Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:137108966-138388970

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543 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr53902 5 137109086 to 137109097 11 - TSS region transcription start site region 53902
Tssr53903 5 137109104 to 137109123 19 - TSS region transcription start site region 53903
Tssr53904 5 137109204 to 137109213 9 - TSS region transcription start site region 53904
Cpgi16814 5 137110127 to 137110594 467 CpG island CpG island 16814
Trim56 5 137111286 to 137116466 5180 - protein coding gene tripartite motif-containing 56
Tssr53905 5 137112351 to 137112360 9 - TSS region transcription start site region 53905
Tssr53906 5 137116177 to 137116219 42 - TSS region transcription start site region 53906
Tssr53907 5 137116221 to 137116241 20 - TSS region transcription start site region 53907
Tssr53908 5 137116249 to 137116271 22 - TSS region transcription start site region 53908
Tssr53909 5 137116413 to 137116462 49 - TSS region transcription start site region 53909
Cpgi16815 5 137126302 to 137126531 229 CpG island CpG island 16815
Muc3 5 137134922 to 137149322 14400 - protein coding gene mucin 3, intestinal
Cpgi16816 5 137138007 to 137138347 340 CpG island CpG island 16816
Tssr53910 5 137138260 to 137138270 10 - TSS region transcription start site region 53910
Tssr53911 5 137138308 to 137138320 12 - TSS region transcription start site region 53911
Tssr53912 5 137139088 to 137139100 12 - TSS region transcription start site region 53912
Tssr53913 5 137139102 to 137139105 3 - TSS region transcription start site region 53913
Tssr53914 5 137139108 to 137139117 9 - TSS region transcription start site region 53914
Tssr53915 5 137139121 to 137139140 19 - TSS region transcription start site region 53915
Tssr53916 5 137144012 to 137144022 10 - TSS region transcription start site region 53916
Tssr53917 5 137146696 to 137146706 10 - TSS region transcription start site region 53917
Tssr53918 5 137146758 to 137146766 8 - TSS region transcription start site region 53918
Tssr1677 5 137149259 to 137149268 9 - TSS region transcription start site region 1677
Tssr53919 5 137149638 to 137149648 10 - TSS region transcription start site region 53919
Tssr53920 5 137149654 to 137149683 29 - TSS region transcription start site region 53920
Tssr49309 5 137149778 to 137149801 23 + TSS region transcription start site region 49309
Tssr53921 5 137149809 to 137149841 32 - TSS region transcription start site region 53921
Tssr53922 5 137149850 to 137149857 7 - TSS region transcription start site region 53922
Tssr53923 5 137149891 to 137149899 8 - TSS region transcription start site region 53923
Tssr53924 5 137149905 to 137149918 13 - TSS region transcription start site region 53924
Tssr53925 5 137149943 to 137149950 7 - TSS region transcription start site region 53925
Tssr53926 5 137149974 to 137149984 10 - TSS region transcription start site region 53926
Tssr53927 5 137150123 to 137150133 10 - TSS region transcription start site region 53927
Tssr49310 5 137150138 to 137150143 5 + TSS region transcription start site region 49310
Tssr53928 5 137150141 to 137150146 5 - TSS region transcription start site region 53928
Tssr49311 5 137150152 to 137150167 15 + TSS region transcription start site region 49311
Tssr53929 5 137150178 to 137150186 8 - TSS region transcription start site region 53929
Tssr53930 5 137150243 to 137150257 14 - TSS region transcription start site region 53930
Tssr53931 5 137150268 to 137150275 7 - TSS region transcription start site region 53931
Tssr53932 5 137150284 to 137150293 9 - TSS region transcription start site region 53932
Tssr53933 5 137150322 to 137150332 10 - TSS region transcription start site region 53933
Tssr53934 5 137150354 to 137150365 11 - TSS region transcription start site region 53934
Tssr53935 5 137150405 to 137150418 13 - TSS region transcription start site region 53935
Tssr53936 5 137150426 to 137150441 15 - TSS region transcription start site region 53936
Tssr1678 5 137150484 to 137150493 9 - TSS region transcription start site region 1678
Tssr53937 5 137150516 to 137150526 10 - TSS region transcription start site region 53937
Tssr49312 5 137150532 to 137150558 26 + TSS region transcription start site region 49312
Tssr53938 5 137150552 to 137150567 15 - TSS region transcription start site region 53938
Tssr53939 5 137150606 to 137150616 10 - TSS region transcription start site region 53939
Tssr49313 5 137150780 to 137150796 16 + TSS region transcription start site region 49313
Tssr53940 5 137150782 to 137150817 35 - TSS region transcription start site region 53940
Tssr53941 5 137150822 to 137150836 14 - TSS region transcription start site region 53941
Tssr53942 5 137150881 to 137150887 6 - TSS region transcription start site region 53942
