Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:137239973-138739995

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455 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa26 5 104435822 to 138557193 34121371 QTL B.burgdorferi-associated arthritis 26
Cia14 5 113172519 to 138557193 25384674 QTL collagen induced arthritis QTL 14
Tssr1709 5 137263594 to 137263602 8 - TSS region transcription start site region 1709
Tssr1710 5 137263905 to 137263950 45 - TSS region transcription start site region 1710
Tssr1711 5 137264338 to 137264358 20 + TSS region transcription start site region 1711
Tssr1712 5 137264359 to 137264372 13 + TSS region transcription start site region 1712
Tssr1713 5 137264397 to 137264407 10 + TSS region transcription start site region 1713
Tssr1714 5 137265965 to 137265991 26 - TSS region transcription start site region 1714
Tssr1715 5 137268175 to 137268180 5 - TSS region transcription start site region 1715
Tssr1716 5 137268548 to 137268578 30 - TSS region transcription start site region 1716
Tssr1717 5 137268640 to 137268684 44 - TSS region transcription start site region 1717
Tssr1718 5 137268726 to 137268751 25 - TSS region transcription start site region 1718
Gm42456 5 137274093 to 137288662 14569 - lincRNA gene predicted gene 42456
Cpgi16818 5 137286732 to 137287634 902 CpG island CpG island 16818
Cpgi16819 5 137287826 to 137288786 960 CpG island CpG island 16819
Tssr49321 5 137288042 to 137288120 78 + TSS region transcription start site region 49321
Ache 5 137288215 to 137294466 6251 + protein coding gene acetylcholinesterase
Tssr49322 5 137288273 to 137288292 19 + TSS region transcription start site region 49322
Tssr53968 5 137288656 to 137288668 12 - TSS region transcription start site region 53968
Cpgi16820 5 137289106 to 137289275 169 CpG island CpG island 16820
Tssr49323 5 137289954 to 137289967 13 + TSS region transcription start site region 49323
Tssr49324 5 137289979 to 137289990 11 + TSS region transcription start site region 49324
Cpgi16821 5 137293126 to 137293527 401 CpG island CpG island 16821
Tssr49325 5 137293533 to 137293564 31 + TSS region transcription start site region 49325
Mir8116 5 137293780 to 137293876 96 + miRNA gene microRNA 8116
Cpgi16822 5 137293905 to 137295194 1289 CpG island CpG island 16822
Tssr49326 5 137294604 to 137294640 36 + TSS region transcription start site region 49326
Tssr49327 5 137294641 to 137294665 24 + TSS region transcription start site region 49327
Ufsp1 5 137294669 to 137295664 995 + protein coding gene UFM1-specific peptidase 1
Srrt 5 137295704 to 137307674 11970 - protein coding gene serrate RNA effector molecule homolog (Arabidopsis)
Mir7036 5 137296624 to 137296688 64 - miRNA gene microRNA 7036
Tssr53969 5 137300007 to 137300026 19 - TSS region transcription start site region 53969
Cpgi16823 5 137306805 to 137307900 1095 CpG island CpG island 16823
Tssr53970 5 137307521 to 137307576 55 - TSS region transcription start site region 53970
Tssr53971 5 137307633 to 137307728 95 - TSS region transcription start site region 53971
Tssr49328 5 137307748 to 137307803 55 + TSS region transcription start site region 49328
Gm43013 5 137309396 to 137309642 246 + pseudogene predicted gene 43013
Trip6 5 137309899 to 137314501 4602 - protein coding gene thyroid hormone receptor interactor 6
Tssr53972 5 137314175 to 137314212 37 - TSS region transcription start site region 53972
Slc12a9 5 137314558 to 137333597 19039 - protein coding gene solute carrier family 12 (potassium/chloride transporters), member 9
Tssr53973 5 137331069 to 137331077 8 - TSS region transcription start site region 53973
Cpgi16824 5 137333402 to 137334147 745 CpG island CpG island 16824
Tssr53974 5 137333471 to 137333482 11 - TSS region transcription start site region 53974
Tssr53975 5 137333516 to 137333557 41 - TSS region transcription start site region 53975
Tssr53976 5 137333561 to 137333575 14 - TSS region transcription start site region 53976
Tssr49329 5 137333640 to 137333659 19 + TSS region transcription start site region 49329
Gm43012 5 137337409 to 137338345 936 + unclassified gene predicted gene 43012
Cpgi16825 5 137338301 to 137338649 348 CpG island CpG island 16825
Cpgi16826 5 137339756 to 137340029 273 CpG island CpG island 16826
