Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:140327990-141545582

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nmf15 5 108614643 to 140687148 32072505 heritable phenotypic marker neuroscience mutagenesis facility, 15
Nudt1 5 140321656 to 140338137 16481 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 1
Mrm2 5 140327674 to 140331898 4224 - protein coding gene mitochondrial rRNA methyltransferase 2
Cpgi16920 5 140331514 to 140332048 534 CpG island CpG island 16920
Tssr54210 5 140331873 to 140331897 24 - TSS region transcription start site region 54210
Tssr49540 5 140331898 to 140331939 41 + TSS region transcription start site region 49540
Snx8 5 140340298 to 140389247 48949 - protein coding gene sorting nexin 8
Tssr54211 5 140340466 to 140340473 7 - TSS region transcription start site region 54211
Tssr54212 5 140360378 to 140360428 50 - TSS region transcription start site region 54212
Tssr54213 5 140382718 to 140382757 39 - TSS region transcription start site region 54213
Tssr54214 5 140386156 to 140386161 5 - TSS region transcription start site region 54214
Tssr49541 5 140388250 to 140388259 9 + TSS region transcription start site region 49541
Cpgi16921 5 140388757 to 140389656 899 CpG island CpG island 16921
Tssr54215 5 140389167 to 140389176 9 - TSS region transcription start site region 54215
Tssr54216 5 140389188 to 140389254 66 - TSS region transcription start site region 54216
Tssr54217 5 140389256 to 140389263 7 - TSS region transcription start site region 54217
Tssr49542 5 140392930 to 140392957 27 + TSS region transcription start site region 49542
Gm30550 5 140406397 to 140410357 3960 + lncRNA gene predicted gene, 30550
Cpgi16922 5 140418285 to 140420283 1998 CpG island CpG island 16922
Tssr54218 5 140418726 to 140418756 30 - TSS region transcription start site region 54218
Tssr49543 5 140419248 to 140419377 129 + TSS region transcription start site region 49543
Eif3b 5 140419328 to 140443360 24032 + protein coding gene eukaryotic translation initiation factor 3, subunit B
Tssr49544 5 140419394 to 140419405 11 + TSS region transcription start site region 49544
Tssr49545 5 140419408 to 140419443 35 + TSS region transcription start site region 49545
D5Dcr24 5 140427129 to 140427228 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 24
Mir7038 5 140427339 to 140427409 70 + miRNA gene microRNA 7038
Tssr49546 5 140436249 to 140436288 39 + TSS region transcription start site region 49546
Tssr49547 5 140437180 to 140437191 11 + TSS region transcription start site region 49547
Tssr49548 5 140437313 to 140437326 13 + TSS region transcription start site region 49548
Tssr49549 5 140441067 to 140441083 16 + TSS region transcription start site region 49549
Gm42805 5 140453418 to 140453891 473 - pseudogene predicted gene 42805
Gm4869 5 140456901 to 140495884 38983 + protein coding gene predicted gene 4869
D5Dcr25 5 140502074 to 140502169 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 25
Cpgi16923 5 140502627 to 140502850 223 CpG island CpG island 16923
Gm38728 5 140503087 to 140518270 15183 - lncRNA gene predicted gene, 38728
Cpgi16924 5 140505322 to 140506489 1167 CpG island CpG island 16924
Chst12 5 140505580 to 140525238 19658 + protein coding gene carbohydrate sulfotransferase 12
Tssr49550 5 140505620 to 140505666 46 + TSS region transcription start site region 49550
Tssr54219 5 140507597 to 140507601 4 - TSS region transcription start site region 54219
Tssr49551 5 140507734 to 140507743 9 + TSS region transcription start site region 49551
Gm42808 5 140545486 to 140546392 906 - lincRNA gene predicted gene 42808
Gm32158 5 140546435 to 140546838 403 + pseudogene predicted gene, 32158
Grifin 5 140563119 to 140565071 1952 - protein coding gene galectin-related inter-fiber protein
