Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:137668609-138742308

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278 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa26 5 104435822 to 138557193 34121371 QTL B.burgdorferi-associated arthritis 26
Cia14 5 113172519 to 138557193 25384674 QTL collagen induced arthritis QTL 14
Agfg2 5 137650463 to 137684726 34263 - protein coding gene ArfGAP with FG repeats 2
Tssr54022 5 137669571 to 137669575 4 - TSS region transcription start site region 54022
Cpgi16847 5 137683940 to 137685119 1179 CpG island CpG island 16847
Tssr54023 5 137684588 to 137684603 15 - TSS region transcription start site region 54023
Tssr54024 5 137684665 to 137684729 64 - TSS region transcription start site region 54024
Tssr54025 5 137684747 to 137684757 10 - TSS region transcription start site region 54025
Gm15498 5 137685154 to 137690751 5597 - lincRNA gene predicted gene 15498
D5Mit340 5 137685313 to 137685437 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 340
Tssr49365 5 137705343 to 137705390 47 + TSS region transcription start site region 49365
Tssr54026 5 137707044 to 137707055 11 - TSS region transcription start site region 54026
Tssr54027 5 137707071 to 137707082 11 - TSS region transcription start site region 54027
Gm36403 5 137707125 to 137719627 12502 + lncRNA gene predicted gene, 36403
Gm15753 5 137720354 to 137721740 1386 - pseudogene predicted gene 15753
Tssr54028 5 137720695 to 137720710 15 - TSS region transcription start site region 54028
Tssr54029 5 137720759 to 137720789 30 - TSS region transcription start site region 54029
Tssr54030 5 137720844 to 137720848 4 - TSS region transcription start site region 54030
Nyap1 5 137730882 to 137741607 10725 - protein coding gene neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1
Cpgi16848 5 137740918 to 137741997 1079 CpG island CpG island 16848
Tssr54031 5 137741046 to 137741062 16 - TSS region transcription start site region 54031
Tssr54032 5 137741109 to 137741185 76 - TSS region transcription start site region 54032
Tssr54033 5 137741359 to 137741370 11 - TSS region transcription start site region 54033
Tssr54034 5 137741415 to 137741454 39 - TSS region transcription start site region 54034
Tssr54035 5 137741601 to 137741617 16 - TSS region transcription start site region 54035
Tssr49366 5 137745751 to 137745797 46 + TSS region transcription start site region 49366
Tssr49367 5 137745953 to 137745964 11 + TSS region transcription start site region 49367
Tssr49368 5 137745967 to 137746027 60 + TSS region transcription start site region 49368
Tsc22d4 5 137745969 to 137768453 22484 + protein coding gene TSC22 domain family, member 4
Cpgi16849 5 137746007 to 137746487 480 CpG island CpG island 16849
Tssr49369 5 137746113 to 137746178 65 + TSS region transcription start site region 49369
Tssr49370 5 137746183 to 137746194 11 + TSS region transcription start site region 49370
Tssr49371 5 137746238 to 137746249 11 + TSS region transcription start site region 49371
Tssr49372 5 137746355 to 137746374 19 + TSS region transcription start site region 49372
Tssr49373 5 137746547 to 137746617 70 + TSS region transcription start site region 49373
Tssr49374 5 137746639 to 137746651 12 + TSS region transcription start site region 49374
Tssr49375 5 137746690 to 137746701 11 + TSS region transcription start site region 49375
Tssr49376 5 137746885 to 137746917 32 + TSS region transcription start site region 49376
Tssr49377 5 137746952 to 137746975 23 + TSS region transcription start site region 49377
Tssr49378 5 137747066 to 137747089 23 + TSS region transcription start site region 49378
Tssr49379 5 137747511 to 137747533 22 + TSS region transcription start site region 49379
Tssr49380 5 137747608 to 137747642 34 + TSS region transcription start site region 49380
Tssr49381 5 137747643 to 137747684 41 + TSS region transcription start site region 49381
Tssr49382 5 137747714 to 137747734 20 + TSS region transcription start site region 49382
Tssr54036 5 137747985 to 137747990 5 - TSS region transcription start site region 54036
Tssr49383 5 137748966 to 137748970 4 + TSS region transcription start site region 49383
Tssr49384 5 137758111 to 137758118 7 + TSS region transcription start site region 49384
Tssr49385 5 137758133 to 137758213 80 + TSS region transcription start site region 49385
Tssr49386 5 137758253 to 137758263 10 + TSS region transcription start site region 49386