Cpgi16827 5 137348827 to 137349118 291 CpG island CpG island 16827
Cpgi16828 5 137349772 to 137351092 1320 CpG island CpG island 16828
Tssr49330 5 137350101 to 137350117 16 + TSS region transcription start site region 49330
Ephb4 5 137350109 to 137374522 24413 + protein coding gene Eph receptor B4
Tssr49331 5 137350130 to 137350146 16 + TSS region transcription start site region 49331
Tssr49332 5 137350162 to 137350177 15 + TSS region transcription start site region 49332
Tssr49333 5 137350196 to 137350205 9 + TSS region transcription start site region 49333
Tssr49334 5 137350371 to 137350479 108 + TSS region transcription start site region 49334
Cpgi16829 5 137357643 to 137358016 373 CpG island CpG island 16829
Zan 5 137378637 to 137477064 98427 - protein coding gene zonadhesin
Tssr53977 5 137412623 to 137412627 4 - TSS region transcription start site region 53977
D5Mit326 5 137429891 to 137430014 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 326
Rpl36-ps9 5 137432987 to 137433263 276 + pseudogene ribosomal protein L36, pseudogene 9
D5Mit373 5 137433664 to 137433787 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 373
Tssr53978 5 137472226 to 137472239 13 - TSS region transcription start site region 53978
Tssr53979 5 137477071 to 137477102 31 - TSS region transcription start site region 53979
Gm38725 5 137478036 to 137480148 2112 + lncRNA gene predicted gene, 38725
Gm36056 5 137482894 to 137485503 2609 + lncRNA gene predicted gene, 36056
Epo 5 137483020 to 137485816 2796 - protein coding gene erythropoietin
Cpgi16830 5 137485709 to 137486054 345 CpG island CpG island 16830
D5Mit46 5 137489159 to 137489392 233 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 46
Pop7 5 137501439 to 137502429 990 - protein coding gene processing of precursor 7, ribonuclease P family, (S. cerevisiae)
Cpgi16831 5 137501734 to 137503164 1430 CpG island CpG island 16831
Tssr53980 5 137502358 to 137502390 32 - TSS region transcription start site region 53980
Tssr53981 5 137502402 to 137502436 34 - TSS region transcription start site region 53981
9130604C24Rik 5 137502673 to 137503628 955 + lincRNA gene RIKEN cDNA 9130604C24 gene
Cpgi16832 5 137509772 to 137511430 1658 CpG island CpG island 16832
Gm8066 5 137510253 to 137517501 7248 + lincRNA gene predicted gene 8066
Tssr49335 5 137510406 to 137510460 54 + TSS region transcription start site region 49335
Tssr1719 5 137517459 to 137517479 20 + TSS region transcription start site region 1719
Gigyf1 5 137518548 to 137527935 9387 + protein coding gene GRB10 interacting GYF protein 1
Tssr49336 5 137527282 to 137527285 3 + TSS region transcription start site region 49336
Gnb2 5 137528129 to 137533229 5100 - protein coding gene guanine nucleotide binding protein (G protein), beta 2
Tssr53982 5 137528496 to 137528512 16 - TSS region transcription start site region 53982
Tssr53983 5 137528888 to 137528914 26 - TSS region transcription start site region 53983
Tssr53984 5 137529107 to 137529115 8 - TSS region transcription start site region 53984
Tssr53985 5 137529135 to 137529173 38 - TSS region transcription start site region 53985
Mir6418 5 137529480 to 137529594 114 - miRNA gene microRNA 6418
Tssr53986 5 137529675 to 137529692 17 - TSS region transcription start site region 53986
Tssr53987 5 137529876 to 137529892 16 - TSS region transcription start site region 53987
Cpgi16833 5 137530689 to 137531236 547 CpG island CpG island 16833
Tssr53988 5 137530741 to 137530794 53 - TSS region transcription start site region 53988
Tssr53989 5 137530990 to 137531049 59 - TSS region transcription start site region 53989
Tssr53990 5 137531064 to 137531078 14 - TSS region transcription start site region 53990
Tssr53991 5 137531140 to 137531157 17 - TSS region transcription start site region 53991
Tssr53992 5 137531204 to 137531236 32 - TSS region transcription start site region 53992
Tssr49337 5 137531284 to 137531291 7 + TSS region transcription start site region 49337
Cpgi16834 5 137531420 to 137532532 1112 CpG island CpG island 16834
Tssr53993 5 137531961 to 137531984 23 - TSS region transcription start site region 53993
Gm17112 5 137532423 to 137540718 8295 + antisense lncRNA gene predicted gene 17112
Tssr53994 5 137532773 to 137532793 20 - TSS region transcription start site region 53994
