Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:139141696-140301336

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228 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkar1b 5 139017306 to 139150001 132695 - protein coding gene protein kinase, cAMP dependent regulatory, type I beta
Gm15672 5 139147576 to 139150693 3117 - unclassified non-coding RNA gene predicted gene 15672
Cpgi16874 5 139149524 to 139151120 1596 CpG island CpG island 16874
Tssr49484 5 139150139 to 139150146 7 + TSS region transcription start site region 49484
Tssr49485 5 139150200 to 139150209 9 + TSS region transcription start site region 49485
Tssr49486 5 139150211 to 139150249 38 + TSS region transcription start site region 49486
Dnaaf5 5 139150223 to 139186505 36282 + protein coding gene dynein, axonemal assembly factor 5
Tssr54135 5 139150659 to 139150723 64 - TSS region transcription start site region 54135
Tssr49487 5 139150824 to 139150833 9 + TSS region transcription start site region 49487
Tssr49488 5 139161801 to 139161851 50 + TSS region transcription start site region 49488
Tssr49489 5 139161879 to 139161888 9 + TSS region transcription start site region 49489
Tssr49490 5 139167077 to 139167083 6 + TSS region transcription start site region 49490
D5Dcr16 5 139184955 to 139185067 112 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 16
Cpgi16875 5 139200155 to 139201409 1254 CpG island CpG island 16875
Tssr49491 5 139200631 to 139200678 47 + TSS region transcription start site region 49491
Sun1 5 139200637 to 139249840 49203 + protein coding gene Sad1 and UNC84 domain containing 1
Tssr49492 5 139211934 to 139211948 14 + TSS region transcription start site region 49492
4930520M14Rik 5 139215469 to 139216356 887 - antisense lncRNA gene RIKEN cDNA 4930520M14 gene
Tssr54136 5 139216314 to 139216358 44 - TSS region transcription start site region 54136
Tssr49493 5 139217754 to 139217758 4 + TSS region transcription start site region 49493
Cpgi16876 5 139251808 to 139253178 1370 CpG island CpG island 16876
Tssr49494 5 139252314 to 139252329 15 + TSS region transcription start site region 49494
Get4 5 139252324 to 139270051 17727 + protein coding gene golgi to ER traffic protein 4
Tssr49495 5 139252343 to 139252455 112 + TSS region transcription start site region 49495
Tssr49496 5 139252722 to 139252787 65 + TSS region transcription start site region 49496
Tssr49497 5 139253489 to 139253519 30 + TSS region transcription start site region 49497
Tssr49498 5 139256632 to 139256636 4 + TSS region transcription start site region 49498
Adap1 5 139271876 to 139325464 53588 - protein coding gene ArfGAP with dual PH domains 1
Cpgi16877 5 139282240 to 139282488 248 CpG island CpG island 16877
Tssr54137 5 139306261 to 139306305 44 - TSS region transcription start site region 54137
Gm27316 5 139312424 to 139312700 276 + unclassified non-coding RNA gene predicted gene, 27316
Tssr54138 5 139316326 to 139316344 18 - TSS region transcription start site region 54138
Cpgi16878 5 139324578 to 139326134 1556 CpG island CpG island 16878
Tssr54139 5 139325373 to 139325405 32 - TSS region transcription start site region 54139
Tssr54140 5 139325443 to 139325488 45 - TSS region transcription start site region 54140
Tssr54141 5 139325490 to 139325568 78 - TSS region transcription start site region 54141
Tssr54142 5 139325616 to 139325627 11 - TSS region transcription start site region 54142
Tssr54143 5 139325697 to 139325752 55 - TSS region transcription start site region 54143
Tssr54144 5 139325757 to 139325768 11 - TSS region transcription start site region 54144
Tssr54145 5 139325771 to 139325772 1 - TSS region transcription start site region 54145
Cox19 5 139337822 to 139345166 7344 - protein coding gene cytochrome c oxidase assembly protein 19
Cpgi16879 5 139344930 to 139345404 474 CpG island CpG island 16879
Tssr54146 5 139345097 to 139345108 11 - TSS region transcription start site region 54146
Tssr54147 5 139345112 to 139345148 36 - TSS region transcription start site region 54147
Tssr54148 5 139345149 to 139345216 67 - TSS region transcription start site region 54148
Tssr49499 5 139352607 to 139352623 16 + TSS region transcription start site region 49499
