Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:138297594-138527913

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18 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stag3 5 138280240 to 138312393 32153 + protein coding gene stromal antigen 3
Tssr49446 5 138341923 to 138341936 13 + TSS region transcription start site region 49446
Tssr49447 5 138341941 to 138341975 34 + TSS region transcription start site region 49447
Pvrig 5 138341961 to 138343557 1596 + protein coding gene poliovirus receptor related immunoglobulin domain containing
Pvrig-ps 5 138359838 to 138360041 203 + pseudogene poliovirus receptor related immunoglobulin domain containing, pseudogene
Gm10874 5 138363719 to 138388287 24568 + lincRNA gene predicted gene 10874
Got2-ps1 5 138364260 to 138365552 1292 - pseudogene glutamatic-oxaloacetic transaminase 2, mitochondrial, pseudogene 1
Cpgi16863 5 138364680 to 138364903 223 CpG island CpG island 16863
Tssr54099 5 138365608 to 138365610 2 - TSS region transcription start site region 54099
Gm25525 5 138378591 to 138378697 106 + snRNA gene predicted gene, 25525
Cyp3a61-ps1 5 138383812 to 138391594 7782 - pseudogene cytochrome P450, family 3, subfamily a, member 61, pseudogene 1
Gm48029 5 138412594 to 138412913 319 - pseudogene predicted gene, 48029
Cpgi16864 5 138441343 to 138441966 623 CpG island CpG island 16864
Zfp157 5 138441468 to 138460694 19226 + protein coding gene zinc finger protein 157
Tssr49448 5 138441471 to 138441530 59 + TSS region transcription start site region 49448
Scram1 5 138457140 to 138457140 0 QTL spinal cord resistance to astrocytoma modifier 1
Rvfs3 5 138457140 to 26236236 -112220904 QTL Rift Valley fever susceptibility 3
Gm5564 5 138504813 to 138505779 966 + pseudogene predicted gene 5564