Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:138961261-139651305

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160 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hypch 5 109090758 to 139133150 30042392 QTL hypercholesterolemia
Pdgfa 5 138976381 to 138997686 21305 - protein coding gene platelet derived growth factor, alpha
Tssr54109 5 138976512 to 138976516 4 - TSS region transcription start site region 54109
Tssr49481 5 138976974 to 138977016 42 + TSS region transcription start site region 49481
Tssr54110 5 138977003 to 138977055 52 - TSS region transcription start site region 54110
Tssr54111 5 138977076 to 138977092 16 - TSS region transcription start site region 54111
Tssr54112 5 138977095 to 138977106 11 - TSS region transcription start site region 54112
Tssr54113 5 138977136 to 138977152 16 - TSS region transcription start site region 54113
Tssr54114 5 138977185 to 138977196 11 - TSS region transcription start site region 54114
Cpgi16871 5 138992864 to 138996563 3699 CpG island CpG island 16871
Tssr54115 5 138993093 to 138993113 20 - TSS region transcription start site region 54115
Tssr54116 5 138994112 to 138994124 12 - TSS region transcription start site region 54116
Tssr54117 5 138994935 to 138994983 48 - TSS region transcription start site region 54117
Tssr49482 5 138995038 to 138995066 28 + TSS region transcription start site region 49482
6330403L08Rik 5 138995056 to 139000577 5521 + antisense lncRNA gene RIKEN cDNA 6330403L08 gene
Tssr54118 5 138995326 to 138995364 38 - TSS region transcription start site region 54118
Tssr54119 5 138995624 to 138995640 16 - TSS region transcription start site region 54119
Tssr54120 5 138996006 to 138996025 19 - TSS region transcription start site region 54120
Tssr54121 5 138996057 to 138996068 11 - TSS region transcription start site region 54121
Tssr54122 5 138996091 to 138996112 21 - TSS region transcription start site region 54122
Tssr49483 5 138996225 to 138996263 38 + TSS region transcription start site region 49483
Cpgi16872 5 138997101 to 138998571 1470 CpG island CpG island 16872
Tssr54123 5 138997610 to 138997627 17 - TSS region transcription start site region 54123
Tssr54124 5 138997635 to 138997646 11 - TSS region transcription start site region 54124
Prkar1b 5 139017306 to 139150001 132695 - protein coding gene protein kinase, cAMP dependent regulatory, type I beta
Tssr54125 5 139018400 to 139018411 11 - TSS region transcription start site region 54125
Tssr54126 5 139024587 to 139024608 21 - TSS region transcription start site region 54126
Tssr54127 5 139039153 to 139039154 1 - TSS region transcription start site region 54127
Cpgi16873 5 139129173 to 139130246 1073 CpG island CpG island 16873
Tssr54128 5 139129662 to 139129752 90 - TSS region transcription start site region 54128
Tssr54129 5 139129873 to 139129880 7 - TSS region transcription start site region 54129
Tssr54130 5 139130002 to 139130011 9 - TSS region transcription start site region 54130
Tssr54131 5 139130016 to 139130042 26 - TSS region transcription start site region 54131
Tssr54132 5 139130044 to 139130063 19 - TSS region transcription start site region 54132
Tssr54133 5 139130076 to 139130079 3 - TSS region transcription start site region 54133
Tssr54134 5 139130170 to 139130181 11 - TSS region transcription start site region 54134
D5Mit374 5 139133034 to 139133150 116 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 374
9330169B04Rik 5 139135827 to 139139417 3590 unclassified gene RIKEN cDNA 9330169B04 gene
Gm15672 5 139147576 to 139150693 3117 - unclassified non-coding RNA gene predicted gene 15672
Cpgi16874 5 139149524 to 139151120 1596 CpG island CpG island 16874
Tssr49484 5 139150139 to 139150146 7 + TSS region transcription start site region 49484
Tssr49485 5 139150200 to 139150209 9 + TSS region transcription start site region 49485
Tssr49486 5 139150211 to 139150249 38 + TSS region transcription start site region 49486
Dnaaf5 5 139150223 to 139186505 36282 + protein coding gene dynein, axonemal assembly factor 5
Tssr54135 5 139150659 to 139150723 64 - TSS region transcription start site region 54135
Tssr49487 5 139150824 to 139150833 9 + TSS region transcription start site region 49487
Tssr49488 5 139161801 to 139161851 50 + TSS region transcription start site region 49488
Tssr49489 5 139161879 to 139161888 9 + TSS region transcription start site region 49489
Tssr49490 5 139167077 to 139167083 6 + TSS region transcription start site region 49490
D5Dcr16 5 139184955 to 139185067 112 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 16
Cpgi16875 5 139200155 to 139201409 1254 CpG island CpG island 16875