Cyp2w1 5 139352617 to 139357033 4416 + protein coding gene cytochrome P450, family 2, subfamily w, polypeptide 1
Tssr49500 5 139354209 to 139354222 13 + TSS region transcription start site region 49500
Tssr49501 5 139354241 to 139354260 19 + TSS region transcription start site region 49501
3110082I17Rik 5 139359739 to 139460527 100788 - protein coding gene RIKEN cDNA 3110082I17 gene
Tssr49502 5 139364964 to 139364996 32 + TSS region transcription start site region 49502
Mir339 5 139369650 to 139369745 95 - miRNA gene microRNA 339
Cpgi16880 5 139371854 to 139372493 639 CpG island CpG island 16880
Tssr54149 5 139372177 to 139372201 24 - TSS region transcription start site region 54149
Tssr54150 5 139372213 to 139372242 29 - TSS region transcription start site region 54150
Tssr1727 5 139372243 to 139372256 13 - TSS region transcription start site region 1727
Tssr49503 5 139377688 to 139377710 22 + TSS region transcription start site region 49503
Gpr146 5 139377697 to 139396415 18718 + protein coding gene G protein-coupled receptor 146
Tssr49504 5 139377716 to 139377745 29 + TSS region transcription start site region 49504
Cpgi16881 5 139380119 to 139381188 1069 CpG island CpG island 16881
Tssr49505 5 139380632 to 139380707 75 + TSS region transcription start site region 49505
Tssr54151 5 139382276 to 139382326 50 - TSS region transcription start site region 54151
Tssr54152 5 139382894 to 139382908 14 - TSS region transcription start site region 54152
Tssr54153 5 139382920 to 139382949 29 - TSS region transcription start site region 54153
Tssr49506 5 139389894 to 139389920 26 + TSS region transcription start site region 49506
Tssr49507 5 139405278 to 139405297 19 + TSS region transcription start site region 49507
C130050O18Rik 5 139405280 to 139415623 10343 + protein coding gene RIKEN cDNA C130050O18 gene
Tssr49508 5 139405311 to 139405320 9 + TSS region transcription start site region 49508
Tssr54154 5 139406111 to 139406138 27 - TSS region transcription start site region 54154
Tssr49509 5 139406401 to 139406435 34 + TSS region transcription start site region 49509
Tssr49510 5 139406446 to 139406466 20 + TSS region transcription start site region 49510
Tssr49511 5 139406677 to 139406689 12 + TSS region transcription start site region 49511
Tssr54155 5 139408440 to 139408455 15 - TSS region transcription start site region 54155
Tssr54156 5 139408493 to 139408506 13 - TSS region transcription start site region 54156
Tssr54157 5 139408511 to 139408520 9 - TSS region transcription start site region 54157
Gper1 5 139423151 to 139427800 4649 + protein coding gene G protein-coupled estrogen receptor 1
Cpgi16882 5 139423168 to 139423449 281 CpG island CpG island 16882
Tssr49512 5 139423172 to 139423186 14 + TSS region transcription start site region 49512
Tssr49513 5 139423191 to 139423202 11 + TSS region transcription start site region 49513
Gm26285 5 139443599 to 139443705 106 + snRNA gene predicted gene, 26285
D5Dcr17 5 139445283 to 139445378 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 17
Cpgi16883 5 139460167 to 139460841 674 CpG island CpG island 16883
Tssr54158 5 139460490 to 139460500 10 - TSS region transcription start site region 54158
Tssr54159 5 139460501 to 139460549 48 - TSS region transcription start site region 54159
Tssr54160 5 139460604 to 139460639 35 - TSS region transcription start site region 54160
Zfand2a 5 139471216 to 139484491 13275 - protein coding gene zinc finger, AN1-type domain 2A
Tssr49514 5 139473016 to 139473059 43 + TSS region transcription start site region 49514
Tssr54161 5 139473138 to 139473182 44 - TSS region transcription start site region 54161
Tssr54162 5 139473258 to 139473269 11 - TSS region transcription start site region 54162
Tssr54163 5 139478292 to 139478309 17 - TSS region transcription start site region 54163
Tssr54164 5 139478555 to 139478571 16 - TSS region transcription start site region 54164
Tssr54165 5 139478934 to 139478948 14 - TSS region transcription start site region 54165
Tssr54166 5 139478978 to 139478984 6 - TSS region transcription start site region 54166
Tssr49515 5 139479403 to 139479423 20 + TSS region transcription start site region 49515
Cpgi16884 5 139484077 to 139484777 700 CpG island CpG island 16884
