Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:138264260-138465552

31 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
6330418K02Rik	5	138264045 to 138266661	2616	+	antisense lncRNA gene	RIKEN cDNA 6330418K02 gene
Gal3st4	5	138264921 to 138272840	7919	-	protein coding gene	galactose-3-O-sulfotransferase 4
Gm43720	5	138264952 to 138279958	15006	-	protein coding gene	predicted gene 43720
Tssr54095	5	138271504 to 138271519	15	-	TSS region	transcription start site region 54095
Tssr54096	5	138272733 to 138272743	10	-	TSS region	transcription start site region 54096
Tssr54097	5	138272786 to 138272817	31	-	TSS region	transcription start site region 54097
Gpc2	5	138273655 to 138280005	6350	-	protein coding gene	glypican 2 (cerebroglycan)
Cpgi16861	5	138275480 to 138276065	585		CpG island	CpG island 16861
Cpgi16862	5	138279617 to 138280733	1116		CpG island	CpG island 16862
Tssr54098	5	138279960 to 138280016	56	-	TSS region	transcription start site region 54098
Stag3	5	138280240 to 138312393	32153	+	protein coding gene	stromal antigen 3
Tssr49442	5	138280337 to 138280355	18	+	TSS region	transcription start site region 49442
Tssr49443	5	138280492 to 138280504	12	+	TSS region	transcription start site region 49443
Tssr49444	5	138280516 to 138280537	21	+	TSS region	transcription start site region 49444
Tssr49445	5	138280538 to 138280563	25	+	TSS region	transcription start site region 49445
Tssr49446	5	138341923 to 138341936	13	+	TSS region	transcription start site region 49446
Tssr49447	5	138341941 to 138341975	34	+	TSS region	transcription start site region 49447
Pvrig	5	138341961 to 138343557	1596	+	protein coding gene	poliovirus receptor related immunoglobulin domain containing
Pvrig-ps	5	138359838 to 138360041	203	+	pseudogene	poliovirus receptor related immunoglobulin domain containing, pseudogene
Gm10874	5	138363719 to 138388287	24568	+	lincRNA gene	predicted gene 10874
Got2-ps1	5	138364260 to 138365552	1292	-	pseudogene	glutamatic-oxaloacetic transaminase 2, mitochondrial, pseudogene 1
Cpgi16863	5	138364680 to 138364903	223		CpG island	CpG island 16863
Tssr54099	5	138365608 to 138365610	2	-	TSS region	transcription start site region 54099
Gm25525	5	138378591 to 138378697	106	+	snRNA gene	predicted gene, 25525
Cyp3a61-ps1	5	138383812 to 138391594	7782	-	pseudogene	cytochrome P450, family 3, subfamily a, member 61, pseudogene 1
Gm48029	5	138412594 to 138412913	319	-	pseudogene	predicted gene, 48029
Cpgi16864	5	138441343 to 138441966	623		CpG island	CpG island 16864
Zfp157	5	138441468 to 138460694	19226	+	protein coding gene	zinc finger protein 157
Tssr49448	5	138441471 to 138441530	59	+	TSS region	transcription start site region 49448
Scram1	5	138457140 to 138457140	0		QTL	spinal cord resistance to astrocytoma modifier 1
Rvfs3	5	138457140 to 26236236	-112220904		QTL	Rift Valley fever susceptibility 3