Tssr54220 5 140565060 to 140565072 12 - TSS region transcription start site region 54220
Gm30603 5 140589100 to 140596595 7495 - lncRNA gene predicted gene, 30603
Tssr54221 5 140596548 to 140596580 32 - TSS region transcription start site region 54221
Tssr54222 5 140596583 to 140596603 20 - TSS region transcription start site region 54222
Gm43703 5 140605789 to 140606551 762 - lincRNA gene predicted gene 43703
Cpgi16925 5 140606283 to 140608100 1817 CpG island CpG island 16925
Tssr49552 5 140607334 to 140607352 18 + TSS region transcription start site region 49552
Lfng 5 140607341 to 140615545 8204 + protein coding gene LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Tssr49553 5 140607703 to 140607754 51 + TSS region transcription start site region 49553
Cpgi16926 5 140608705 to 140608865 160 CpG island CpG island 16926
Tssr54223 5 140609682 to 140609691 9 - TSS region transcription start site region 54223
Cpgi16927 5 140610589 to 140611173 584 CpG island CpG island 16927
Tssr49554 5 140612541 to 140612577 36 + TSS region transcription start site region 49554
Tssr49555 5 140616990 to 140617009 19 + TSS region transcription start site region 49555
Ttyh3 5 140620578 to 140649031 28453 - protein coding gene tweety family member 3
Tssr54224 5 140621293 to 140621308 15 - TSS region transcription start site region 54224
Tssr54225 5 140621398 to 140621430 32 - TSS region transcription start site region 54225
Tssr54226 5 140622829 to 140622851 22 - TSS region transcription start site region 54226
Tssr54227 5 140623064 to 140623083 19 - TSS region transcription start site region 54227
Tssr54228 5 140623237 to 140623248 11 - TSS region transcription start site region 54228
Tssr54229 5 140623316 to 140623333 17 - TSS region transcription start site region 54229
Tssr54230 5 140623409 to 140623445 36 - TSS region transcription start site region 54230
Tssr54231 5 140623451 to 140623472 21 - TSS region transcription start site region 54231
Tssr54232 5 140623475 to 140623500 25 - TSS region transcription start site region 54232
Tssr54233 5 140627264 to 140627280 16 - TSS region transcription start site region 54233
Tssr54234 5 140629464 to 140629483 19 - TSS region transcription start site region 54234
Tssr54235 5 140636018 to 140636033 15 - TSS region transcription start site region 54235
Tssr54236 5 140636060 to 140636065 5 - TSS region transcription start site region 54236
Cpgi16928 5 140648071 to 140649634 1563 CpG island CpG island 16928
Tssr54237 5 140648938 to 140648949 11 - TSS region transcription start site region 54237
Tssr54238 5 140648953 to 140648964 11 - TSS region transcription start site region 54238
Tssr54239 5 140648980 to 140649014 34 - TSS region transcription start site region 54239
Tssr54240 5 140649018 to 140649052 34 - TSS region transcription start site region 54240
Iqce 5 140662553 to 140702429 39876 - protein coding gene IQ motif containing E
D5Mit292 5 140687038 to 140687148 110 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 292
Tssr54241 5 140692532 to 140692557 25 - TSS region transcription start site region 54241
Cpgi16929 5 140701566 to 140702450 884 CpG island CpG island 16929
Tssr54242 5 140702023 to 140702035 12 - TSS region transcription start site region 54242
Tssr54243 5 140702048 to 140702068 20 - TSS region transcription start site region 54243
Tssr54244 5 140702220 to 140702236 16 - TSS region transcription start site region 54244
Tssr54245 5 140702241 to 140702321 80 - TSS region transcription start site region 54245
Tssr49556 5 140702464 to 140702473 9 + TSS region transcription start site region 49556
Cpgi16930 5 140704416 to 140705499 1083 CpG island CpG island 16930
Tssr49557 5 140705006 to 140705037 31 + TSS region transcription start site region 49557
