Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:139875447-140595453

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16910 5 139893964 to 139894126 162 CpG island CpG island 16910
Gm42423 5 139895809 to 139902734 6925 + lincRNA gene predicted gene 42423
Cpgi16911 5 139907130 to 139909427 2297 CpG island CpG island 16911
Elfn1 5 139907943 to 139974722 66779 + protein coding gene leucine rich repeat and fibronectin type III, extracellular 1
Tssr49534 5 139908412 to 139908424 12 + TSS region transcription start site region 49534
Cpgi16912 5 139910278 to 139910574 296 CpG island CpG island 16912
Cpgi16913 5 139911686 to 139913269 1583 CpG island CpG island 16913
Tssr49535 5 139912575 to 139912594 19 + TSS region transcription start site region 49535
D5Dcr2 5 139916996 to 139917103 107 DNA segment DNA segment, Chr 5, Derry C. Roopenian 2
Tssr1729 5 139924253 to 139924254 1 - TSS region transcription start site region 1729
Cpgi16914 5 139931981 to 139932155 174 CpG island CpG island 16914
Cpgi16915 5 139957069 to 139957243 174 CpG island CpG island 16915
Gm43704 5 139963296 to 139963791 495 - pseudogene predicted gene 43704
Cpgi16916 5 139972817 to 139973732 915 CpG island CpG island 16916
Cpgi16917 5 140002281 to 140002749 468 CpG island CpG island 16917
Mad1l1 5 140008689 to 140321552 312863 - protein coding gene MAD1 mitotic arrest deficient 1-like 1
Gm43702 5 140029631 to 140032176 2545 - unclassified gene predicted gene 43702
Tssr49536 5 140062461 to 140062468 7 + TSS region transcription start site region 49536
Gm16122 5 140074105 to 140085512 11407 + antisense lncRNA gene predicted gene 16122
Gm30492 5 140094719 to 140100186 5467 + lncRNA gene predicted gene, 30492
Gm16121 5 140101199 to 140107591 6392 + antisense lncRNA gene predicted gene 16121
Tssr54190 5 140105824 to 140105852 28 - TSS region transcription start site region 54190
Tssr54191 5 140118040 to 140118056 16 - TSS region transcription start site region 54191
Tssr54192 5 140118060 to 140118069 9 - TSS region transcription start site region 54192
Gm43195 5 140149156 to 140151487 2331 - unclassified gene predicted gene 43195
Tssr54193 5 140174801 to 140174813 12 - TSS region transcription start site region 54193
Tssr54194 5 140201155 to 140201175 20 - TSS region transcription start site region 54194
Tssr54195 5 140206046 to 140206057 11 - TSS region transcription start site region 54195
Gm16120 5 140207385 to 140210751 3366 + antisense lncRNA gene predicted gene 16120
Tssr54196 5 140208728 to 140208747 19 - TSS region transcription start site region 54196
Cpgi16918 5 140208734 to 140209054 320 CpG island CpG island 16918
Tssr49537 5 140208831 to 140208850 19 + TSS region transcription start site region 49537
Tssr54197 5 140215428 to 140215437 9 - TSS region transcription start site region 54197
Tssr54198 5 140235447 to 140235453 6 - TSS region transcription start site region 54198
Tssr54199 5 140246836 to 140246838 2 - TSS region transcription start site region 54199
D5Dcr21 5 140259798 to 140259895 97 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 21
Tssr54200 5 140261517 to 140261547 30 - TSS region transcription start site region 54200
Tssr54201 5 140261561 to 140261570 9 - TSS region transcription start site region 54201
Tssr54202 5 140261571 to 140261587 16 - TSS region transcription start site region 54202
Tssr54203 5 140261692 to 140261716 24 - TSS region transcription start site region 54203
Tssr54204 5 140261778 to 140261789 11 - TSS region transcription start site region 54204
Tssr54205 5 140262525 to 140262534 9 - TSS region transcription start site region 54205
Tssr54206 5 140262555 to 140262579 24 - TSS region transcription start site region 54206
Tssr54207 5 140262596 to 140262601 5 - TSS region transcription start site region 54207
Tssr54208 5 140264323 to 140264328 5 - TSS region transcription start site region 54208
Tssr49538 5 140264377 to 140264398 21 + TSS region transcription start site region 49538
D5Dcr22 5 140288332 to 140288427 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 22
D5Dcr23 5 140305161 to 140305258 97 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 23