Tssr49491 5 139200631 to 139200678 47 + TSS region transcription start site region 49491
Sun1 5 139200637 to 139249840 49203 + protein coding gene Sad1 and UNC84 domain containing 1
Tssr49492 5 139211934 to 139211948 14 + TSS region transcription start site region 49492
4930520M14Rik 5 139215469 to 139216356 887 - antisense lncRNA gene RIKEN cDNA 4930520M14 gene
Tssr54136 5 139216314 to 139216358 44 - TSS region transcription start site region 54136
Tssr49493 5 139217754 to 139217758 4 + TSS region transcription start site region 49493
Cpgi16876 5 139251808 to 139253178 1370 CpG island CpG island 16876
Tssr49494 5 139252314 to 139252329 15 + TSS region transcription start site region 49494
Get4 5 139252324 to 139270051 17727 + protein coding gene golgi to ER traffic protein 4
Tssr49495 5 139252343 to 139252455 112 + TSS region transcription start site region 49495
Tssr49496 5 139252722 to 139252787 65 + TSS region transcription start site region 49496
Tssr49497 5 139253489 to 139253519 30 + TSS region transcription start site region 49497
Tssr49498 5 139256632 to 139256636 4 + TSS region transcription start site region 49498
Adap1 5 139271876 to 139325464 53588 - protein coding gene ArfGAP with dual PH domains 1
Cpgi16877 5 139282240 to 139282488 248 CpG island CpG island 16877
Tssr54137 5 139306261 to 139306305 44 - TSS region transcription start site region 54137
Gm27316 5 139312424 to 139312700 276 + unclassified non-coding RNA gene predicted gene, 27316
Tssr54138 5 139316326 to 139316344 18 - TSS region transcription start site region 54138
Cpgi16878 5 139324578 to 139326134 1556 CpG island CpG island 16878
Tssr54139 5 139325373 to 139325405 32 - TSS region transcription start site region 54139
Tssr54140 5 139325443 to 139325488 45 - TSS region transcription start site region 54140
Tssr54141 5 139325490 to 139325568 78 - TSS region transcription start site region 54141
Tssr54142 5 139325616 to 139325627 11 - TSS region transcription start site region 54142
Tssr54143 5 139325697 to 139325752 55 - TSS region transcription start site region 54143
Tssr54144 5 139325757 to 139325768 11 - TSS region transcription start site region 54144
Tssr54145 5 139325771 to 139325772 1 - TSS region transcription start site region 54145
Cox19 5 139337822 to 139345166 7344 - protein coding gene cytochrome c oxidase assembly protein 19
Cpgi16879 5 139344930 to 139345404 474 CpG island CpG island 16879
Tssr54146 5 139345097 to 139345108 11 - TSS region transcription start site region 54146
Tssr54147 5 139345112 to 139345148 36 - TSS region transcription start site region 54147
Tssr54148 5 139345149 to 139345216 67 - TSS region transcription start site region 54148
Tssr49499 5 139352607 to 139352623 16 + TSS region transcription start site region 49499
Cyp2w1 5 139352617 to 139357033 4416 + protein coding gene cytochrome P450, family 2, subfamily w, polypeptide 1
Tssr49500 5 139354209 to 139354222 13 + TSS region transcription start site region 49500
Tssr49501 5 139354241 to 139354260 19 + TSS region transcription start site region 49501
3110082I17Rik 5 139359739 to 139460527 100788 - protein coding gene RIKEN cDNA 3110082I17 gene
Tssr49502 5 139364964 to 139364996 32 + TSS region transcription start site region 49502
Mir339 5 139369650 to 139369745 95 - miRNA gene microRNA 339
Cpgi16880 5 139371854 to 139372493 639 CpG island CpG island 16880
Tssr54149 5 139372177 to 139372201 24 - TSS region transcription start site region 54149
Tssr54150 5 139372213 to 139372242 29 - TSS region transcription start site region 54150
Tssr1727 5 139372243 to 139372256 13 - TSS region transcription start site region 1727
Tssr49503 5 139377688 to 139377710 22 + TSS region transcription start site region 49503
Gpr146 5 139377697 to 139396415 18718 + protein coding gene G protein-coupled receptor 146
Tssr49504 5 139377716 to 139377745 29 + TSS region transcription start site region 49504
Cpgi16881 5 139380119 to 139381188 1069 CpG island CpG island 16881
Tssr49505 5 139380632 to 139380707 75 + TSS region transcription start site region 49505
Tssr54151 5 139382276 to 139382326 50 - TSS region transcription start site region 54151
Tssr54152 5 139382894 to 139382908 14 - TSS region transcription start site region 54152
Tssr54153 5 139382920 to 139382949 29 - TSS region transcription start site region 54153
Tssr49506 5 139389894 to 139389920 26 + TSS region transcription start site region 49506
Tssr49507 5 139405278 to 139405297 19 + TSS region transcription start site region 49507
C130050O18Rik 5 139405280 to 139415623 10343 + protein coding gene RIKEN cDNA C130050O18 gene
