Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:138101343-138781966

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161 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa26 5 104435822 to 138557193 34121371 QTL B.burgdorferi-associated arthritis 26
Cia14 5 113172519 to 138557193 25384674 QTL collagen induced arthritis QTL 14
Zkscan1 5 138085084 to 138107822 22738 + protein coding gene zinc finger with KRAB and SCAN domains 1
Tssr49412 5 138103735 to 138103739 4 + TSS region transcription start site region 49412
Gm43493 5 138106907 to 138107108 201 + pseudogene predicted gene 43493
Cpgi16853 5 138116785 to 138117281 496 CpG island CpG island 16853
Tssr54072 5 138116851 to 138116868 17 - TSS region transcription start site region 54072
Zscan21 5 138116903 to 138134265 17362 + protein coding gene zinc finger and SCAN domain containing 21
Tssr49413 5 138116911 to 138116986 75 + TSS region transcription start site region 49413
Zfp113 5 138139702 to 138155744 16042 - protein coding gene zinc finger protein 113
Cpgi16854 5 138155167 to 138155866 699 CpG island CpG island 16854
Tssr54073 5 138155694 to 138155740 46 - TSS region transcription start site region 54073
Cpgi16855 5 138160926 to 138161649 723 CpG island CpG island 16855
Tssr49414 5 138161083 to 138161116 33 + TSS region transcription start site region 49414
Cops6 5 138161102 to 138163984 2882 + protein coding gene COP9 signalosome subunit 6
Tssr49415 5 138161131 to 138161144 13 + TSS region transcription start site region 49415
Tssr49416 5 138161698 to 138161712 14 + TSS region transcription start site region 49416
Tssr49417 5 138162182 to 138162191 9 + TSS region transcription start site region 49417
Mcm7 5 138164589 to 138171883 7294 - protein coding gene minichromosome maintenance complex component 7
Mirc3 5 138165321 to 138165818 497 complex/cluster/region microRNA cluster 3, including Mir25 through Mir106b
Mir25 5 138165321 to 138165404 83 - miRNA gene microRNA 25
Mir93 5 138165523 to 138165610 87 - miRNA gene microRNA 93
Mir106b 5 138165737 to 138165818 81 - miRNA gene microRNA 106b
Cpgi16856 5 138170882 to 138172419 1537 CpG island CpG island 16856
Tssr1724 5 138170974 to 138170986 12 - TSS region transcription start site region 1724
Tssr54074 5 138170992 to 138171033 41 - TSS region transcription start site region 54074
Tssr54075 5 138171216 to 138171246 30 - TSS region transcription start site region 54075
Tssr54076 5 138171248 to 138171274 26 - TSS region transcription start site region 54076
Tssr49418 5 138171337 to 138171402 65 + TSS region transcription start site region 49418
Tssr54077 5 138171813 to 138171816 3 - TSS region transcription start site region 54077
Tssr54078 5 138171822 to 138171833 11 - TSS region transcription start site region 54078
Tssr54079 5 138171844 to 138171887 43 - TSS region transcription start site region 54079
Tssr49419 5 138171997 to 138172021 24 + TSS region transcription start site region 49419
Ap4m1 5 138172021 to 138180429 8408 + protein coding gene adaptor-related protein complex AP-4, mu 1
Tssr49420 5 138172110 to 138172132 22 + TSS region transcription start site region 49420
Tssr49421 5 138172141 to 138172188 47 + TSS region transcription start site region 49421
Tssr54080 5 138172358 to 138172365 7 - TSS region transcription start site region 54080
Tssr54081 5 138172383 to 138172418 35 - TSS region transcription start site region 54081
Taf6 5 138178617 to 138187446 8829 - protein coding gene TATA-box binding protein associated factor 6
Tssr49422 5 138180146 to 138180150 4 + TSS region transcription start site region 49422
Tssr54082 5 138184711 to 138184722 11 - TSS region transcription start site region 54082
Cpgi16857 5 138186938 to 138187291 353 CpG island CpG island 16857
Tssr54083 5 138187177 to 138187237 60 - TSS region transcription start site region 54083
Tssr54084 5 138187417 to 138187463 46 - TSS region transcription start site region 54084
Tssr49423 5 138187443 to 138187462 19 + TSS region transcription start site region 49423
Tssr49424 5 138187499 to 138187521 22 + TSS region transcription start site region 49424
Tssr49425 5 138187523 to 138187566 43 + TSS region transcription start site region 49425
Cnpy4 5 138187535 to 138193894 6359 + protein coding gene canopy FGF signaling regulator 4
Cpgi16858 5 138194181 to 138195273 1092 CpG island CpG island 16858
Tssr49426 5 138194277 to 138194326 49 + TSS region transcription start site region 49426
Mblac1 5 138194314 to 138195621 1307 + protein coding gene metallo-beta-lactamase domain containing 1
Tssr54085 5 138195545 to 138195552 7 - TSS region transcription start site region 54085
Tssr54086 5 138195633 to 138195658 25 - TSS region transcription start site region 54086
