MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 5:138312594-138512913

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17 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Tssr49446	5	138341923 to 138341936	13	+	TSS region	transcription start site region 49446
Tssr49447	5	138341941 to 138341975	34	+	TSS region	transcription start site region 49447
Pvrig	5	138341961 to 138343557	1596	+	protein coding gene	poliovirus receptor related immunoglobulin domain containing
Pvrig-ps	5	138359838 to 138360041	203	+	pseudogene	poliovirus receptor related immunoglobulin domain containing, pseudogene
Gm10874	5	138363719 to 138388287	24568	+	lincRNA gene	predicted gene 10874
Got2-ps1	5	138364260 to 138365552	1292	-	pseudogene	glutamatic-oxaloacetic transaminase 2, mitochondrial, pseudogene 1
Cpgi16863	5	138364680 to 138364903	223		CpG island	CpG island 16863
Tssr54099	5	138365608 to 138365610	2	-	TSS region	transcription start site region 54099
Gm25525	5	138378591 to 138378697	106	+	snRNA gene	predicted gene, 25525
Cyp3a61-ps1	5	138383812 to 138391594	7782	-	pseudogene	cytochrome P450, family 3, subfamily a, member 61, pseudogene 1
Gm48029	5	138412594 to 138412913	319	-	pseudogene	predicted gene, 48029
Cpgi16864	5	138441343 to 138441966	623		CpG island	CpG island 16864
Zfp157	5	138441468 to 138460694	19226	+	protein coding gene	zinc finger protein 157
Tssr49448	5	138441471 to 138441530	59	+	TSS region	transcription start site region 49448
Rvfs3	5	138457140 to 26236236	-112220904		QTL	Rift Valley fever susceptibility 3
Scram1	5	138457140 to 138457140	0		QTL	spinal cord resistance to astrocytoma modifier 1
Gm5564	5	138504813 to 138505779	966	+	pseudogene	predicted gene 5564