Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:140380580-140650238

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snx8 5 140340298 to 140389247 48949 - protein coding gene sorting nexin 8
Tssr54213 5 140382718 to 140382757 39 - TSS region transcription start site region 54213
Tssr54214 5 140386156 to 140386161 5 - TSS region transcription start site region 54214
Tssr49541 5 140388250 to 140388259 9 + TSS region transcription start site region 49541
Cpgi16921 5 140388757 to 140389656 899 CpG island CpG island 16921
Tssr54215 5 140389167 to 140389176 9 - TSS region transcription start site region 54215
Tssr54216 5 140389188 to 140389254 66 - TSS region transcription start site region 54216
Tssr54217 5 140389256 to 140389263 7 - TSS region transcription start site region 54217
Tssr49542 5 140392930 to 140392957 27 + TSS region transcription start site region 49542
Gm30550 5 140406397 to 140410357 3960 + lncRNA gene predicted gene, 30550
Cpgi16922 5 140418285 to 140420283 1998 CpG island CpG island 16922
Tssr54218 5 140418726 to 140418756 30 - TSS region transcription start site region 54218
Tssr49543 5 140419248 to 140419377 129 + TSS region transcription start site region 49543
Eif3b 5 140419328 to 140443360 24032 + protein coding gene eukaryotic translation initiation factor 3, subunit B
Tssr49544 5 140419394 to 140419405 11 + TSS region transcription start site region 49544
Tssr49545 5 140419408 to 140419443 35 + TSS region transcription start site region 49545
D5Dcr24 5 140427129 to 140427228 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 24
Mir7038 5 140427339 to 140427409 70 + miRNA gene microRNA 7038
Tssr49546 5 140436249 to 140436288 39 + TSS region transcription start site region 49546
Tssr49547 5 140437180 to 140437191 11 + TSS region transcription start site region 49547
Tssr49548 5 140437313 to 140437326 13 + TSS region transcription start site region 49548
Tssr49549 5 140441067 to 140441083 16 + TSS region transcription start site region 49549
Gm42805 5 140453418 to 140453891 473 - pseudogene predicted gene 42805
Gm4869 5 140456901 to 140495884 38983 + protein coding gene predicted gene 4869
D5Dcr25 5 140502074 to 140502169 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 25
Cpgi16923 5 140502627 to 140502850 223 CpG island CpG island 16923
Gm38728 5 140503087 to 140518270 15183 - lncRNA gene predicted gene, 38728
Cpgi16924 5 140505322 to 140506489 1167 CpG island CpG island 16924
Chst12 5 140505580 to 140525238 19658 + protein coding gene carbohydrate sulfotransferase 12
Tssr49550 5 140505620 to 140505666 46 + TSS region transcription start site region 49550
Tssr54219 5 140507597 to 140507601 4 - TSS region transcription start site region 54219
Tssr49551 5 140507734 to 140507743 9 + TSS region transcription start site region 49551
Gm42808 5 140545486 to 140546392 906 - lincRNA gene predicted gene 42808
Gm32158 5 140546435 to 140546838 403 + pseudogene predicted gene, 32158
Grifin 5 140563119 to 140565071 1952 - protein coding gene galectin-related inter-fiber protein
Tssr54220 5 140565060 to 140565072 12 - TSS region transcription start site region 54220
Gm30603 5 140589100 to 140596595 7495 - lncRNA gene predicted gene, 30603
Tssr54221 5 140596548 to 140596580 32 - TSS region transcription start site region 54221
Tssr54222 5 140596583 to 140596603 20 - TSS region transcription start site region 54222
Gm43703 5 140605789 to 140606551 762 - lincRNA gene predicted gene 43703
Cpgi16925 5 140606283 to 140608100 1817 CpG island CpG island 16925
Tssr49552 5 140607334 to 140607352 18 + TSS region transcription start site region 49552
Lfng 5 140607341 to 140615545 8204 + protein coding gene LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Tssr49553 5 140607703 to 140607754 51 + TSS region transcription start site region 49553
Cpgi16926 5 140608705 to 140608865 160 CpG island CpG island 16926
Tssr54223 5 140609682 to 140609691 9 - TSS region transcription start site region 54223
Cpgi16927 5 140610589 to 140611173 584 CpG island CpG island 16927
Tssr49554 5 140612541 to 140612577 36 + TSS region transcription start site region 49554
Tssr49555 5 140616990 to 140617009 19 + TSS region transcription start site region 49555
Ttyh3 5 140620578 to 140649031 28453 - protein coding gene tweety family member 3
Tssr54224 5 140621293 to 140621308 15 - TSS region transcription start site region 54224
Tssr54225 5 140621398 to 140621430 32 - TSS region transcription start site region 54225
Tssr54226 5 140622829 to 140622851 22 - TSS region transcription start site region 54226
Tssr54227 5 140623064 to 140623083 19 - TSS region transcription start site region 54227
Tssr54228 5 140623237 to 140623248 11 - TSS region transcription start site region 54228
Tssr54229 5 140623316 to 140623333 17 - TSS region transcription start site region 54229
Tssr54230 5 140623409 to 140623445 36 - TSS region transcription start site region 54230
Tssr54231 5 140623451 to 140623472 21 - TSS region transcription start site region 54231
Tssr54232 5 140623475 to 140623500 25 - TSS region transcription start site region 54232
Tssr54233 5 140627264 to 140627280 16 - TSS region transcription start site region 54233
Tssr54234 5 140629464 to 140629483 19 - TSS region transcription start site region 54234
Tssr54235 5 140636018 to 140636033 15 - TSS region transcription start site region 54235
Tssr54236 5 140636060 to 140636065 5 - TSS region transcription start site region 54236
Cpgi16928 5 140648071 to 140649634 1563 CpG island CpG island 16928
Tssr54237 5 140648938 to 140648949 11 - TSS region transcription start site region 54237
Tssr54238 5 140648953 to 140648964 11 - TSS region transcription start site region 54238
Tssr54239 5 140648980 to 140649014 34 - TSS region transcription start site region 54239
Tssr54240 5 140649018 to 140649052 34 - TSS region transcription start site region 54240