Gm454 5 138203609 to 138207308 3699 - lincRNA gene predicted gene 454
Tssr54087 5 138207269 to 138207301 32 - TSS region transcription start site region 54087
Tssr54088 5 138207302 to 138207317 15 - TSS region transcription start site region 54088
Gm43645 5 138207508 to 138207972 464 + lincRNA gene predicted gene 43645
D5Mit98 5 138218095 to 138218250 155 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 98
D5Dcr14 5 138218148 to 138218251 103 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 14
Tssr49427 5 138219733 to 138219740 7 + TSS region transcription start site region 49427
Gm22956 5 138219737 to 138219816 79 + snRNA gene predicted gene, 22956
Nxpe5 5 138225898 to 138253363 27465 + protein coding gene neurexophilin and PC-esterase domain family, member 5
Tssr54089 5 138227380 to 138227418 38 - TSS region transcription start site region 54089
Tssr49428 5 138229739 to 138229749 10 + TSS region transcription start site region 49428
Tssr49429 5 138229768 to 138229779 11 + TSS region transcription start site region 49429
Tssr49430 5 138229786 to 138229795 9 + TSS region transcription start site region 49430
Tssr49431 5 138229812 to 138229819 7 + TSS region transcription start site region 49431
Tssr49432 5 138229834 to 138229849 15 + TSS region transcription start site region 49432
Tssr49433 5 138229867 to 138229881 14 + TSS region transcription start site region 49433
Tssr1725 5 138231043 to 138231076 33 + TSS region transcription start site region 1725
Cpgi16859 5 138255480 to 138256019 539 CpG island CpG island 16859
Lamtor4 5 138255482 to 138259395 3913 + protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 4
Tssr54090 5 138255542 to 138255600 58 - TSS region transcription start site region 54090
Tssr49434 5 138255714 to 138255725 11 + TSS region transcription start site region 49434
Tssr49435 5 138255727 to 138255788 61 + TSS region transcription start site region 49435
Tssr49436 5 138255855 to 138255866 11 + TSS region transcription start site region 49436
Tssr49437 5 138256067 to 138256123 56 + TSS region transcription start site region 49437
Tssr49438 5 138256124 to 138256135 11 + TSS region transcription start site region 49438
Map11 5 138259656 to 138264033 4377 - protein coding gene microtubule associated protein 11
Tssr49439 5 138262347 to 138262369 22 + TSS region transcription start site region 49439
Tssr49440 5 138262397 to 138262418 21 + TSS region transcription start site region 49440
Cpgi16860 5 138262899 to 138264149 1250 CpG island CpG island 16860
Tssr54091 5 138263117 to 138263133 16 - TSS region transcription start site region 54091
Tssr54092 5 138263942 to 138263988 46 - TSS region transcription start site region 54092
Tssr54093 5 138264013 to 138264060 47 - TSS region transcription start site region 54093
6330418K02Rik 5 138264045 to 138266661 2616 + antisense lncRNA gene RIKEN cDNA 6330418K02 gene
Tssr49441 5 138264057 to 138264097 40 + TSS region transcription start site region 49441
Tssr54094 5 138264122 to 138264147 25 - TSS region transcription start site region 54094
Gal3st4 5 138264921 to 138272840 7919 - protein coding gene galactose-3-O-sulfotransferase 4
Gm43720 5 138264952 to 138279958 15006 - protein coding gene predicted gene 43720
Tssr54095 5 138271504 to 138271519 15 - TSS region transcription start site region 54095
Tssr54096 5 138272733 to 138272743 10 - TSS region transcription start site region 54096
Tssr54097 5 138272786 to 138272817 31 - TSS region transcription start site region 54097
Gpc2 5 138273655 to 138280005 6350 - protein coding gene glypican 2 (cerebroglycan)
Cpgi16861 5 138275480 to 138276065 585 CpG island CpG island 16861
Cpgi16862 5 138279617 to 138280733 1116 CpG island CpG island 16862
Tssr54098 5 138279960 to 138280016 56 - TSS region transcription start site region 54098
Stag3 5 138280240 to 138312393 32153 + protein coding gene stromal antigen 3
Tssr49442 5 138280337 to 138280355 18 + TSS region transcription start site region 49442
Tssr49443 5 138280492 to 138280504 12 + TSS region transcription start site region 49443
Tssr49444 5 138280516 to 138280537 21 + TSS region transcription start site region 49444
Tssr49445 5 138280538 to 138280563 25 + TSS region transcription start site region 49445
Tssr49446 5 138341923 to 138341936 13 + TSS region transcription start site region 49446
Tssr49447 5 138341941 to 138341975 34 + TSS region transcription start site region 49447
Pvrig 5 138341961 to 138343557 1596 + protein coding gene poliovirus receptor related immunoglobulin domain containing
Pvrig-ps 5 138359838 to 138360041 203 + pseudogene poliovirus receptor related immunoglobulin domain containing, pseudogene