Tssr49387 5 137761676 to 137761679 3 + TSS region transcription start site region 49387
Tssr49388 5 137761680 to 137761714 34 + TSS region transcription start site region 49388
Cpgi16850 5 137778537 to 137780035 1498 CpG island CpG island 16850
Tssr49389 5 137778871 to 137778935 64 + TSS region transcription start site region 49389
Ppp1r35 5 137778904 to 137780128 1224 + protein coding gene protein phosphatase 1, regulatory subunit 35
Tssr49390 5 137778976 to 137778988 12 + TSS region transcription start site region 49390
Mepce 5 137781906 to 137786701 4795 - protein coding gene methylphosphate capping enzyme
Cpgi16851 5 137785035 to 137788664 3629 CpG island CpG island 16851
Tssr54037 5 137786180 to 137786193 13 - TSS region transcription start site region 54037
Tssr54038 5 137786239 to 137786263 24 - TSS region transcription start site region 54038
Tssr54039 5 137786268 to 137786300 32 - TSS region transcription start site region 54039
Tssr54040 5 137786420 to 137786430 10 - TSS region transcription start site region 54040
Tssr54041 5 137786651 to 137786668 17 - TSS region transcription start site region 54041
Tssr54042 5 137786681 to 137786706 25 - TSS region transcription start site region 54042
Tssr54043 5 137787501 to 137787523 22 - TSS region transcription start site region 54043
Tssr54044 5 137787531 to 137787543 12 - TSS region transcription start site region 54044
Tssr54045 5 137787617 to 137787637 20 - TSS region transcription start site region 54045
Tssr54046 5 137787642 to 137787661 19 - TSS region transcription start site region 54046
Tssr49391 5 137787769 to 137787807 38 + TSS region transcription start site region 49391
Zcwpw1 5 137787798 to 137822621 34823 + protein coding gene zinc finger, CW type with PWWP domain 1
Tssr49392 5 137787813 to 137787843 30 + TSS region transcription start site region 49392
Tssr49393 5 137787853 to 137787871 18 + TSS region transcription start site region 49393
Pilra 5 137821952 to 137836278 14326 - protein coding gene paired immunoglobin-like type 2 receptor alpha
Tssr54047 5 137827809 to 137827820 11 - TSS region transcription start site region 54047
Tssr54048 5 137827839 to 137827847 8 - TSS region transcription start site region 54048
Tssr54049 5 137831206 to 137831225 19 - TSS region transcription start site region 54049
Tssr49394 5 137831229 to 137831244 15 + TSS region transcription start site region 49394
Tssr54050 5 137831238 to 137831245 7 - TSS region transcription start site region 54050
Tssr54051 5 137831273 to 137831282 9 - TSS region transcription start site region 54051
Tssr1721 5 137831408 to 137831421 13 - TSS region transcription start site region 1721
Tssr54052 5 137836184 to 137836193 9 - TSS region transcription start site region 54052
Tssr54053 5 137836210 to 137836233 23 - TSS region transcription start site region 54053
Pilrb1 5 137852147 to 137858106 5959 - protein coding gene paired immunoglobin-like type 2 receptor beta 1
Gm36551 5 137857045 to 137860318 3273 + antisense lncRNA gene predicted gene, 36551
Tssr49395 5 137857189 to 137857200 11 + TSS region transcription start site region 49395
Tssr49396 5 137857218 to 137857240 22 + TSS region transcription start site region 49396
Tssr54054 5 137858034 to 137858054 20 - TSS region transcription start site region 54054
Pilrb2 5 137865827 to 137871815 5988 - protein coding gene paired immunoglobin-like type 2 receptor beta 2
Gm43495 5 137870754 to 137871209 455 + antisense lncRNA gene predicted gene 43495
Tssr54055 5 137871729 to 137871734 5 - TSS region transcription start site region 54055
Tssr54056 5 137871739 to 137871768 29 - TSS region transcription start site region 54056
Tssr54057 5 137871779 to 137871790 11 - TSS region transcription start site region 54057
Gm43494 5 137875235 to 137875622 387 - pseudogene predicted gene 43494
Tssr49397 5 137883100 to 137883123 23 + TSS region transcription start site region 49397
Tssr49398 5 137887920 to 137887930 10 + TSS region transcription start site region 49398
Tssr49399 5 137887962 to 137887963 1 + TSS region transcription start site region 49399
Tssr49400 5 137887994 to 137888013 19 + TSS region transcription start site region 49400
Gm3103 5 137888071 to 137888822 751 + pseudogene predicted gene 3103
Cyp3a13 5 137892933 to 137921619 28686 - protein coding gene cytochrome P450, family 3, subfamily a, polypeptide 13
