Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:138819587-139229608

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hypch 5 109090758 to 139133150 30042392 QTL hypercholesterolemia
Cpgi16868 5 138819952 to 138820290 338 CpG island CpG island 16868
Gm5294 5 138820080 to 138821619 1539 + protein coding gene predicted gene 5294
Cpgi16869 5 138820741 to 138821588 847 CpG island CpG island 16869
Tssr49480 5 138820963 to 138820968 5 + TSS region transcription start site region 49480
Gm30206 5 138823811 to 138825226 1415 - lncRNA gene predicted gene, 30206
Tssr1726 5 138847035 to 138847060 25 + TSS region transcription start site region 1726
Gm31891 5 138863046 to 138910604 47558 + pseudogene predicted gene, 31891
Cpgi16870 5 138894474 to 138894786 312 CpG island CpG island 16870
Gm38726 5 138934588 to 138945163 10575 + lncRNA gene predicted gene, 38726
Pdgfa 5 138976381 to 138997686 21305 - protein coding gene platelet derived growth factor, alpha
Tssr54109 5 138976512 to 138976516 4 - TSS region transcription start site region 54109
Tssr49481 5 138976974 to 138977016 42 + TSS region transcription start site region 49481
Tssr54110 5 138977003 to 138977055 52 - TSS region transcription start site region 54110
Tssr54111 5 138977076 to 138977092 16 - TSS region transcription start site region 54111
Tssr54112 5 138977095 to 138977106 11 - TSS region transcription start site region 54112
Tssr54113 5 138977136 to 138977152 16 - TSS region transcription start site region 54113
Tssr54114 5 138977185 to 138977196 11 - TSS region transcription start site region 54114
Cpgi16871 5 138992864 to 138996563 3699 CpG island CpG island 16871
Tssr54115 5 138993093 to 138993113 20 - TSS region transcription start site region 54115
Tssr54116 5 138994112 to 138994124 12 - TSS region transcription start site region 54116
Tssr54117 5 138994935 to 138994983 48 - TSS region transcription start site region 54117
Tssr49482 5 138995038 to 138995066 28 + TSS region transcription start site region 49482
6330403L08Rik 5 138995056 to 139000577 5521 + antisense lncRNA gene RIKEN cDNA 6330403L08 gene
Tssr54118 5 138995326 to 138995364 38 - TSS region transcription start site region 54118
Tssr54119 5 138995624 to 138995640 16 - TSS region transcription start site region 54119
Tssr54120 5 138996006 to 138996025 19 - TSS region transcription start site region 54120
Tssr54121 5 138996057 to 138996068 11 - TSS region transcription start site region 54121
Tssr54122 5 138996091 to 138996112 21 - TSS region transcription start site region 54122
Tssr49483 5 138996225 to 138996263 38 + TSS region transcription start site region 49483
Cpgi16872 5 138997101 to 138998571 1470 CpG island CpG island 16872
Tssr54123 5 138997610 to 138997627 17 - TSS region transcription start site region 54123
Tssr54124 5 138997635 to 138997646 11 - TSS region transcription start site region 54124
Prkar1b 5 139017306 to 139150001 132695 - protein coding gene protein kinase, cAMP dependent regulatory, type I beta
Tssr54125 5 139018400 to 139018411 11 - TSS region transcription start site region 54125
Tssr54126 5 139024587 to 139024608 21 - TSS region transcription start site region 54126
Tssr54127 5 139039153 to 139039154 1 - TSS region transcription start site region 54127
Cpgi16873 5 139129173 to 139130246 1073 CpG island CpG island 16873
Tssr54128 5 139129662 to 139129752 90 - TSS region transcription start site region 54128
Tssr54129 5 139129873 to 139129880 7 - TSS region transcription start site region 54129
Tssr54130 5 139130002 to 139130011 9 - TSS region transcription start site region 54130
Tssr54131 5 139130016 to 139130042 26 - TSS region transcription start site region 54131
Tssr54132 5 139130044 to 139130063 19 - TSS region transcription start site region 54132
Tssr54133 5 139130076 to 139130079 3 - TSS region transcription start site region 54133
Tssr54134 5 139130170 to 139130181 11 - TSS region transcription start site region 54134
D5Mit374 5 139133034 to 139133150 116 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 374
9330169B04Rik 5 139135827 to 139139417 3590 unclassified gene RIKEN cDNA 9330169B04 gene
Gm15672 5 139147576 to 139150693 3117 - unclassified non-coding RNA gene predicted gene 15672
Cpgi16874 5 139149524 to 139151120 1596 CpG island CpG island 16874
Tssr49484 5 139150139 to 139150146 7 + TSS region transcription start site region 49484
Tssr49485 5 139150200 to 139150209 9 + TSS region transcription start site region 49485
Tssr49486 5 139150211 to 139150249 38 + TSS region transcription start site region 49486
Dnaaf5 5 139150223 to 139186505 36282 + protein coding gene dynein, axonemal assembly factor 5
Tssr54135 5 139150659 to 139150723 64 - TSS region transcription start site region 54135
Tssr49487 5 139150824 to 139150833 9 + TSS region transcription start site region 49487
Tssr49488 5 139161801 to 139161851 50 + TSS region transcription start site region 49488
Tssr49489 5 139161879 to 139161888 9 + TSS region transcription start site region 49489
Tssr49490 5 139167077 to 139167083 6 + TSS region transcription start site region 49490
D5Dcr16 5 139184955 to 139185067 112 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 16
Cpgi16875 5 139200155 to 139201409 1254 CpG island CpG island 16875
Tssr49491 5 139200631 to 139200678 47 + TSS region transcription start site region 49491
Sun1 5 139200637 to 139249840 49203 + protein coding gene Sad1 and UNC84 domain containing 1
Tssr49492 5 139211934 to 139211948 14 + TSS region transcription start site region 49492
4930520M14Rik 5 139215469 to 139216356 887 - antisense lncRNA gene RIKEN cDNA 4930520M14 gene
Tssr54136 5 139216314 to 139216358 44 - TSS region transcription start site region 54136
Tssr49493 5 139217754 to 139217758 4 + TSS region transcription start site region 49493