Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:139782281-140222749

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16906 5 139791071 to 139792271 1200 CpG island CpG island 16906
Tssr49526 5 139791508 to 139791517 9 + TSS region transcription start site region 49526
Tssr49527 5 139791522 to 139791539 17 + TSS region transcription start site region 49527
Mafk 5 139791536 to 139802653 11117 + protein coding gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)
Tssr49528 5 139791556 to 139791601 45 + TSS region transcription start site region 49528
Tssr49529 5 139793994 to 139794005 11 + TSS region transcription start site region 49529
D5Dcr1 5 139794767 to 139794865 98 DNA segment DNA segment, Chr 5, Derry C. Roopenian 1
Tssr49530 5 139801012 to 139801017 5 + TSS region transcription start site region 49530
Tmem184a 5 139804952 to 139819971 15019 - protein coding gene transmembrane protein 184a
Cpgi16907 5 139807863 to 139808688 825 CpG island CpG island 16907
Gm26938 5 139807978 to 139826407 18429 - protein coding gene predicted gene, 26938
Tssr54179 5 139808501 to 139808525 24 - TSS region transcription start site region 54179
Tssr54180 5 139812995 to 139813006 11 - TSS region transcription start site region 54180
Cpgi16908 5 139813008 to 139813195 187 CpG island CpG island 16908
Tssr54181 5 139813208 to 139813220 12 - TSS region transcription start site region 54181
Tssr54182 5 139813237 to 139813250 13 - TSS region transcription start site region 54182
Tssr54183 5 139813994 to 139814014 20 - TSS region transcription start site region 54183
Tssr54184 5 139814025 to 139814062 37 - TSS region transcription start site region 54184
Tssr54185 5 139814198 to 139814229 31 - TSS region transcription start site region 54185
Tssr54186 5 139814231 to 139814279 48 - TSS region transcription start site region 54186
Tssr54187 5 139819906 to 139819932 26 - TSS region transcription start site region 54187
Tssr54188 5 139819933 to 139819973 40 - TSS region transcription start site region 54188
Tssr49531 5 139820091 to 139820102 11 + TSS region transcription start site region 49531
Gm46927 5 139821058 to 139833215 12157 + lncRNA gene predicted gene, 46927
Tssr49532 5 139822310 to 139822345 35 + TSS region transcription start site region 49532
Tssr49533 5 139822346 to 139822377 31 + TSS region transcription start site region 49533
Psmg3 5 139823592 to 139826885 3293 - protein coding gene proteasome (prosome, macropain) assembly chaperone 3
Cpgi16909 5 139826278 to 139827064 786 CpG island CpG island 16909
Tssr54189 5 139826837 to 139826891 54 - TSS region transcription start site region 54189
Gm38727 5 139836527 to 139838336 1809 + lncRNA gene predicted gene, 38727
Gm24146 5 139844930 to 139845250 320 + unclassified non-coding RNA gene predicted gene, 24146
Cpgi16910 5 139893964 to 139894126 162 CpG island CpG island 16910
Gm42423 5 139895809 to 139902734 6925 + lincRNA gene predicted gene 42423
Cpgi16911 5 139907130 to 139909427 2297 CpG island CpG island 16911
Elfn1 5 139907943 to 139974722 66779 + protein coding gene leucine rich repeat and fibronectin type III, extracellular 1
Tssr49534 5 139908412 to 139908424 12 + TSS region transcription start site region 49534
Cpgi16912 5 139910278 to 139910574 296 CpG island CpG island 16912
Cpgi16913 5 139911686 to 139913269 1583 CpG island CpG island 16913
Tssr49535 5 139912575 to 139912594 19 + TSS region transcription start site region 49535
D5Dcr2 5 139916996 to 139917103 107 DNA segment DNA segment, Chr 5, Derry C. Roopenian 2
Tssr1729 5 139924253 to 139924254 1 - TSS region transcription start site region 1729
Cpgi16914 5 139931981 to 139932155 174 CpG island CpG island 16914
Cpgi16915 5 139957069 to 139957243 174 CpG island CpG island 16915
Gm43704 5 139963296 to 139963791 495 - pseudogene predicted gene 43704
Cpgi16916 5 139972817 to 139973732 915 CpG island CpG island 16916
Cpgi16917 5 140002281 to 140002749 468 CpG island CpG island 16917
Mad1l1 5 140008689 to 140321552 312863 - protein coding gene MAD1 mitotic arrest deficient 1-like 1
Gm43702 5 140029631 to 140032176 2545 - unclassified gene predicted gene 43702
Tssr49536 5 140062461 to 140062468 7 + TSS region transcription start site region 49536
Gm16122 5 140074105 to 140085512 11407 + antisense lncRNA gene predicted gene 16122
Gm30492 5 140094719 to 140100186 5467 + lncRNA gene predicted gene, 30492
Gm16121 5 140101199 to 140107591 6392 + antisense lncRNA gene predicted gene 16121
Tssr54190 5 140105824 to 140105852 28 - TSS region transcription start site region 54190
Tssr54191 5 140118040 to 140118056 16 - TSS region transcription start site region 54191
Tssr54192 5 140118060 to 140118069 9 - TSS region transcription start site region 54192
Gm43195 5 140149156 to 140151487 2331 - unclassified gene predicted gene 43195
Tssr54193 5 140174801 to 140174813 12 - TSS region transcription start site region 54193
Tssr54194 5 140201155 to 140201175 20 - TSS region transcription start site region 54194
Tssr54195 5 140206046 to 140206057 11 - TSS region transcription start site region 54195
Gm16120 5 140207385 to 140210751 3366 + antisense lncRNA gene predicted gene 16120
Tssr54196 5 140208728 to 140208747 19 - TSS region transcription start site region 54196
Cpgi16918 5 140208734 to 140209054 320 CpG island CpG island 16918
Tssr49537 5 140208831 to 140208850 19 + TSS region transcription start site region 49537
Tssr54197 5 140215428 to 140215437 9 - TSS region transcription start site region 54197