Tssr54058 5 137893623 to 137893641 18 - TSS region transcription start site region 54058
Gm15502 5 137896752 to 137896959 207 - pseudogene predicted gene 15502
Tssr54059 5 137897955 to 137897960 5 - TSS region transcription start site region 54059
Tssr54060 5 137921612 to 137921628 16 - TSS region transcription start site region 54060
Gm8099 5 137928275 to 137929016 741 + pseudogene predicted gene 8099
Tssr49401 5 137928294 to 137928307 13 + TSS region transcription start site region 49401
Tssr49402 5 137928670 to 137928684 14 + TSS region transcription start site region 49402
Gjc3 5 137953461 to 137963098 9637 - protein coding gene gap junction protein, gamma 3
D5Mit221 5 137956159 to 137956304 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 221
Tssr54061 5 137956345 to 137956356 11 - TSS region transcription start site region 54061
Tssr54062 5 137962911 to 137962931 20 - TSS region transcription start site region 54062
Tssr54063 5 137962933 to 137962938 5 - TSS region transcription start site region 54063
Tssr54064 5 137962955 to 137962967 12 - TSS region transcription start site region 54064
Tssr54065 5 137962975 to 137962984 9 - TSS region transcription start site region 54065
Tssr54066 5 137963029 to 137963040 11 - TSS region transcription start site region 54066
Tssr54067 5 137963042 to 137963056 14 - TSS region transcription start site region 54067
Tssr54068 5 137963062 to 137963073 11 - TSS region transcription start site region 54068
Tssr54069 5 137963087 to 137963109 22 - TSS region transcription start site region 54069
Tssr54070 5 137963135 to 137963138 3 - TSS region transcription start site region 54070
Tssr1722 5 137981489 to 137981499 10 + TSS region transcription start site region 1722
Tssr49403 5 137981512 to 137981556 44 + TSS region transcription start site region 49403
Azgp1 5 137981521 to 137990233 8712 + protein coding gene alpha-2-glycoprotein 1, zinc
Tssr1723 5 137981560 to 137981569 9 + TSS region transcription start site region 1723
Tssr49404 5 137985382 to 137985390 8 + TSS region transcription start site region 49404
Tssr49405 5 137989741 to 137989753 12 + TSS region transcription start site region 49405
Tssr49406 5 137989797 to 137989806 9 + TSS region transcription start site region 49406
Tssr49407 5 137989948 to 137989957 9 + TSS region transcription start site region 49407
Tssr54071 5 137989973 to 137989995 22 - TSS region transcription start site region 54071
Gm4963 5 137993047 to 137993424 377 - pseudogene predicted gene 4963
Gm29127 5 138017419 to 138017935 516 + pseudogene predicted gene 29127
Smok3a 5 138021276 to 138034665 13389 + protein coding gene sperm motility kinase 3A
Smok3b 5 138037224 to 138050633 13409 + protein coding gene sperm motility kinase 3B
Smok3c 5 138053194 to 138066537 13343 + protein coding gene sperm motility kinase 3C
Cpgi16852 5 138085015 to 138085674 659 CpG island CpG island 16852
Tssr49408 5 138085083 to 138085147 64 + TSS region transcription start site region 49408
Zkscan1 5 138085084 to 138107822 22738 + protein coding gene zinc finger with KRAB and SCAN domains 1
Tssr49409 5 138085173 to 138085182 9 + TSS region transcription start site region 49409
Tssr49410 5 138089283 to 138089295 12 + TSS region transcription start site region 49410
Tssr49411 5 138097649 to 138097650 1 + TSS region transcription start site region 49411
Tssr49412 5 138103735 to 138103739 4 + TSS region transcription start site region 49412
Gm43493 5 138106907 to 138107108 201 + pseudogene predicted gene 43493
Cpgi16853 5 138116785 to 138117281 496 CpG island CpG island 16853
Tssr54072 5 138116851 to 138116868 17 - TSS region transcription start site region 54072
Zscan21 5 138116903 to 138134265 17362 + protein coding gene zinc finger and SCAN domain containing 21
Tssr49413 5 138116911 to 138116986 75 + TSS region transcription start site region 49413
Zfp113 5 138139702 to 138155744 16042 - protein coding gene zinc finger protein 113
Cpgi16854 5 138155167 to 138155866 699 CpG island CpG island 16854
Tssr54073 5 138155694 to 138155740 46 - TSS region transcription start site region 54073
Cpgi16855 5 138160926 to 138161649 723 CpG island CpG island 16855
Tssr49414 5 138161083 to 138161116 33 + TSS region transcription start site region 49414
Cops6 5 138161102 to 138163984 2882 + protein coding gene COP9 signalosome subunit 6