Tssr49508 5 139405311 to 139405320 9 + TSS region transcription start site region 49508
Tssr54154 5 139406111 to 139406138 27 - TSS region transcription start site region 54154
Tssr49509 5 139406401 to 139406435 34 + TSS region transcription start site region 49509
Tssr49510 5 139406446 to 139406466 20 + TSS region transcription start site region 49510
Tssr49511 5 139406677 to 139406689 12 + TSS region transcription start site region 49511
Tssr54155 5 139408440 to 139408455 15 - TSS region transcription start site region 54155
Tssr54156 5 139408493 to 139408506 13 - TSS region transcription start site region 54156
Tssr54157 5 139408511 to 139408520 9 - TSS region transcription start site region 54157
Gper1 5 139423151 to 139427800 4649 + protein coding gene G protein-coupled estrogen receptor 1
Cpgi16882 5 139423168 to 139423449 281 CpG island CpG island 16882
Tssr49512 5 139423172 to 139423186 14 + TSS region transcription start site region 49512
Tssr49513 5 139423191 to 139423202 11 + TSS region transcription start site region 49513
Gm26285 5 139443599 to 139443705 106 + snRNA gene predicted gene, 26285
D5Dcr17 5 139445283 to 139445378 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 17
Cpgi16883 5 139460167 to 139460841 674 CpG island CpG island 16883
Tssr54158 5 139460490 to 139460500 10 - TSS region transcription start site region 54158
Tssr54159 5 139460501 to 139460549 48 - TSS region transcription start site region 54159
Tssr54160 5 139460604 to 139460639 35 - TSS region transcription start site region 54160
Zfand2a 5 139471216 to 139484491 13275 - protein coding gene zinc finger, AN1-type domain 2A
Tssr49514 5 139473016 to 139473059 43 + TSS region transcription start site region 49514
Tssr54161 5 139473138 to 139473182 44 - TSS region transcription start site region 54161
Tssr54162 5 139473258 to 139473269 11 - TSS region transcription start site region 54162
Tssr54163 5 139478292 to 139478309 17 - TSS region transcription start site region 54163
Tssr54164 5 139478555 to 139478571 16 - TSS region transcription start site region 54164
Tssr54165 5 139478934 to 139478948 14 - TSS region transcription start site region 54165
Tssr54166 5 139478978 to 139478984 6 - TSS region transcription start site region 54166
Tssr49515 5 139479403 to 139479423 20 + TSS region transcription start site region 49515
Cpgi16884 5 139484077 to 139484777 700 CpG island CpG island 16884
Tssr54167 5 139484391 to 139484408 17 - TSS region transcription start site region 54167
Tssr54168 5 139484420 to 139484473 53 - TSS region transcription start site region 54168
Tssr54169 5 139484475 to 139484496 21 - TSS region transcription start site region 54169
Tssr49516 5 139484681 to 139484721 40 + TSS region transcription start site region 49516
4930500L23Rik 5 139523751 to 139541339 17588 + lincRNA gene RIKEN cDNA 4930500L23 gene
D5Mit284 5 139524691 to 139524893 202 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 284
Cpgi16885 5 139535369 to 139535830 461 CpG island CpG island 16885
Cpgi16886 5 139540259 to 139541752 1493 CpG island CpG island 16886
Cpgi16887 5 139543327 to 139545021 1694 CpG island CpG island 16887
Tssr49517 5 139543862 to 139543871 9 + TSS region transcription start site region 49517
Tssr49518 5 139543889 to 139543904 15 + TSS region transcription start site region 49518
Uncx 5 139543898 to 139548179 4281 + protein coding gene UNC homeobox
Tssr49519 5 139543911 to 139543932 21 + TSS region transcription start site region 49519
Cpgi16888 5 139546302 to 139547958 1656 CpG island CpG island 16888
Tssr1728 5 139547862 to 139547873 11 + TSS region transcription start site region 1728
Tssr49520 5 139547944 to 139547955 11 + TSS region transcription start site region 49520
Tssr49521 5 139547970 to 139547982 12 + TSS region transcription start site region 49521
Tssr49522 5 139547995 to 139548004 9 + TSS region transcription start site region 49522
Cpgi16889 5 139548345 to 139548948 603 CpG island CpG island 16889
Cpgi16890 5 139551423 to 139551662 239 CpG island CpG island 16890
Cpgi16891 5 139552705 to 139552881 176 CpG island CpG island 16891
Cpgi16892 5 139553164 to 139553624 460 CpG island CpG island 16892
Cpgi16893 5 139557552 to 139557964 412 CpG island CpG island 16893
Cpgi16894 5 139558553 to 139558729 176 CpG island CpG island 16894
Cpgi16895 5 139585311 to 139585832 521 CpG island CpG island 16895
Cpgi16896 5 139599839 to 139600477 638 CpG island CpG island 16896
Cpgi16897 5 139610909 to 139611153 244 CpG island CpG island 16897
Cpgi16898 5 139619279 to 139620067 788 CpG island CpG island 16898