Tssr53943 5 137151046 to 137151051 5 - TSS region transcription start site region 53943
Tssr49314 5 137151051 to 137151062 11 + TSS region transcription start site region 49314
Tssr49315 5 137151067 to 137151092 25 + TSS region transcription start site region 49315
Tssr53944 5 137151095 to 137151103 8 - TSS region transcription start site region 53944
Tssr53945 5 137151105 to 137151122 17 - TSS region transcription start site region 53945
Tssr53946 5 137151126 to 137151137 11 - TSS region transcription start site region 53946
Tssr53947 5 137151234 to 137151248 14 - TSS region transcription start site region 53947
Tssr1679 5 137151427 to 137151437 10 - TSS region transcription start site region 1679
Tssr1680 5 137151447 to 137151464 17 + TSS region transcription start site region 1680
Tssr1681 5 137151470 to 137151479 9 - TSS region transcription start site region 1681
Tssr1682 5 137151487 to 137151496 9 - TSS region transcription start site region 1682
Tssr1683 5 137151576 to 137151586 10 - TSS region transcription start site region 1683
Tssr1684 5 137151592 to 137151605 13 - TSS region transcription start site region 1684
Tssr1685 5 137151606 to 137151614 8 + TSS region transcription start site region 1685
Tssr1686 5 137151633 to 137151638 5 - TSS region transcription start site region 1686
Tssr1687 5 137151684 to 137151693 9 - TSS region transcription start site region 1687
Tssr1688 5 137151708 to 137151728 20 - TSS region transcription start site region 1688
Tssr1689 5 137151727 to 137151757 30 + TSS region transcription start site region 1689
Tssr1690 5 137151894 to 137151902 8 + TSS region transcription start site region 1690
Tssr1691 5 137151898 to 137151908 10 - TSS region transcription start site region 1691
Tssr49316 5 137151983 to 137152002 19 + TSS region transcription start site region 49316
Tssr1692 5 137152062 to 137152075 13 - TSS region transcription start site region 1692
Tssr53948 5 137152130 to 137152147 17 - TSS region transcription start site region 53948
Tssr53949 5 137152171 to 137152180 9 - TSS region transcription start site region 53949
Tssr1693 5 137152204 to 137152226 22 + TSS region transcription start site region 1693
Tssr1694 5 137152242 to 137152273 31 - TSS region transcription start site region 1694
Tssr49317 5 137152253 to 137152293 40 + TSS region transcription start site region 49317
Tssr53950 5 137152293 to 137152333 40 - TSS region transcription start site region 53950
Tssr1695 5 137152361 to 137152416 55 + TSS region transcription start site region 1695
Tssr53951 5 137152405 to 137152414 9 - TSS region transcription start site region 53951
Tssr1696 5 137152418 to 137152429 11 + TSS region transcription start site region 1696
Tssr53952 5 137152419 to 137152486 67 - TSS region transcription start site region 53952
Tssr49318 5 137152435 to 137152443 8 + TSS region transcription start site region 49318
Tssr53953 5 137152509 to 137152516 7 - TSS region transcription start site region 53953
Tssr1697 5 137152698 to 137152701 3 - TSS region transcription start site region 1697
Tssr53954 5 137152725 to 137152795 70 - TSS region transcription start site region 53954
Tssr53955 5 137152801 to 137152811 10 - TSS region transcription start site region 53955
Tssr53956 5 137152819 to 137152830 11 - TSS region transcription start site region 53956
Tssr53957 5 137152836 to 137152847 11 - TSS region transcription start site region 53957
Tssr49319 5 137152849 to 137152865 16 + TSS region transcription start site region 49319
Tssr53958 5 137152862 to 137152902 40 - TSS region transcription start site region 53958
Tssr49320 5 137152867 to 137152877 10 + TSS region transcription start site region 49320
Tssr53959 5 137152905 to 137152915 10 - TSS region transcription start site region 53959
Tssr53960 5 137152952 to 137152981 29 - TSS region transcription start site region 53960
Tssr53961 5 137153069 to 137153080 11 - TSS region transcription start site region 53961
Tssr53962 5 137153089 to 137153098 9 - TSS region transcription start site region 53962
Tssr53963 5 137153124 to 137153137 13 - TSS region transcription start site region 53963
Tssr53964 5 137153167 to 137153177 10 - TSS region transcription start site region 53964
Tssr53965 5 137153193 to 137153202 9 - TSS region transcription start site region 53965
Gm3054 5 137154029 to 137166070 12041 - lincRNA gene predicted gene 3054
Tssr53966 5 137154061 to 137154071 10 - TSS region transcription start site region 53966
Tssr53967 5 137154087 to 137154104 17 - TSS region transcription start site region 53967
Tssr1698 5 137166030 to 137166052 22 - TSS region transcription start site region 1698
Tssr1699 5 137166164 to 137166181 17 - TSS region transcription start site region 1699
Gm40348 5 137166450 to 137172662 6212 + lincRNA gene predicted gene, 40348
