Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:138384638-139124652

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa26 5 104435822 to 138557193 34121371 QTL B.burgdorferi-associated arthritis 26
Cia14 5 113172519 to 138557193 25384674 QTL collagen induced arthritis QTL 14
Gm10874 5 138363719 to 138388287 24568 + lincRNA gene predicted gene 10874
Cyp3a61-ps1 5 138383812 to 138391594 7782 - pseudogene cytochrome P450, family 3, subfamily a, member 61, pseudogene 1
Gm48029 5 138412594 to 138412913 319 - pseudogene predicted gene, 48029
Cpgi16864 5 138441343 to 138441966 623 CpG island CpG island 16864
Zfp157 5 138441468 to 138460694 19226 + protein coding gene zinc finger protein 157
Tssr49448 5 138441471 to 138441530 59 + TSS region transcription start site region 49448
Scram1 5 138457140 to 138457140 0 QTL spinal cord resistance to astrocytoma modifier 1
Rvfs3 5 138457140 to 26236236 -112220904 QTL Rift Valley fever susceptibility 3
Gm5564 5 138504813 to 138505779 966 + pseudogene predicted gene 5564
Vmn2r-ps24 5 138532077 to 138532934 857 + pseudogene vomeronasal 2, receptor, pseudogene 24
Bpq4 5 138556974 to 138557193 219 QTL blood pressure QTL 4
D5Mit31 5 138556974 to 138557193 219 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 31
D5Dcr15 5 138557082 to 138557187 105 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 15
1700123K08Rik 5 138561840 to 138564712 2872 - protein coding gene RIKEN cDNA 1700123K08 gene
Tssr54100 5 138564671 to 138564707 36 - TSS region transcription start site region 54100
Zfp68 5 138603652 to 138619743 16091 - protein coding gene zinc finger protein 68
Gm24082 5 138606699 to 138606781 82 + miRNA gene predicted gene, 24082
Tssr49449 5 138610699 to 138610709 10 + TSS region transcription start site region 49449
Gm15497 5 138610739 to 138611289 550 + pseudogene predicted gene 15497
Tssr49450 5 138619282 to 138619295 13 + TSS region transcription start site region 49450
Gm42815 5 138619288 to 138620757 1469 + unclassified gene predicted gene 42815
Tssr49451 5 138619301 to 138619326 25 + TSS region transcription start site region 49451
Cpgi16865 5 138619365 to 138619825 460 CpG island CpG island 16865
Tssr54101 5 138619664 to 138619683 19 - TSS region transcription start site region 54101
Tssr54102 5 138619687 to 138619701 14 - TSS region transcription start site region 54102
Tssr54103 5 138619702 to 138619747 45 - TSS region transcription start site region 54103
Tssr54104 5 138619751 to 138619758 7 - TSS region transcription start site region 54104
Cpgi16866 5 138622753 to 138623309 556 CpG island CpG island 16866
Tssr49452 5 138622838 to 138622893 55 + TSS region transcription start site region 49452
A430033K04Rik 5 138622859 to 138648917 26058 + protein coding gene RIKEN cDNA A430033K04 gene
Tssr49453 5 138707557 to 138707585 28 + TSS region transcription start site region 49453
Tssr49454 5 138707601 to 138707616 15 + TSS region transcription start site region 49454
Tssr54105 5 138708541 to 138708546 5 - TSS region transcription start site region 54105
Gm38232 5 138725395 to 138726185 790 + unclassified gene predicted gene, 38232
Cpgi16867 5 138754101 to 138756572 2471 CpG island CpG island 16867
Tssr49455 5 138754417 to 138754428 11 + TSS region transcription start site region 49455
Tssr49456 5 138754459 to 138754522 63 + TSS region transcription start site region 49456
Fam20c 5 138754514 to 138810077 55563 + protein coding gene family with sequence similarity 20, member C
Tssr49457 5 138754525 to 138754607 82 + TSS region transcription start site region 49457
Tssr49458 5 138754638 to 138754652 14 + TSS region transcription start site region 49458
Tssr49459 5 138754770 to 138754790 20 + TSS region transcription start site region 49459
Tssr49460 5 138754808 to 138754819 11 + TSS region transcription start site region 49460
Tssr54106 5 138754879 to 138754910 31 - TSS region transcription start site region 54106
Tssr49461 5 138755072 to 138755090 18 + TSS region transcription start site region 49461
Tssr54107 5 138755411 to 138755432 21 - TSS region transcription start site region 54107
Tssr49462 5 138757870 to 138757884 14 + TSS region transcription start site region 49462
Tssr49463 5 138770200 to 138770208 8 + TSS region transcription start site region 49463
Tssr49464 5 138774269 to 138774285 16 + TSS region transcription start site region 49464
Tssr49465 5 138775334 to 138775370 36 + TSS region transcription start site region 49465