Cpgi16835 5 137532896 to 137533491 595 CpG island CpG island 16835
Tssr53995 5 137533170 to 137533198 28 - TSS region transcription start site region 53995
Tssr1720 5 137533201 to 137533206 5 - TSS region transcription start site region 1720
Tssr53996 5 137533212 to 137533290 78 - TSS region transcription start site region 53996
Tssr53997 5 137533297 to 137533311 14 - TSS region transcription start site region 53997
Cpgi16836 5 137553323 to 137553902 579 CpG island CpG island 16836
Tssr49338 5 137553513 to 137553520 7 + TSS region transcription start site region 49338
Actl6b 5 137553524 to 137569582 16058 + protein coding gene actin-like 6B
Tssr49339 5 137553530 to 137553600 70 + TSS region transcription start site region 49339
Tssr49340 5 137553601 to 137553608 7 + TSS region transcription start site region 49340
Tssr49341 5 137564533 to 137564535 2 + TSS region transcription start site region 49341
Tssr49342 5 137569824 to 137569845 21 + TSS region transcription start site region 49342
Tfr2 5 137569840 to 137587481 17641 + protein coding gene transferrin receptor 2
Tssr49343 5 137569856 to 137569879 23 + TSS region transcription start site region 49343
Tssr49344 5 137570950 to 137570990 40 + TSS region transcription start site region 49344
Tssr49345 5 137571374 to 137571395 21 + TSS region transcription start site region 49345
Cpgi16837 5 137574387 to 137575011 624 CpG island CpG island 16837
Cpgi16838 5 137583352 to 137584079 727 CpG island CpG island 16838
Cpgi16839 5 137586834 to 137587080 246 CpG island CpG island 16839
Mospd3 5 137596645 to 137601058 4413 - protein coding gene motile sperm domain containing 3
Cpgi16840 5 137596673 to 137597116 443 CpG island CpG island 16840
Tssr49346 5 137597005 to 137597015 10 + TSS region transcription start site region 49346
Tssr53998 5 137597305 to 137597318 13 - TSS region transcription start site region 53998
Tssr53999 5 137599782 to 137599819 37 - TSS region transcription start site region 53999
Cpgi16841 5 137600260 to 137601669 1409 CpG island CpG island 16841
Tssr54000 5 137600626 to 137600645 19 - TSS region transcription start site region 54000
Tssr54001 5 137600650 to 137600740 90 - TSS region transcription start site region 54001
Tssr54002 5 137600779 to 137600790 11 - TSS region transcription start site region 54002
Tssr54003 5 137601043 to 137601075 32 - TSS region transcription start site region 54003
Tssr49347 5 137601193 to 137601250 57 + TSS region transcription start site region 49347
Tssr49348 5 137601353 to 137601363 10 + TSS region transcription start site region 49348
Tssr49349 5 137601559 to 137601560 1 + TSS region transcription start site region 49349
Gm7285 5 137601593 to 137602172 579 + pseudogene predicted gene 7285
Pcolce 5 137605105 to 137611764 6659 - protein coding gene procollagen C-endopeptidase enhancer protein
Tssr54004 5 137606902 to 137606921 19 - TSS region transcription start site region 54004
Cpgi16842 5 137608873 to 137609128 255 CpG island CpG island 16842
Tssr54005 5 137608927 to 137608950 23 - TSS region transcription start site region 54005
Tssr49350 5 137610387 to 137610406 19 + TSS region transcription start site region 49350
Tssr54006 5 137610425 to 137610452 27 - TSS region transcription start site region 54006
Tssr54007 5 137610464 to 137610489 25 - TSS region transcription start site region 54007
Tssr54008 5 137610609 to 137610620 11 - TSS region transcription start site region 54008
Tssr54009 5 137610626 to 137610651 25 - TSS region transcription start site region 54009
Tssr54010 5 137611337 to 137611348 11 - TSS region transcription start site region 54010
Tssr54011 5 137611372 to 137611428 56 - TSS region transcription start site region 54011
Tssr54012 5 137611429 to 137611442 13 - TSS region transcription start site region 54012
Fbxo24 5 137612505 to 137625078 12573 - protein coding gene F-box protein 24
Gm36266 5 137612852 to 137615247 2395 + antisense lncRNA gene predicted gene, 36266
Tssr54013 5 137613759 to 137613785 26 - TSS region transcription start site region 54013
Tssr49351 5 137615610 to 137615621 11 + TSS region transcription start site region 49351
Gm16089 5 137615627 to 137615962 335 + pseudogene predicted gene 16089
Tssr54014 5 137625035 to 137625056 21 - TSS region transcription start site region 54014