Brat1 5 140705011 to 140719379 14368 + protein coding gene BRCA1-associated ATM activator 1
Tssr49558 5 140705076 to 140705091 15 + TSS region transcription start site region 49558
Tssr49559 5 140705099 to 140705110 11 + TSS region transcription start site region 49559
Cpgi16931 5 140724038 to 140724245 207 CpG island CpG island 16931
Amz1 5 140724127 to 140753312 29185 + protein coding gene archaelysin family metallopeptidase 1
Cpgi16932 5 140735358 to 140735915 557 CpG island CpG island 16932
Tssr49560 5 140735531 to 140735548 17 + TSS region transcription start site region 49560
Tssr49561 5 140735556 to 140735567 11 + TSS region transcription start site region 49561
Gm30745 5 140748690 to 140750087 1397 - lncRNA gene predicted gene, 30745
D5Dcr26 5 140753316 to 140753418 102 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 26
Tssr54246 5 140759938 to 140759964 26 - TSS region transcription start site region 54246
Gna12 5 140759944 to 140830431 70487 - protein coding gene guanine nucleotide binding protein, alpha 12
Tssr54247 5 140760264 to 140760286 22 - TSS region transcription start site region 54247
Tssr54248 5 140760444 to 140760462 18 - TSS region transcription start site region 54248
Tssr54249 5 140760469 to 140760496 27 - TSS region transcription start site region 54249
Tssr54250 5 140760497 to 140760518 21 - TSS region transcription start site region 54250
Tssr54251 5 140760533 to 140760553 20 - TSS region transcription start site region 54251
Tssr49562 5 140767955 to 140767971 16 + TSS region transcription start site region 49562
Tssr54252 5 140773699 to 140773704 5 - TSS region transcription start site region 54252
D5Mit247 5 140800177 to 140800337 160 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 247
Tssr54253 5 140808522 to 140808527 5 - TSS region transcription start site region 54253
Tssr54254 5 140812083 to 140812086 3 - TSS region transcription start site region 54254
D5Mit327 5 140821714 to 140821812 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 327
Tssr54255 5 140826730 to 140826735 5 - TSS region transcription start site region 54255
Tssr54256 5 140826774 to 140826818 44 - TSS region transcription start site region 54256
Tssr54257 5 140826845 to 140826868 23 - TSS region transcription start site region 54257
Cpgi16933 5 140829691 to 140830910 1219 CpG island CpG island 16933
Tssr54258 5 140829759 to 140829771 12 - TSS region transcription start site region 54258
Tssr1730 5 140830154 to 140830192 38 - TSS region transcription start site region 1730
Tssr1731 5 140830265 to 140830273 8 - TSS region transcription start site region 1731
Tssr1732 5 140830311 to 140830321 10 - TSS region transcription start site region 1732
Tssr54259 5 140830337 to 140830348 11 - TSS region transcription start site region 54259
Tssr54260 5 140830363 to 140830384 21 - TSS region transcription start site region 54260
Tssr54261 5 140830403 to 140830425 22 - TSS region transcription start site region 54261
Tssr54262 5 140830430 to 140830453 23 - TSS region transcription start site region 54262
Tssr54263 5 140830455 to 140830467 12 - TSS region transcription start site region 54263
Tssr54264 5 140841969 to 140841985 16 - TSS region transcription start site region 54264
Gm30804 5 140852510 to 140880285 27775 + lncRNA gene predicted gene, 30804
Card11 5 140872990 to 141000582 127592 - protein coding gene caspase recruitment domain family, member 11
Cpgi16934 5 140873339 to 140873511 172 CpG island CpG island 16934
Cpgi16935 5 140889942 to 140890298 356 CpG island CpG island 16935
Cpgi16936 5 140906684 to 140906852 168 CpG island CpG island 16936
D5Dcr27 5 140908731 to 140908835 104 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 27
D5Dcr28 5 140920014 to 140920113 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 28
