG island CpG island 16927
Tssr49554 5 140612541 to 140612577 36 + TSS region transcription start site region 49554
Tssr49555 5 140616990 to 140617009 19 + TSS region transcription start site region 49555
Ttyh3 5 140620578 to 140649031 28453 - protein coding gene tweety family member 3
Tssr54224 5 140621293 to 140621308 15 - TSS region transcription start site region 54224
Tssr54225 5 140621398 to 140621430 32 - TSS region transcription start site region 54225
Tssr54226 5 140622829 to 140622851 22 - TSS region transcription start site region 54226
Tssr54227 5 140623064 to 140623083 19 - TSS region transcription start site region 54227
Tssr54228 5 140623237 to 140623248 11 - TSS region transcription start site region 54228
Tssr54229 5 140623316 to 140623333 17 - TSS region transcription start site region 54229
Tssr54230 5 140623409 to 140623445 36 - TSS region transcription start site region 54230
Tssr54231 5 140623451 to 140623472 21 - TSS region transcription start site region 54231
Tssr54232 5 140623475 to 140623500 25 - TSS region transcription start site region 54232
Tssr54233 5 140627264 to 140627280 16 - TSS region transcription start site region 54233
Tssr54234 5 140629464 to 140629483 19 - TSS region transcription start site region 54234
Tssr54235 5 140636018 to 140636033 15 - TSS region transcription start site region 54235
Tssr54236 5 140636060 to 140636065 5 - TSS region transcription start site region 54236
Cpgi16928 5 140648071 to 140649634 1563 CpG island CpG island 16928
Tssr54237 5 140648938 to 140648949 11 - TSS region transcription start site region 54237
Tssr54238 5 140648953 to 140648964 11 - TSS region transcription start site region 54238
Tssr54239 5 140648980 to 140649014 34 - TSS region transcription start site region 54239
Tssr54240 5 140649018 to 140649052 34 - TSS region transcription start site region 54240
Iqce 5 140662553 to 140702429 39876 - protein coding gene IQ motif containing E
D5Mit292 5 140687038 to 140687148 110 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 292
Tssr54241 5 140692532 to 140692557 25 - TSS region transcription start site region 54241
Cpgi16929 5 140701566 to 140702450 884 CpG island CpG island 16929
Tssr54242 5 140702023 to 140702035 12 - TSS region transcription start site region 54242
Tssr54243 5 140702048 to 140702068 20 - TSS region transcription start site region 54243
Tssr54244 5 140702220 to 140702236 16 - TSS region transcription start site region 54244
Tssr54245 5 140702241 to 140702321 80 - TSS region transcription start site region 54245
Tssr49556 5 140702464 to 140702473 9 + TSS region transcription start site region 49556
Cpgi16930 5 140704416 to 140705499 1083 CpG island CpG island 16930
Tssr49557 5 140705006 to 140705037 31 + TSS region transcription start site region 49557
Brat1 5 140705011 to 140719379 14368 + protein coding gene BRCA1-associated ATM activator 1
Tssr49558 5 140705076 to 140705091 15 + TSS region transcription start site region 49558
Tssr49559 5 140705099 to 140705110 11 + TSS region transcription start site region 49559
Cpgi16931 5 140724038 to 140724245 207 CpG island CpG island 16931
Amz1 5 140724127 to 140753312 29185 + protein coding gene archaelysin family metallopeptidase 1
Cpgi16932 5 140735358 to 140735915 557 CpG island CpG island 16932
Tssr49560 5 140735531 to 140735548 17 + TSS region transcription start site region 49560
Tssr49561 5 140735556 to 140735567 11 + TSS region transcription start site region 49561