Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:138061903-138189265

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smok3c 5 138053194 to 138066537 13343 + protein coding gene sperm motility kinase 3C
Cpgi16852 5 138085015 to 138085674 659 CpG island CpG island 16852
Tssr49408 5 138085083 to 138085147 64 + TSS region transcription start site region 49408
Zkscan1 5 138085084 to 138107822 22738 + protein coding gene zinc finger with KRAB and SCAN domains 1
Tssr49409 5 138085173 to 138085182 9 + TSS region transcription start site region 49409
Tssr49410 5 138089283 to 138089295 12 + TSS region transcription start site region 49410
Tssr49411 5 138097649 to 138097650 1 + TSS region transcription start site region 49411
Tssr49412 5 138103735 to 138103739 4 + TSS region transcription start site region 49412
Gm43493 5 138106907 to 138107108 201 + pseudogene predicted gene 43493
Cpgi16853 5 138116785 to 138117281 496 CpG island CpG island 16853
Tssr54072 5 138116851 to 138116868 17 - TSS region transcription start site region 54072
Zscan21 5 138116903 to 138134265 17362 + protein coding gene zinc finger and SCAN domain containing 21
Tssr49413 5 138116911 to 138116986 75 + TSS region transcription start site region 49413
Zfp113 5 138139702 to 138155744 16042 - protein coding gene zinc finger protein 113
Cpgi16854 5 138155167 to 138155866 699 CpG island CpG island 16854
Tssr54073 5 138155694 to 138155740 46 - TSS region transcription start site region 54073
Cpgi16855 5 138160926 to 138161649 723 CpG island CpG island 16855
Tssr49414 5 138161083 to 138161116 33 + TSS region transcription start site region 49414
Cops6 5 138161102 to 138163984 2882 + protein coding gene COP9 signalosome subunit 6
Tssr49415 5 138161131 to 138161144 13 + TSS region transcription start site region 49415
Tssr49416 5 138161698 to 138161712 14 + TSS region transcription start site region 49416
Tssr49417 5 138162182 to 138162191 9 + TSS region transcription start site region 49417
Mcm7 5 138164589 to 138171883 7294 - protein coding gene minichromosome maintenance complex component 7
Mir25 5 138165321 to 138165404 83 - miRNA gene microRNA 25
Mirc3 5 138165321 to 138165818 497 complex/cluster/region microRNA cluster 3, including Mir25 through Mir106b
Mir93 5 138165523 to 138165610 87 - miRNA gene microRNA 93
Mir106b 5 138165737 to 138165818 81 - miRNA gene microRNA 106b
Cpgi16856 5 138170882 to 138172419 1537 CpG island CpG island 16856
Tssr1724 5 138170974 to 138170986 12 - TSS region transcription start site region 1724
Tssr54074 5 138170992 to 138171033 41 - TSS region transcription start site region 54074
Tssr54075 5 138171216 to 138171246 30 - TSS region transcription start site region 54075
Tssr54076 5 138171248 to 138171274 26 - TSS region transcription start site region 54076
Tssr49418 5 138171337 to 138171402 65 + TSS region transcription start site region 49418
Tssr54077 5 138171813 to 138171816 3 - TSS region transcription start site region 54077
Tssr54078 5 138171822 to 138171833 11 - TSS region transcription start site region 54078
Tssr54079 5 138171844 to 138171887 43 - TSS region transcription start site region 54079
Tssr49419 5 138171997 to 138172021 24 + TSS region transcription start site region 49419
Ap4m1 5 138172021 to 138180429 8408 + protein coding gene adaptor-related protein complex AP-4, mu 1
Tssr49420 5 138172110 to 138172132 22 + TSS region transcription start site region 49420
Tssr49421 5 138172141 to 138172188 47 + TSS region transcription start site region 49421
Tssr54080 5 138172358 to 138172365 7 - TSS region transcription start site region 54080
Tssr54081 5 138172383 to 138172418 35 - TSS region transcription start site region 54081
Taf6 5 138178617 to 138187446 8829 - protein coding gene TATA-box binding protein associated factor 6
Tssr49422 5 138180146 to 138180150 4 + TSS region transcription start site region 49422
Tssr54082 5 138184711 to 138184722 11 - TSS region transcription start site region 54082
Cpgi16857 5 138186938 to 138187291 353 CpG island CpG island 16857
Tssr54083 5 138187177 to 138187237 60 - TSS region transcription start site region 54083
Tssr54084 5 138187417 to 138187463 46 - TSS region transcription start site region 54084
Tssr49423 5 138187443 to 138187462 19 + TSS region transcription start site region 49423
Tssr49424 5 138187499 to 138187521 22 + TSS region transcription start site region 49424
Tssr49425 5 138187523 to 138187566 43 + TSS region transcription start site region 49425
Cnpy4 5 138187535 to 138193894 6359 + protein coding gene canopy FGF signaling regulator 4