Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:137799973-138179995

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zcwpw1 5 137787798 to 137822621 34823 + protein coding gene zinc finger, CW type with PWWP domain 1
Pilra 5 137821952 to 137836278 14326 - protein coding gene paired immunoglobin-like type 2 receptor alpha
Tssr54047 5 137827809 to 137827820 11 - TSS region transcription start site region 54047
Tssr54048 5 137827839 to 137827847 8 - TSS region transcription start site region 54048
Tssr54049 5 137831206 to 137831225 19 - TSS region transcription start site region 54049
Tssr49394 5 137831229 to 137831244 15 + TSS region transcription start site region 49394
Tssr54050 5 137831238 to 137831245 7 - TSS region transcription start site region 54050
Tssr54051 5 137831273 to 137831282 9 - TSS region transcription start site region 54051
Tssr1721 5 137831408 to 137831421 13 - TSS region transcription start site region 1721
Tssr54052 5 137836184 to 137836193 9 - TSS region transcription start site region 54052
Tssr54053 5 137836210 to 137836233 23 - TSS region transcription start site region 54053
Pilrb1 5 137852147 to 137858106 5959 - protein coding gene paired immunoglobin-like type 2 receptor beta 1
Gm36551 5 137857045 to 137860318 3273 + antisense lncRNA gene predicted gene, 36551
Tssr49395 5 137857189 to 137857200 11 + TSS region transcription start site region 49395
Tssr49396 5 137857218 to 137857240 22 + TSS region transcription start site region 49396
Tssr54054 5 137858034 to 137858054 20 - TSS region transcription start site region 54054
Pilrb2 5 137865827 to 137871815 5988 - protein coding gene paired immunoglobin-like type 2 receptor beta 2
Gm43495 5 137870754 to 137871209 455 + antisense lncRNA gene predicted gene 43495
Tssr54055 5 137871729 to 137871734 5 - TSS region transcription start site region 54055
Tssr54056 5 137871739 to 137871768 29 - TSS region transcription start site region 54056
Tssr54057 5 137871779 to 137871790 11 - TSS region transcription start site region 54057
Gm43494 5 137875235 to 137875622 387 - pseudogene predicted gene 43494
Tssr49397 5 137883100 to 137883123 23 + TSS region transcription start site region 49397
Tssr49398 5 137887920 to 137887930 10 + TSS region transcription start site region 49398
Tssr49399 5 137887962 to 137887963 1 + TSS region transcription start site region 49399
Tssr49400 5 137887994 to 137888013 19 + TSS region transcription start site region 49400
Gm3103 5 137888071 to 137888822 751 + pseudogene predicted gene 3103
Cyp3a13 5 137892933 to 137921619 28686 - protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 13
Tssr54058 5 137893623 to 137893641 18 - TSS region transcription start site region 54058
Gm15502 5 137896752 to 137896959 207 - pseudogene predicted gene 15502
Tssr54059 5 137897955 to 137897960 5 - TSS region transcription start site region 54059
Tssr54060 5 137921612 to 137921628 16 - TSS region transcription start site region 54060
Gm8099 5 137928275 to 137929016 741 + pseudogene predicted gene 8099
Tssr49401 5 137928294 to 137928307 13 + TSS region transcription start site region 49401
Tssr49402 5 137928670 to 137928684 14 + TSS region transcription start site region 49402
Gjc3 5 137953461 to 137963098 9637 - protein coding gene gap junction protein, gamma 3
D5Mit221 5 137956159 to 137956304 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 221
Tssr54061 5 137956345 to 137956356 11 - TSS region transcription start site region 54061
Tssr54062 5 137962911 to 137962931 20 - TSS region transcription start site region 54062
Tssr54063 5 137962933 to 137962938 5 - TSS region transcription start site region 54063
Tssr54064 5 137962955 to 137962967 12 - TSS region transcription start site region 54064
Tssr54065 5 137962975 to 137962984 9 - TSS region transcription start site region 54065
Tssr54066 5 137963029 to 137963040 11 - TSS region transcription start site region 54066
Tssr54067 5 137963042 to 137963056 14 - TSS region transcription start site region 54067
Tssr54068 5 137963062 to 137963073 11 - TSS region transcription start site region 54068
Tssr54069 5 137963087 to 137963109 22 - TSS region transcription start site region 54069
Tssr54070 5 137963135 to 137963138 3 - TSS region transcription start site region 54070
Tssr1722 5 137981489 to 137981499 10 + TSS region transcription start site region 1722
Tssr49403 5 137981512 to 137981556 44 + TSS region transcription start site region 49403
Azgp1 5 137981521 to 137990233 8712 + protein coding gene alpha-2-glycoprotein 1, zinc