Tssr49466 5 138775401 to 138775412 11 + TSS region transcription start site region 49466
Tssr49467 5 138780505 to 138780512 7 + TSS region transcription start site region 49467
Tssr49468 5 138789282 to 138789317 35 + TSS region transcription start site region 49468
D5Mit121 5 138790582 to 138790731 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 121
Tssr49469 5 138793223 to 138793236 13 + TSS region transcription start site region 49469
Tssr49470 5 138799576 to 138799592 16 + TSS region transcription start site region 49470
Tssr49471 5 138799612 to 138799636 24 + TSS region transcription start site region 49471
Tssr49472 5 138799639 to 138799650 11 + TSS region transcription start site region 49472
Tssr49473 5 138799667 to 138799679 12 + TSS region transcription start site region 49473
Tssr49474 5 138799701 to 138799721 20 + TSS region transcription start site region 49474
Tssr49475 5 138804711 to 138804742 31 + TSS region transcription start site region 49475
Tssr49476 5 138807247 to 138807265 18 + TSS region transcription start site region 49476
Tssr49477 5 138808852 to 138808872 20 + TSS region transcription start site region 49477
Tssr49478 5 138809578 to 138809597 19 + TSS region transcription start site region 49478
Tssr49479 5 138809845 to 138809890 45 + TSS region transcription start site region 49479
Tssr54108 5 138810041 to 138810071 30 - TSS region transcription start site region 54108
Cpgi16868 5 138819952 to 138820290 338 CpG island CpG island 16868
Gm5294 5 138820080 to 138821619 1539 + protein coding gene predicted gene 5294
Cpgi16869 5 138820741 to 138821588 847 CpG island CpG island 16869
Tssr49480 5 138820963 to 138820968 5 + TSS region transcription start site region 49480
Gm30206 5 138823811 to 138825226 1415 - lncRNA gene predicted gene, 30206
Tssr1726 5 138847035 to 138847060 25 + TSS region transcription start site region 1726
Gm31891 5 138863046 to 138910604 47558 + pseudogene predicted gene, 31891
Cpgi16870 5 138894474 to 138894786 312 CpG island CpG island 16870
Gm38726 5 138934588 to 138945163 10575 + lncRNA gene predicted gene, 38726
Pdgfa 5 138976381 to 138997686 21305 - protein coding gene platelet derived growth factor, alpha
Tssr54109 5 138976512 to 138976516 4 - TSS region transcription start site region 54109
Tssr49481 5 138976974 to 138977016 42 + TSS region transcription start site region 49481
Tssr54110 5 138977003 to 138977055 52 - TSS region transcription start site region 54110
Tssr54111 5 138977076 to 138977092 16 - TSS region transcription start site region 54111
Tssr54112 5 138977095 to 138977106 11 - TSS region transcription start site region 54112
Tssr54113 5 138977136 to 138977152 16 - TSS region transcription start site region 54113
Tssr54114 5 138977185 to 138977196 11 - TSS region transcription start site region 54114
Cpgi16871 5 138992864 to 138996563 3699 CpG island CpG island 16871
Tssr54115 5 138993093 to 138993113 20 - TSS region transcription start site region 54115
Tssr54116 5 138994112 to 138994124 12 - TSS region transcription start site region 54116
Tssr54117 5 138994935 to 138994983 48 - TSS region transcription start site region 54117
Tssr49482 5 138995038 to 138995066 28 + TSS region transcription start site region 49482
6330403L08Rik 5 138995056 to 139000577 5521 + antisense lncRNA gene RIKEN cDNA 6330403L08 gene
Tssr54118 5 138995326 to 138995364 38 - TSS region transcription start site region 54118
Tssr54119 5 138995624 to 138995640 16 - TSS region transcription start site region 54119
Tssr54120 5 138996006 to 138996025 19 - TSS region transcription start site region 54120
Tssr54121 5 138996057 to 138996068 11 - TSS region transcription start site region 54121
Tssr54122 5 138996091 to 138996112 21 - TSS region transcription start site region 54122
Tssr49483 5 138996225 to 138996263 38 + TSS region transcription start site region 49483
Cpgi16872 5 138997101 to 138998571 1470 CpG island CpG island 16872
Tssr54123 5 138997610 to 138997627 17 - TSS region transcription start site region 54123
Tssr54124 5 138997635 to 138997646 11 - TSS region transcription start site region 54124
Prkar1b 5 139017306 to 139150001 132695 - protein coding gene protein kinase, cAMP dependent regulatory, type I beta
Tssr54125 5 139018400 to 139018411 11 - TSS region transcription start site region 54125
Tssr54126 5 139024587 to 139024608 21 - TSS region transcription start site region 54126
Tssr54127 5 139039153 to 139039154 1 - TSS region transcription start site region 54127