Cpgi16919 5 140321102 to 140321783 681 CpG island CpG island 16919
Tssr54209 5 140321524 to 140321585 61 - TSS region transcription start site region 54209
Tssr49539 5 140321614 to 140321671 57 + TSS region transcription start site region 49539
Gm43338 5 140321622 to 140323844 2222 - unclassified gene predicted gene 43338
Nudt1 5 140321656 to 140338137 16481 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 1
5730453C05Rik 5 140324738 to 140326055 1317 unclassified gene RIKEN cDNA 5730453C05 gene
Mrm2 5 140327674 to 140331898 4224 - protein coding gene mitochondrial rRNA methyltransferase 2
Cpgi16920 5 140331514 to 140332048 534 CpG island CpG island 16920
Tssr54210 5 140331873 to 140331897 24 - TSS region transcription start site region 54210
Tssr49540 5 140331898 to 140331939 41 + TSS region transcription start site region 49540
Snx8 5 140340298 to 140389247 48949 - protein coding gene sorting nexin 8
Tssr54211 5 140340466 to 140340473 7 - TSS region transcription start site region 54211
Tssr54212 5 140360378 to 140360428 50 - TSS region transcription start site region 54212
Tssr54213 5 140382718 to 140382757 39 - TSS region transcription start site region 54213
Tssr54214 5 140386156 to 140386161 5 - TSS region transcription start site region 54214
Tssr49541 5 140388250 to 140388259 9 + TSS region transcription start site region 49541
Cpgi16921 5 140388757 to 140389656 899 CpG island CpG island 16921
Tssr54215 5 140389167 to 140389176 9 - TSS region transcription start site region 54215
Tssr54216 5 140389188 to 140389254 66 - TSS region transcription start site region 54216
Tssr54217 5 140389256 to 140389263 7 - TSS region transcription start site region 54217
Tssr49542 5 140392930 to 140392957 27 + TSS region transcription start site region 49542
Gm30550 5 140406397 to 140410357 3960 + lncRNA gene predicted gene, 30550
Cpgi16922 5 140418285 to 140420283 1998 CpG island CpG island 16922
Tssr54218 5 140418726 to 140418756 30 - TSS region transcription start site region 54218
Tssr49543 5 140419248 to 140419377 129 + TSS region transcription start site region 49543
Eif3b 5 140419328 to 140443360 24032 + protein coding gene eukaryotic translation initiation factor 3, subunit B
Tssr49544 5 140419394 to 140419405 11 + TSS region transcription start site region 49544
Tssr49545 5 140419408 to 140419443 35 + TSS region transcription start site region 49545
D5Dcr24 5 140427129 to 140427228 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 24
Mir7038 5 140427339 to 140427409 70 + miRNA gene microRNA 7038
Tssr49546 5 140436249 to 140436288 39 + TSS region transcription start site region 49546
Tssr49547 5 140437180 to 140437191 11 + TSS region transcription start site region 49547
Tssr49548 5 140437313 to 140437326 13 + TSS region transcription start site region 49548
Tssr49549 5 140441067 to 140441083 16 + TSS region transcription start site region 49549
Gm42805 5 140453418 to 140453891 473 - pseudogene predicted gene 42805
Gm4869 5 140456901 to 140495884 38983 + protein coding gene predicted gene 4869
D5Dcr25 5 140502074 to 140502169 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 25
Cpgi16923 5 140502627 to 140502850 223 CpG island CpG island 16923
Gm38728 5 140503087 to 140518270 15183 - lncRNA gene predicted gene, 38728
Cpgi16924 5 140505322 to 140506489 1167 CpG island CpG island 16924
Chst12 5 140505580 to 140525238 19658 + protein coding gene carbohydrate sulfotransferase 12
Tssr49550 5 140505620 to 140505666 46 + TSS region transcription start site region 49550
Tssr54219 5 140507597 to 140507601 4 - TSS region transcription start site region 54219
Tssr49551 5 140507734 to 140507743 9 + TSS region transcription start site region 49551
Gm42808 5 140545486 to 140546392 906 - lincRNA gene predicted gene 42808
Gm32158 5 140546435 to 140546838 403 + pseudogene predicted gene, 32158
Grifin 5 140563119 to 140565071 1952 - protein coding gene galectin-related inter-fiber protein
Tssr54220 5 140565060 to 140565072 12 - TSS region transcription start site region 54220
Gm30603 5 140589100 to 140596595 7495 - lncRNA gene predicted gene, 30603