Tssr1723 5 137981560 to 137981569 9 + TSS region transcription start site region 1723
Tssr49404 5 137985382 to 137985390 8 + TSS region transcription start site region 49404
Tssr49405 5 137989741 to 137989753 12 + TSS region transcription start site region 49405
Tssr49406 5 137989797 to 137989806 9 + TSS region transcription start site region 49406
Tssr49407 5 137989948 to 137989957 9 + TSS region transcription start site region 49407
Tssr54071 5 137989973 to 137989995 22 - TSS region transcription start site region 54071
Gm4963 5 137993047 to 137993424 377 - pseudogene predicted gene 4963
Gm29127 5 138017419 to 138017935 516 + pseudogene predicted gene 29127
Smok3a 5 138021276 to 138034665 13389 + protein coding gene sperm motility kinase 3A
Smok3b 5 138037224 to 138050633 13409 + protein coding gene sperm motility kinase 3B
Smok3c 5 138053194 to 138066537 13343 + protein coding gene sperm motility kinase 3C
Cpgi16852 5 138085015 to 138085674 659 CpG island CpG island 16852
Tssr49408 5 138085083 to 138085147 64 + TSS region transcription start site region 49408
Zkscan1 5 138085084 to 138107822 22738 + protein coding gene zinc finger with KRAB and SCAN domains 1
Tssr49409 5 138085173 to 138085182 9 + TSS region transcription start site region 49409
Tssr49410 5 138089283 to 138089295 12 + TSS region transcription start site region 49410
Tssr49411 5 138097649 to 138097650 1 + TSS region transcription start site region 49411
Tssr49412 5 138103735 to 138103739 4 + TSS region transcription start site region 49412
Gm43493 5 138106907 to 138107108 201 + pseudogene predicted gene 43493
Cpgi16853 5 138116785 to 138117281 496 CpG island CpG island 16853
Tssr54072 5 138116851 to 138116868 17 - TSS region transcription start site region 54072
Zscan21 5 138116903 to 138134265 17362 + protein coding gene zinc finger and SCAN domain containing 21
Tssr49413 5 138116911 to 138116986 75 + TSS region transcription start site region 49413
Zfp113 5 138139702 to 138155744 16042 - protein coding gene zinc finger protein 113
Cpgi16854 5 138155167 to 138155866 699 CpG island CpG island 16854
Tssr54073 5 138155694 to 138155740 46 - TSS region transcription start site region 54073
Cpgi16855 5 138160926 to 138161649 723 CpG island CpG island 16855
Tssr49414 5 138161083 to 138161116 33 + TSS region transcription start site region 49414
Cops6 5 138161102 to 138163984 2882 + protein coding gene COP9 signalosome subunit 6
Tssr49415 5 138161131 to 138161144 13 + TSS region transcription start site region 49415
Tssr49416 5 138161698 to 138161712 14 + TSS region transcription start site region 49416
Tssr49417 5 138162182 to 138162191 9 + TSS region transcription start site region 49417
Mcm7 5 138164589 to 138171883 7294 - protein coding gene minichromosome maintenance complex component 7
Mir25 5 138165321 to 138165404 83 - miRNA gene microRNA 25
Mirc3 5 138165321 to 138165818 497 complex/cluster/region microRNA cluster 3, including Mir25 through Mir106b
Mir93 5 138165523 to 138165610 87 - miRNA gene microRNA 93
Mir106b 5 138165737 to 138165818 81 - miRNA gene microRNA 106b
Cpgi16856 5 138170882 to 138172419 1537 CpG island CpG island 16856
Tssr1724 5 138170974 to 138170986 12 - TSS region transcription start site region 1724
Tssr54074 5 138170992 to 138171033 41 - TSS region transcription start site region 54074
Tssr54075 5 138171216 to 138171246 30 - TSS region transcription start site region 54075
Tssr54076 5 138171248 to 138171274 26 - TSS region transcription start site region 54076
Tssr49418 5 138171337 to 138171402 65 + TSS region transcription start site region 49418
Tssr54077 5 138171813 to 138171816 3 - TSS region transcription start site region 54077
Tssr54078 5 138171822 to 138171833 11 - TSS region transcription start site region 54078
Tssr54079 5 138171844 to 138171887 43 - TSS region transcription start site region 54079
Tssr49419 5 138171997 to 138172021 24 + TSS region transcription start site region 49419
Ap4m1 5 138172021 to 138180429 8408 + protein coding gene adaptor-related protein complex AP-4, mu 1
Tssr49420 5 138172110 to 138172132 22 + TSS region transcription start site region 49420
Tssr49421 5 138172141 to 138172188 47 + TSS region transcription start site region 49421
Tssr54080 5 138172358 to 138172365 7 - TSS region transcription start site region 54080
Tssr54081 5 138172383 to 138172418 35 - TSS region transcription start site region 54081
Taf6 5 138178617 to 138187446 8829 - protein coding gene TATA-box binding protein associated factor 6