Tssr54167 5 139484391 to 139484408 17 - TSS region transcription start site region 54167
Tssr54168 5 139484420 to 139484473 53 - TSS region transcription start site region 54168
Tssr54169 5 139484475 to 139484496 21 - TSS region transcription start site region 54169
Tssr49516 5 139484681 to 139484721 40 + TSS region transcription start site region 49516
4930500L23Rik 5 139523751 to 139541339 17588 + lincRNA gene RIKEN cDNA 4930500L23 gene
D5Mit284 5 139524691 to 139524893 202 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 284
Cpgi16885 5 139535369 to 139535830 461 CpG island CpG island 16885
Cpgi16886 5 139540259 to 139541752 1493 CpG island CpG island 16886
Cpgi16887 5 139543327 to 139545021 1694 CpG island CpG island 16887
Tssr49517 5 139543862 to 139543871 9 + TSS region transcription start site region 49517
Tssr49518 5 139543889 to 139543904 15 + TSS region transcription start site region 49518
Uncx 5 139543898 to 139548179 4281 + protein coding gene UNC homeobox
Tssr49519 5 139543911 to 139543932 21 + TSS region transcription start site region 49519
Cpgi16888 5 139546302 to 139547958 1656 CpG island CpG island 16888
Tssr1728 5 139547862 to 139547873 11 + TSS region transcription start site region 1728
Tssr49520 5 139547944 to 139547955 11 + TSS region transcription start site region 49520
Tssr49521 5 139547970 to 139547982 12 + TSS region transcription start site region 49521
Tssr49522 5 139547995 to 139548004 9 + TSS region transcription start site region 49522
Cpgi16889 5 139548345 to 139548948 603 CpG island CpG island 16889
Cpgi16890 5 139551423 to 139551662 239 CpG island CpG island 16890
Cpgi16891 5 139552705 to 139552881 176 CpG island CpG island 16891
Cpgi16892 5 139553164 to 139553624 460 CpG island CpG island 16892
Cpgi16893 5 139557552 to 139557964 412 CpG island CpG island 16893
Cpgi16894 5 139558553 to 139558729 176 CpG island CpG island 16894
Cpgi16895 5 139585311 to 139585832 521 CpG island CpG island 16895
Cpgi16896 5 139599839 to 139600477 638 CpG island CpG island 16896
Cpgi16897 5 139610909 to 139611153 244 CpG island CpG island 16897
Cpgi16898 5 139619279 to 139620067 788 CpG island CpG island 16898
Cpgi16899 5 139659339 to 139659647 308 CpG island CpG island 16899
Gm46926 5 139660862 to 139669212 8350 - lncRNA gene predicted gene, 46926
Cpgi16900 5 139668487 to 139668912 425 CpG island CpG island 16900
Cpgi16901 5 139687820 to 139687976 156 CpG island CpG island 16901
Gm42424 5 139701647 to 139702022 375 + pseudogene predicted gene 42424
D5Dcr18 5 139702313 to 139702413 100 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 18
Micall2 5 139706696 to 139736336 29640 - protein coding gene MICAL-like 2
Tssr54170 5 139716416 to 139716427 11 - TSS region transcription start site region 54170
Tssr54171 5 139716495 to 139716524 29 - TSS region transcription start site region 54171
Tssr49523 5 139722931 to 139722941 10 + TSS region transcription start site region 49523
Tssr49524 5 139723290 to 139723304 14 + TSS region transcription start site region 49524
D5Dcr19 5 139726842 to 139726939 97 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 19
Cpgi16902 5 139732755 to 139732911 156 CpG island CpG island 16902
Cpgi16903 5 139735886 to 139736557 671 CpG island CpG island 16903
Tssr54172 5 139736266 to 139736287 21 - TSS region transcription start site region 54172
Tssr54173 5 139736291 to 139736332 41 - TSS region transcription start site region 54173
Tssr49525 5 139736797 to 139736803 6 + TSS region transcription start site region 49525
Ints1 5 139751282 to 139775674 24392 - protein coding gene integrator complex subunit 1
Cpgi16904 5 139754935 to 139755341 406 CpG island CpG island 16904
D5Dcr20 5 139766932 to 139767030 98 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 20
Mir7037 5 139767879 to 139767943 64 - miRNA gene microRNA 7037
Tssr54174 5 139771583 to 139771600 17 - TSS region transcription start site region 54174
Tssr54175 5 139771607 to 139771614 7 - TSS region transcription start site region 54175
Tssr54176 5 139774385 to 139774409 24 - TSS region transcription start site region 54176
Tssr54177 5 139774428 to 139774439 11 - TSS region transcription start site region 54177
Cpgi16905 5 139775131 to 139775857 726 CpG island CpG island 16905