Tssr49415 5 138161131 to 138161144 13 + TSS region transcription start site region 49415
Tssr49416 5 138161698 to 138161712 14 + TSS region transcription start site region 49416
Tssr49417 5 138162182 to 138162191 9 + TSS region transcription start site region 49417
Mcm7 5 138164589 to 138171883 7294 - protein coding gene minichromosome maintenance complex component 7
Mir25 5 138165321 to 138165404 83 - miRNA gene microRNA 25
Mirc3 5 138165321 to 138165818 497 complex/cluster/region microRNA cluster 3, including Mir25 through Mir106b
Mir93 5 138165523 to 138165610 87 - miRNA gene microRNA 93
Mir106b 5 138165737 to 138165818 81 - miRNA gene microRNA 106b
Cpgi16856 5 138170882 to 138172419 1537 CpG island CpG island 16856
Tssr1724 5 138170974 to 138170986 12 - TSS region transcription start site region 1724
Tssr54074 5 138170992 to 138171033 41 - TSS region transcription start site region 54074
Tssr54075 5 138171216 to 138171246 30 - TSS region transcription start site region 54075
Tssr54076 5 138171248 to 138171274 26 - TSS region transcription start site region 54076
Tssr49418 5 138171337 to 138171402 65 + TSS region transcription start site region 49418
Tssr54077 5 138171813 to 138171816 3 - TSS region transcription start site region 54077
Tssr54078 5 138171822 to 138171833 11 - TSS region transcription start site region 54078
Tssr54079 5 138171844 to 138171887 43 - TSS region transcription start site region 54079
Tssr49419 5 138171997 to 138172021 24 + TSS region transcription start site region 49419
Ap4m1 5 138172021 to 138180429 8408 + protein coding gene adaptor-related protein complex AP-4, mu 1
Tssr49420 5 138172110 to 138172132 22 + TSS region transcription start site region 49420
Tssr49421 5 138172141 to 138172188 47 + TSS region transcription start site region 49421
Tssr54080 5 138172358 to 138172365 7 - TSS region transcription start site region 54080
Tssr54081 5 138172383 to 138172418 35 - TSS region transcription start site region 54081
Taf6 5 138178617 to 138187446 8829 - protein coding gene TATA-box binding protein associated factor 6
Tssr49422 5 138180146 to 138180150 4 + TSS region transcription start site region 49422
Tssr54082 5 138184711 to 138184722 11 - TSS region transcription start site region 54082
Cpgi16857 5 138186938 to 138187291 353 CpG island CpG island 16857
Tssr54083 5 138187177 to 138187237 60 - TSS region transcription start site region 54083
Tssr54084 5 138187417 to 138187463 46 - TSS region transcription start site region 54084
Tssr49423 5 138187443 to 138187462 19 + TSS region transcription start site region 49423
Tssr49424 5 138187499 to 138187521 22 + TSS region transcription start site region 49424
Tssr49425 5 138187523 to 138187566 43 + TSS region transcription start site region 49425
Cnpy4 5 138187535 to 138193894 6359 + protein coding gene canopy FGF signaling regulator 4
Cpgi16858 5 138194181 to 138195273 1092 CpG island CpG island 16858
Tssr49426 5 138194277 to 138194326 49 + TSS region transcription start site region 49426
Mblac1 5 138194314 to 138195621 1307 + protein coding gene metallo-beta-lactamase domain containing 1
Tssr54085 5 138195545 to 138195552 7 - TSS region transcription start site region 54085
Tssr54086 5 138195633 to 138195658 25 - TSS region transcription start site region 54086
Gm454 5 138203609 to 138207308 3699 - lincRNA gene predicted gene 454
Tssr54087 5 138207269 to 138207301 32 - TSS region transcription start site region 54087
Tssr54088 5 138207302 to 138207317 15 - TSS region transcription start site region 54088
Gm43645 5 138207508 to 138207972 464 + lincRNA gene predicted gene 43645
D5Mit98 5 138218095 to 138218250 155 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 98
D5Dcr14 5 138218148 to 138218251 103 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 14
Tssr49427 5 138219733 to 138219740 7 + TSS region transcription start site region 49427
Gm22956 5 138219737 to 138219816 79 + snRNA gene predicted gene, 22956
Nxpe5 5 138225898 to 138253363 27465 + protein coding gene neurexophilin and PC-esterase domain family, member 5
Tssr54089 5 138227380 to 138227418 38 - TSS region transcription start site region 54089
Tssr49428 5 138229739 to 138229749 10 + TSS region transcription start site region 49428
Tssr49429 5 138229768 to 138229779 11 + TSS region transcription start site region 49429
Tssr49430 5 138229786 to 138229795 9 + TSS region transcription start site region 49430