Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:138279813-138730779

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa26 5 104435822 to 138557193 34121371 QTL B.burgdorferi-associated arthritis 26
Cia14 5 113172519 to 138557193 25384674 QTL collagen induced arthritis QTL 14
Gm43720 5 138264952 to 138279958 15006 - protein coding gene predicted gene 43720
Gpc2 5 138273655 to 138280005 6350 - protein coding gene glypican 2 (cerebroglycan)
Cpgi16862 5 138279617 to 138280733 1116 CpG island CpG island 16862
Tssr54098 5 138279960 to 138280016 56 - TSS region transcription start site region 54098
Stag3 5 138280240 to 138312393 32153 + protein coding gene stromal antigen 3
Tssr49442 5 138280337 to 138280355 18 + TSS region transcription start site region 49442
Tssr49443 5 138280492 to 138280504 12 + TSS region transcription start site region 49443
Tssr49444 5 138280516 to 138280537 21 + TSS region transcription start site region 49444
Tssr49445 5 138280538 to 138280563 25 + TSS region transcription start site region 49445
Tssr49446 5 138341923 to 138341936 13 + TSS region transcription start site region 49446
Tssr49447 5 138341941 to 138341975 34 + TSS region transcription start site region 49447
Pvrig 5 138341961 to 138343557 1596 + protein coding gene poliovirus receptor related immunoglobulin domain containing
Pvrig-ps 5 138359838 to 138360041 203 + pseudogene poliovirus receptor related immunoglobulin domain containing, pseudogene
Gm10874 5 138363719 to 138388287 24568 + lincRNA gene predicted gene 10874
Got2-ps1 5 138364260 to 138365552 1292 - pseudogene glutamatic-oxaloacetic transaminase 2, mitochondrial, pseudogene 1
Cpgi16863 5 138364680 to 138364903 223 CpG island CpG island 16863
Tssr54099 5 138365608 to 138365610 2 - TSS region transcription start site region 54099
Gm25525 5 138378591 to 138378697 106 + snRNA gene predicted gene, 25525
Cyp3a61-ps1 5 138383812 to 138391594 7782 - pseudogene cytochrome P450, family 3, subfamily a, member 61, pseudogene 1
Gm48029 5 138412594 to 138412913 319 - pseudogene predicted gene, 48029
Cpgi16864 5 138441343 to 138441966 623 CpG island CpG island 16864
Zfp157 5 138441468 to 138460694 19226 + protein coding gene zinc finger protein 157
Tssr49448 5 138441471 to 138441530 59 + TSS region transcription start site region 49448
Rvfs3 5 138457140 to 26236236 -112220904 QTL Rift Valley fever susceptibility 3
Scram1 5 138457140 to 138457140 0 QTL spinal cord resistance to astrocytoma modifier 1
Gm5564 5 138504813 to 138505779 966 + pseudogene predicted gene 5564
Vmn2r-ps24 5 138532077 to 138532934 857 + pseudogene vomeronasal 2, receptor, pseudogene 24
D5Mit31 5 138556974 to 138557193 219 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 31
Bpq4 5 138556974 to 138557193 219 QTL blood pressure QTL 4
D5Dcr15 5 138557082 to 138557187 105 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 15
1700123K08Rik 5 138561840 to 138564712 2872 - protein coding gene RIKEN cDNA 1700123K08 gene
Tssr54100 5 138564671 to 138564707 36 - TSS region transcription start site region 54100
Zfp68 5 138603652 to 138619743 16091 - protein coding gene zinc finger protein 68
Gm24082 5 138606699 to 138606781 82 + miRNA gene predicted gene, 24082
Tssr49449 5 138610699 to 138610709 10 + TSS region transcription start site region 49449
Gm15497 5 138610739 to 138611289 550 + pseudogene predicted gene 15497
Tssr49450 5 138619282 to 138619295 13 + TSS region transcription start site region 49450
Gm42815 5 138619288 to 138620757 1469 + unclassified gene predicted gene 42815
Tssr49451 5 138619301 to 138619326 25 + TSS region transcription start site region 49451
Cpgi16865 5 138619365 to 138619825 460 CpG island CpG island 16865
Tssr54101 5 138619664 to 138619683 19 - TSS region transcription start site region 54101
Tssr54102 5 138619687 to 138619701 14 - TSS region transcription start site region 54102
Tssr54103 5 138619702 to 138619747 45 - TSS region transcription start site region 54103
Tssr54104 5 138619751 to 138619758 7 - TSS region transcription start site region 54104
Cpgi16866 5 138622753 to 138623309 556 CpG island CpG island 16866
Tssr49452 5 138622838 to 138622893 55 + TSS region transcription start site region 49452
A430033K04Rik 5 138622859 to 138648917 26058 + protein coding gene RIKEN cDNA A430033K04 gene
Tssr49453 5 138707557 to 138707585 28 + TSS region transcription start site region 49453
Tssr49454 5 138707601 to 138707616 15 + TSS region transcription start site region 49454
Tssr54105 5 138708541 to 138708546 5 - TSS region transcription start site region 54105
Gm38232 5 138725395 to 138726185 790 + unclassified gene predicted gene, 38232