Gm10874 5 138363719 to 138388287 24568 + lincRNA gene predicted gene 10874
Got2-ps1 5 138364260 to 138365552 1292 - pseudogene glutamatic-oxaloacetic transaminase 2, mitochondrial, pseudogene 1
Cpgi16863 5 138364680 to 138364903 223 CpG island CpG island 16863
Tssr54099 5 138365608 to 138365610 2 - TSS region transcription start site region 54099
Gm25525 5 138378591 to 138378697 106 + snRNA gene predicted gene, 25525
Cyp3a61-ps1 5 138383812 to 138391594 7782 - pseudogene cytochrome P450, family 3, subfamily a, member 61, pseudogene 1
Gm48029 5 138412594 to 138412913 319 - pseudogene predicted gene, 48029
Cpgi16864 5 138441343 to 138441966 623 CpG island CpG island 16864
Zfp157 5 138441468 to 138460694 19226 + protein coding gene zinc finger protein 157
Tssr49448 5 138441471 to 138441530 59 + TSS region transcription start site region 49448
Rvfs3 5 138457140 to 26236236 -112220904 QTL Rift Valley fever susceptibility 3
Scram1 5 138457140 to 138457140 0 QTL spinal cord resistance to astrocytoma modifier 1
Gm5564 5 138504813 to 138505779 966 + pseudogene predicted gene 5564
Vmn2r-ps24 5 138532077 to 138532934 857 + pseudogene vomeronasal 2, receptor, pseudogene 24
D5Mit31 5 138556974 to 138557193 219 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 31
Bpq4 5 138556974 to 138557193 219 QTL blood pressure QTL 4
D5Dcr15 5 138557082 to 138557187 105 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 15
1700123K08Rik 5 138561840 to 138564712 2872 - protein coding gene RIKEN cDNA 1700123K08 gene
Tssr54100 5 138564671 to 138564707 36 - TSS region transcription start site region 54100
Zfp68 5 138603652 to 138619743 16091 - protein coding gene zinc finger protein 68
Gm24082 5 138606699 to 138606781 82 + miRNA gene predicted gene, 24082
Tssr49449 5 138610699 to 138610709 10 + TSS region transcription start site region 49449
Gm15497 5 138610739 to 138611289 550 + pseudogene predicted gene 15497
Tssr49450 5 138619282 to 138619295 13 + TSS region transcription start site region 49450
Gm42815 5 138619288 to 138620757 1469 + unclassified gene predicted gene 42815
Tssr49451 5 138619301 to 138619326 25 + TSS region transcription start site region 49451
Cpgi16865 5 138619365 to 138619825 460 CpG island CpG island 16865
Tssr54101 5 138619664 to 138619683 19 - TSS region transcription start site region 54101
Tssr54102 5 138619687 to 138619701 14 - TSS region transcription start site region 54102
Tssr54103 5 138619702 to 138619747 45 - TSS region transcription start site region 54103
Tssr54104 5 138619751 to 138619758 7 - TSS region transcription start site region 54104
Cpgi16866 5 138622753 to 138623309 556 CpG island CpG island 16866
Tssr49452 5 138622838 to 138622893 55 + TSS region transcription start site region 49452
A430033K04Rik 5 138622859 to 138648917 26058 + protein coding gene RIKEN cDNA A430033K04 gene
Tssr49453 5 138707557 to 138707585 28 + TSS region transcription start site region 49453
Tssr49454 5 138707601 to 138707616 15 + TSS region transcription start site region 49454
Tssr54105 5 138708541 to 138708546 5 - TSS region transcription start site region 54105
Gm38232 5 138725395 to 138726185 790 + unclassified gene predicted gene, 38232
Cpgi16867 5 138754101 to 138756572 2471 CpG island CpG island 16867
Tssr49455 5 138754417 to 138754428 11 + TSS region transcription start site region 49455
Tssr49456 5 138754459 to 138754522 63 + TSS region transcription start site region 49456
Fam20c 5 138754514 to 138810077 55563 + protein coding gene family with sequence similarity 20, member C
Tssr49457 5 138754525 to 138754607 82 + TSS region transcription start site region 49457
Tssr49458 5 138754638 to 138754652 14 + TSS region transcription start site region 49458
Tssr49459 5 138754770 to 138754790 20 + TSS region transcription start site region 49459
Tssr49460 5 138754808 to 138754819 11 + TSS region transcription start site region 49460
Tssr54106 5 138754879 to 138754910 31 - TSS region transcription start site region 54106
Tssr49461 5 138755072 to 138755090 18 + TSS region transcription start site region 49461
Tssr54107 5 138755411 to 138755432 21 - TSS region transcription start site region 54107
Tssr49462 5 138757870 to 138757884 14 + TSS region transcription start site region 49462
Tssr49463 5 138770200 to 138770208 8 + TSS region transcription start site region 49463
Tssr49464 5 138774269 to 138774285 16 + TSS region transcription start site region 49464
Tssr49465 5 138775334 to 138775370 36 + TSS region transcription start site region 49465
Tssr49466 5 138775401 to 138775412 11 + TSS region transcription start site region 49466
Tssr49467 5 138780505 to 138780512 7 + TSS region transcription start site region 49467