Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:138271941-138411975

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23 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gal3st4 5 138264921 to 138272840 7919 - protein coding gene galactose-3-O-sulfotransferase 4
Gm43720 5 138264952 to 138279958 15006 - protein coding gene predicted gene 43720
Tssr54096 5 138272733 to 138272743 10 - TSS region transcription start site region 54096
Tssr54097 5 138272786 to 138272817 31 - TSS region transcription start site region 54097
Gpc2 5 138273655 to 138280005 6350 - protein coding gene glypican 2 (cerebroglycan)
Cpgi16861 5 138275480 to 138276065 585 CpG island CpG island 16861
Cpgi16862 5 138279617 to 138280733 1116 CpG island CpG island 16862
Tssr54098 5 138279960 to 138280016 56 - TSS region transcription start site region 54098
Stag3 5 138280240 to 138312393 32153 + protein coding gene stromal antigen 3
Tssr49442 5 138280337 to 138280355 18 + TSS region transcription start site region 49442
Tssr49443 5 138280492 to 138280504 12 + TSS region transcription start site region 49443
Tssr49444 5 138280516 to 138280537 21 + TSS region transcription start site region 49444
Tssr49445 5 138280538 to 138280563 25 + TSS region transcription start site region 49445
Tssr49446 5 138341923 to 138341936 13 + TSS region transcription start site region 49446
Tssr49447 5 138341941 to 138341975 34 + TSS region transcription start site region 49447
Pvrig 5 138341961 to 138343557 1596 + protein coding gene poliovirus receptor related immunoglobulin domain containing
Pvrig-ps 5 138359838 to 138360041 203 + pseudogene poliovirus receptor related immunoglobulin domain containing, pseudogene
Gm10874 5 138363719 to 138388287 24568 + lincRNA gene predicted gene 10874
Got2-ps1 5 138364260 to 138365552 1292 - pseudogene glutamatic-oxaloacetic transaminase 2, mitochondrial, pseudogene 1
Cpgi16863 5 138364680 to 138364903 223 CpG island CpG island 16863
Tssr54099 5 138365608 to 138365610 2 - TSS region transcription start site region 54099
Gm25525 5 138378591 to 138378697 106 + snRNA gene predicted gene, 25525
Cyp3a61-ps1 5 138383812 to 138391594 7782 - pseudogene cytochrome P450, family 3, subfamily a, member 61, pseudogene 1