Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:137205130-137495146

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr1703 5 137207567 to 137207599 32 - TSS region transcription start site region 1703
Tssr1704 5 137207668 to 137207675 7 - TSS region transcription start site region 1704
Tssr1705 5 137207697 to 137207707 10 - TSS region transcription start site region 1705
Tssr1706 5 137207758 to 137207784 26 - TSS region transcription start site region 1706
Muc3a 5 137208813 to 137212389 3576 - protein coding gene mucin 3A, cell surface associated
Tssr1707 5 137210834 to 137210876 42 - TSS region transcription start site region 1707
Tssr1708 5 137211102 to 137211121 19 - TSS region transcription start site region 1708
Tssr1709 5 137263594 to 137263602 8 - TSS region transcription start site region 1709
Tssr1710 5 137263905 to 137263950 45 - TSS region transcription start site region 1710
Tssr1711 5 137264338 to 137264358 20 + TSS region transcription start site region 1711
Tssr1712 5 137264359 to 137264372 13 + TSS region transcription start site region 1712
Tssr1713 5 137264397 to 137264407 10 + TSS region transcription start site region 1713
Tssr1714 5 137265965 to 137265991 26 - TSS region transcription start site region 1714
Tssr1715 5 137268175 to 137268180 5 - TSS region transcription start site region 1715
Tssr1716 5 137268548 to 137268578 30 - TSS region transcription start site region 1716
Tssr1717 5 137268640 to 137268684 44 - TSS region transcription start site region 1717
Tssr1718 5 137268726 to 137268751 25 - TSS region transcription start site region 1718
Gm42456 5 137274093 to 137288662 14569 - lincRNA gene predicted gene 42456
Cpgi16818 5 137286732 to 137287634 902 CpG island CpG island 16818
Cpgi16819 5 137287826 to 137288786 960 CpG island CpG island 16819
Tssr49321 5 137288042 to 137288120 78 + TSS region transcription start site region 49321
Ache 5 137288215 to 137294466 6251 + protein coding gene acetylcholinesterase
Tssr49322 5 137288273 to 137288292 19 + TSS region transcription start site region 49322
Tssr53968 5 137288656 to 137288668 12 - TSS region transcription start site region 53968
Cpgi16820 5 137289106 to 137289275 169 CpG island CpG island 16820
Tssr49323 5 137289954 to 137289967 13 + TSS region transcription start site region 49323
Tssr49324 5 137289979 to 137289990 11 + TSS region transcription start site region 49324
Cpgi16821 5 137293126 to 137293527 401 CpG island CpG island 16821
Tssr49325 5 137293533 to 137293564 31 + TSS region transcription start site region 49325
Mir8116 5 137293780 to 137293876 96 + miRNA gene microRNA 8116
Cpgi16822 5 137293905 to 137295194 1289 CpG island CpG island 16822
Tssr49326 5 137294604 to 137294640 36 + TSS region transcription start site region 49326
Tssr49327 5 137294641 to 137294665 24 + TSS region transcription start site region 49327
Ufsp1 5 137294669 to 137295664 995 + protein coding gene UFM1-specific peptidase 1
Srrt 5 137295704 to 137307674 11970 - protein coding gene serrate RNA effector molecule homolog (Arabidopsis)
Mir7036 5 137296624 to 137296688 64 - miRNA gene microRNA 7036
Tssr53969 5 137300007 to 137300026 19 - TSS region transcription start site region 53969
Cpgi16823 5 137306805 to 137307900 1095 CpG island CpG island 16823
Tssr53970 5 137307521 to 137307576 55 - TSS region transcription start site region 53970
Tssr53971 5 137307633 to 137307728 95 - TSS region transcription start site region 53971
Tssr49328 5 137307748 to 137307803 55 + TSS region transcription start site region 49328
Gm43013 5 137309396 to 137309642 246 + pseudogene predicted gene 43013
Trip6 5 137309899 to 137314501 4602 - protein coding gene thyroid hormone receptor interactor 6
Tssr53972 5 137314175 to 137314212 37 - TSS region transcription start site region 53972
Slc12a9 5 137314558 to 137333597 19039 - protein coding gene solute carrier family 12 (potassium/chloride transporters), member 9
Tssr53973 5 137331069 to 137331077 8 - TSS region transcription start site region 53973
Cpgi16824 5 137333402 to 137334147 745 CpG island CpG island 16824
Tssr53974 5 137333471 to 137333482 11 - TSS region transcription start site region 53974
Tssr53975 5 137333516 to 137333557 41 - TSS region transcription start site region 53975
Tssr53976 5 137333561 to 137333575 14 - TSS region transcription start site region 53976
Tssr49329 5 137333640 to 137333659 19 + TSS region transcription start site region 49329
Gm43012 5 137337409 to 137338345 936 + unclassified gene predicted gene 43012
Cpgi16825 5 137338301 to 137338649 348 CpG island CpG island 16825
Cpgi16826 5 137339756 to 137340029 273 CpG island CpG island 16826
Cpgi16827 5 137348827 to 137349118 291 CpG island CpG island 16827
Cpgi16828 5 137349772 to 137351092 1320 CpG island CpG island 16828
Tssr49330 5 137350101 to 137350117 16 + TSS region transcription start site region 49330
Ephb4 5 137350109 to 137374522 24413 + protein coding gene Eph receptor B4
Tssr49331 5 137350130 to 137350146 16 + TSS region transcription start site region 49331
Tssr49332 5 137350162 to 137350177 15 + TSS region transcription start site region 49332
Tssr49333 5 137350196 to 137350205 9 + TSS region transcription start site region 49333
Tssr49334 5 137350371 to 137350479 108 + TSS region transcription start site region 49334
Cpgi16829 5 137357643 to 137358016 373 CpG island CpG island 16829
Zan 5 137378637 to 137477064 98427 - protein coding gene zonadhesin
Tssr53977 5 137412623 to 137412627 4 - TSS region transcription start site region 53977
D5Mit326 5 137429891 to 137430014 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 326
Rpl36-ps9 5 137432987 to 137433263 276 + pseudogene ribosomal protein L36, pseudogene 9
D5Mit373 5 137433664 to 137433787 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 373
Tssr53978 5 137472226 to 137472239 13 - TSS region transcription start site region 53978
Tssr53979 5 137477071 to 137477102 31 - TSS region transcription start site region 53979
Gm38725 5 137478036 to 137480148 2112 + lncRNA gene predicted gene, 38725
Gm36056 5 137482894 to 137485503 2609 + lncRNA gene predicted gene, 36056
Epo 5 137483020 to 137485816 2796 - protein coding gene erythropoietin
Cpgi16830 5 137485709 to 137486054 345 CpG island CpG island 16830
D5Mit46 5 137489159 to 137489392 233 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 46