D5Dcr3 5 140922037 to 140922134 97 DNA segment DNA segment, Chr 5, Derry C. Roopenian 3
Tssr54265 5 140936140 to 140936141 1 - TSS region transcription start site region 54265
Cpgi16937 5 140944401 to 140944558 157 CpG island CpG island 16937
Tssr49563 5 140956551 to 140956572 21 + TSS region transcription start site region 49563
D5Mit99 5 140957413 to 140957611 198 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 99
D5Dcr4 5 140957425 to 140957526 101 DNA segment DNA segment, Chr 5, Derry C. Roopenian 4
Tssr54266 5 140965255 to 140965280 25 - TSS region transcription start site region 54266
Tssr54267 5 140992362 to 140992399 37 - TSS region transcription start site region 54267
D5Dcr29 5 140994339 to 140994443 104 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 29
Tssr54268 5 140995574 to 140995582 8 - TSS region transcription start site region 54268
Tssr54269 5 140995768 to 140995786 18 - TSS region transcription start site region 54269
Tssr54270 5 140995827 to 140995841 14 - TSS region transcription start site region 54270
Tssr54271 5 141000558 to 141000589 31 - TSS region transcription start site region 54271
Tssr54272 5 141000590 to 141000632 42 - TSS region transcription start site region 54272
Tssr54273 5 141000634 to 141000649 15 - TSS region transcription start site region 54273
Tssr54274 5 141000656 to 141000679 23 - TSS region transcription start site region 54274
Gm38729 5 141005001 to 141013486 8485 - lncRNA gene predicted gene, 38729
D5Dcr5 5 141022472 to 141022572 100 DNA segment DNA segment, Chr 5, Derry C. Roopenian 5
Gm44385 5 141029928 to 141030008 80 + miRNA gene predicted gene, 44385
Cpgi16938 5 141044300 to 141044484 184 CpG island CpG island 16938
Gm38730 5 141064235 to 141074685 10450 + lncRNA gene predicted gene, 38730
Gm26113 5 141080431 to 141080509 78 + miRNA gene predicted gene, 26113
Tssr49564 5 141116324 to 141116329 5 + TSS region transcription start site region 49564
Gm30866 5 141124859 to 141158981 34122 + lncRNA gene predicted gene, 30866
D5Mit380 5 141164308 to 141164427 119 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 380
D5Dcr30 5 141194598 to 141194693 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 30
D5Mit328 5 141211202 to 141211299 97 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 328
Tssr54275 5 141230296 to 141230300 4 - TSS region transcription start site region 54275
D5Dcr6 5 141238500 to 141238596 96 DNA segment DNA segment, Chr 5, Derry C. Roopenian 6
Cpgi16939 5 141240487 to 141242356 1869 CpG island CpG island 16939
Sdk1 5 141241497 to 142215586 974089 + protein coding gene sidekick cell adhesion molecule 1
Tssr49565 5 141241524 to 141241542 18 + TSS region transcription start site region 49565
Tssr49566 5 141241554 to 141241569 15 + TSS region transcription start site region 49566
Tssr49567 5 141241593 to 141241605 12 + TSS region transcription start site region 49567
Tssr49568 5 141241629 to 141241643 14 + TSS region transcription start site region 49568
Cpgi16940 5 141243428 to 141243725 297 CpG island CpG island 16940
D5Dcr31 5 141264885 to 141264983 98 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 31
Gm6433 5 141267581 to 141268455 874 - pseudogene predicted gene 6433
Tssr54276 5 141268480 to 141268481 1 - TSS region transcription start site region 54276
Gm43708 5 141297143 to 141298103 960 - unclassified gene predicted gene 43708
Gm43556 5 141307387 to 141308067 680 - unclassified gene predicted gene 43556
Gm43557 5 141315765 to 141318134 2369 - unclassified gene predicted gene 43557
Gm16035 5 141373179 to 141380926 7747 - antisense lncRNA gene predicted gene 16035
Tssr54277 5 141380928 to 141380947 19 - TSS region transcription start site region 54277
D5Dcr7 5 141457834 to 141457932 98 DNA segment DNA segment, Chr 5, Derry C. Roopenian 7