Tssr54015 5 137625059 to 137625067 8 - TSS region transcription start site region 54015
Tssr54016 5 137625069 to 137625079 10 - TSS region transcription start site region 54016
Tssr49352 5 137625193 to 137625204 11 + TSS region transcription start site region 49352
Cpgi16843 5 137628577 to 137629676 1099 CpG island CpG island 16843
Tssr49353 5 137629112 to 137629123 11 + TSS region transcription start site region 49353
Lrch4 5 137629123 to 137641099 11976 + protein coding gene leucine-rich repeats and calponin homology (CH) domain containing 4
Tssr49354 5 137629149 to 137629160 11 + TSS region transcription start site region 49354
Tssr49355 5 137629169 to 137629202 33 + TSS region transcription start site region 49355
Gm20605 5 137629175 to 137642899 13724 + protein coding gene predicted gene 20605
Tssr49356 5 137630095 to 137630110 15 + TSS region transcription start site region 49356
Tssr49357 5 137630116 to 137630123 7 + TSS region transcription start site region 49357
Tssr49358 5 137630774 to 137630778 4 + TSS region transcription start site region 49358
Tssr49359 5 137630856 to 137630883 27 + TSS region transcription start site region 49359
Tssr49360 5 137633565 to 137633576 11 + TSS region transcription start site region 49360
Tssr49361 5 137636740 to 137636755 15 + TSS region transcription start site region 49361
Tssr49362 5 137636756 to 137636806 50 + TSS region transcription start site region 49362
Tssr49363 5 137638482 to 137638507 25 + TSS region transcription start site region 49363
Cpgi16844 5 137641115 to 137641491 376 CpG island CpG island 16844
Tssr49364 5 137641276 to 137641335 59 + TSS region transcription start site region 49364
Sap25 5 137641473 to 137642902 1429 + protein coding gene sin3 associated polypeptide
Irs3 5 137643032 to 137645714 2682 - protein coding gene insulin receptor substrate 3
Cpgi16845 5 137644481 to 137644653 172 CpG island CpG island 16845
Tssr54017 5 137644705 to 137644711 6 - TSS region transcription start site region 54017
Cpgi16846 5 137644998 to 137645878 880 CpG island CpG island 16846
Tssr54018 5 137645665 to 137645676 11 - TSS region transcription start site region 54018
Tssr54019 5 137645695 to 137645720 25 - TSS region transcription start site region 54019
Tssr54020 5 137645724 to 137645737 13 - TSS region transcription start site region 54020
Agfg2 5 137650463 to 137684726 34263 - protein coding gene ArfGAP with FG repeats 2
Tssr54021 5 137650563 to 137650565 2 - TSS region transcription start site region 54021
Tssr54022 5 137669571 to 137669575 4 - TSS region transcription start site region 54022
Cpgi16847 5 137683940 to 137685119 1179 CpG island CpG island 16847
Tssr54023 5 137684588 to 137684603 15 - TSS region transcription start site region 54023
Tssr54024 5 137684665 to 137684729 64 - TSS region transcription start site region 54024
Tssr54025 5 137684747 to 137684757 10 - TSS region transcription start site region 54025
Gm15498 5 137685154 to 137690751 5597 - lincRNA gene predicted gene 15498
D5Mit340 5 137685313 to 137685437 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 340
Tssr49365 5 137705343 to 137705390 47 + TSS region transcription start site region 49365
Tssr54026 5 137707044 to 137707055 11 - TSS region transcription start site region 54026
Tssr54027 5 137707071 to 137707082 11 - TSS region transcription start site region 54027
Gm36403 5 137707125 to 137719627 12502 + lncRNA gene predicted gene, 36403
Gm15753 5 137720354 to 137721740 1386 - pseudogene predicted gene 15753
Tssr54028 5 137720695 to 137720710 15 - TSS region transcription start site region 54028
Tssr54029 5 137720759 to 137720789 30 - TSS region transcription start site region 54029
Tssr54030 5 137720844 to 137720848 4 - TSS region transcription start site region 54030
Nyap1 5 137730882 to 137741607 10725 - protein coding gene neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1
Cpgi16848 5 137740918 to 137741997 1079 CpG island CpG island 16848
Tssr54031 5 137741046 to 137741062 16 - TSS region transcription start site region 54031
Tssr54032 5 137741109 to 137741185 76 - TSS region transcription start site region 54032
Tssr54033 5 137741359 to 137741370 11 - TSS region transcription start site region 54033