Tssr54178 5 139775631 to 139775681 50 - TSS region transcription start site region 54178
Cpgi16906 5 139791071 to 139792271 1200 CpG island CpG island 16906
Tssr49526 5 139791508 to 139791517 9 + TSS region transcription start site region 49526
Tssr49527 5 139791522 to 139791539 17 + TSS region transcription start site region 49527
Mafk 5 139791536 to 139802653 11117 + protein coding gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)
Tssr49528 5 139791556 to 139791601 45 + TSS region transcription start site region 49528
Tssr49529 5 139793994 to 139794005 11 + TSS region transcription start site region 49529
D5Dcr1 5 139794767 to 139794865 98 DNA segment DNA segment, Chr 5, Derry C. Roopenian 1
Tssr49530 5 139801012 to 139801017 5 + TSS region transcription start site region 49530
Tmem184a 5 139804952 to 139819971 15019 - protein coding gene transmembrane protein 184a
Cpgi16907 5 139807863 to 139808688 825 CpG island CpG island 16907
Gm26938 5 139807978 to 139826407 18429 - protein coding gene predicted gene, 26938
Tssr54179 5 139808501 to 139808525 24 - TSS region transcription start site region 54179
Tssr54180 5 139812995 to 139813006 11 - TSS region transcription start site region 54180
Cpgi16908 5 139813008 to 139813195 187 CpG island CpG island 16908
Tssr54181 5 139813208 to 139813220 12 - TSS region transcription start site region 54181
Tssr54182 5 139813237 to 139813250 13 - TSS region transcription start site region 54182
Tssr54183 5 139813994 to 139814014 20 - TSS region transcription start site region 54183
Tssr54184 5 139814025 to 139814062 37 - TSS region transcription start site region 54184
Tssr54185 5 139814198 to 139814229 31 - TSS region transcription start site region 54185
Tssr54186 5 139814231 to 139814279 48 - TSS region transcription start site region 54186
Tssr54187 5 139819906 to 139819932 26 - TSS region transcription start site region 54187
Tssr54188 5 139819933 to 139819973 40 - TSS region transcription start site region 54188
Tssr49531 5 139820091 to 139820102 11 + TSS region transcription start site region 49531
Gm46927 5 139821058 to 139833215 12157 + lncRNA gene predicted gene, 46927
Tssr49532 5 139822310 to 139822345 35 + TSS region transcription start site region 49532
Tssr49533 5 139822346 to 139822377 31 + TSS region transcription start site region 49533
Psmg3 5 139823592 to 139826885 3293 - protein coding gene proteasome (prosome, macropain) assembly chaperone 3
Cpgi16909 5 139826278 to 139827064 786 CpG island CpG island 16909
Tssr54189 5 139826837 to 139826891 54 - TSS region transcription start site region 54189
Gm38727 5 139836527 to 139838336 1809 + lncRNA gene predicted gene, 38727
Gm24146 5 139844930 to 139845250 320 + unclassified non-coding RNA gene predicted gene, 24146
Cpgi16910 5 139893964 to 139894126 162 CpG island CpG island 16910
Gm42423 5 139895809 to 139902734 6925 + lincRNA gene predicted gene 42423
Cpgi16911 5 139907130 to 139909427 2297 CpG island CpG island 16911
Elfn1 5 139907943 to 139974722 66779 + protein coding gene leucine rich repeat and fibronectin type III, extracellular 1
Tssr49534 5 139908412 to 139908424 12 + TSS region transcription start site region 49534
Cpgi16912 5 139910278 to 139910574 296 CpG island CpG island 16912
Cpgi16913 5 139911686 to 139913269 1583 CpG island CpG island 16913
Tssr49535 5 139912575 to 139912594 19 + TSS region transcription start site region 49535
D5Dcr2 5 139916996 to 139917103 107 DNA segment DNA segment, Chr 5, Derry C. Roopenian 2
Tssr1729 5 139924253 to 139924254 1 - TSS region transcription start site region 1729
Cpgi16914 5 139931981 to 139932155 174 CpG island CpG island 16914
Cpgi16915 5 139957069 to 139957243 174 CpG island CpG island 16915
Gm43704 5 139963296 to 139963791 495 - pseudogene predicted gene 43704
Cpgi16916 5 139972817 to 139973732 915 CpG island CpG island 16916
Cpgi16917 5 140002281 to 140002749 468 CpG island CpG island 16917
Mad1l1 5 140008689 to 140321552 312863 - protein coding gene MAD1 mitotic arrest deficient 1-like 1
Gm43702 5 140029631 to 140032176 2545 - unclassified gene predicted gene 43702
Tssr49536 5 140062461 to 140062468 7 + TSS region transcription start site region 49536
Gm16122 5 140074105 to 140085512 11407 + antisense lncRNA gene predicted gene 16122