Gm31160 5 137166892 to 137178048 11156 - protein coding gene predicted gene, 31160
D5Mit167 5 137176380 to 137176499 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 167
Gm40349 5 137178295 to 137189819 11524 - protein coding gene predicted gene, 40349
Tssr1700 5 137180059 to 137180070 11 - TSS region transcription start site region 1700
Gm20768 5 137186592 to 137187885 1293 - pseudogene predicted gene, 20768
Tssr1701 5 137187806 to 137187834 28 - TSS region transcription start site region 1701
Tssr1702 5 137187944 to 137187964 20 - TSS region transcription start site region 1702
Tssr1703 5 137207567 to 137207599 32 - TSS region transcription start site region 1703
Tssr1704 5 137207668 to 137207675 7 - TSS region transcription start site region 1704
Tssr1705 5 137207697 to 137207707 10 - TSS region transcription start site region 1705
Tssr1706 5 137207758 to 137207784 26 - TSS region transcription start site region 1706
Muc3a 5 137208813 to 137212389 3576 - protein coding gene mucin 3A, cell surface associated
Tssr1707 5 137210834 to 137210876 42 - TSS region transcription start site region 1707
Tssr1708 5 137211102 to 137211121 19 - TSS region transcription start site region 1708
Tssr1709 5 137263594 to 137263602 8 - TSS region transcription start site region 1709
Tssr1710 5 137263905 to 137263950 45 - TSS region transcription start site region 1710
Tssr1711 5 137264338 to 137264358 20 + TSS region transcription start site region 1711
Tssr1712 5 137264359 to 137264372 13 + TSS region transcription start site region 1712
Tssr1713 5 137264397 to 137264407 10 + TSS region transcription start site region 1713
Tssr1714 5 137265965 to 137265991 26 - TSS region transcription start site region 1714
Tssr1715 5 137268175 to 137268180 5 - TSS region transcription start site region 1715
Tssr1716 5 137268548 to 137268578 30 - TSS region transcription start site region 1716
Tssr1717 5 137268640 to 137268684 44 - TSS region transcription start site region 1717
Tssr1718 5 137268726 to 137268751 25 - TSS region transcription start site region 1718
Gm42456 5 137274093 to 137288662 14569 - lincRNA gene predicted gene 42456
Cpgi16818 5 137286732 to 137287634 902 CpG island CpG island 16818
Cpgi16819 5 137287826 to 137288786 960 CpG island CpG island 16819
Tssr49321 5 137288042 to 137288120 78 + TSS region transcription start site region 49321
Ache 5 137288215 to 137294466 6251 + protein coding gene acetylcholinesterase
Tssr49322 5 137288273 to 137288292 19 + TSS region transcription start site region 49322
Tssr53968 5 137288656 to 137288668 12 - TSS region transcription start site region 53968
Cpgi16820 5 137289106 to 137289275 169 CpG island CpG island 16820
Tssr49323 5 137289954 to 137289967 13 + TSS region transcription start site region 49323
Tssr49324 5 137289979 to 137289990 11 + TSS region transcription start site region 49324
Cpgi16821 5 137293126 to 137293527 401 CpG island CpG island 16821
Tssr49325 5 137293533 to 137293564 31 + TSS region transcription start site region 49325
Mir8116 5 137293780 to 137293876 96 + miRNA gene microRNA 8116
Cpgi16822 5 137293905 to 137295194 1289 CpG island CpG island 16822
Tssr49326 5 137294604 to 137294640 36 + TSS region transcription start site region 49326
Tssr49327 5 137294641 to 137294665 24 + TSS region transcription start site region 49327
Ufsp1 5 137294669 to 137295664 995 + protein coding gene UFM1-specific peptidase 1
Srrt 5 137295704 to 137307674 11970 - protein coding gene serrate RNA effector molecule homolog (Arabidopsis)
Mir7036 5 137296624 to 137296688 64 - miRNA gene microRNA 7036
Tssr53969 5 137300007 to 137300026 19 - TSS region transcription start site region 53969
Cpgi16823 5 137306805 to 137307900 1095 CpG island CpG island 16823
Tssr53970 5 137307521 to 137307576 55 - TSS region transcription start site region 53970
Tssr53971 5 137307633 to 137307728 95 - TSS region transcription start site region 53971
Tssr49328 5 137307748 to 137307803 55 + TSS region transcription start site region 49328
Gm43013 5 137309396 to 137309642 246 + pseudogene predicted gene 43013
Trip6 5 137309899 to 137314501 4602 - protein coding gene thyroid hormone receptor interactor 6
Tssr53972 5 137314175 to 137314212 37 - TSS region transcription start site region 53972
Slc12a9 5 137314558 to 137333597 19039 - protein coding gene solute carrier family 12 (potassium/chloride transporters), member 9
Tssr53973 5 137331069 to 137331077 8 - TSS region transcription start site region 53973
Cpgi16824 5 137333402 to 137334147 745 CpG island CpG island 16824
Tssr53974 5 137333471 to 137333482 11 - TSS region transcription start site region 53974
Tssr53975 5 137333516 to 137333557 41 - TSS region transcription start site region 53975
Tssr53976 5 137333561 to 137333575 14 - TSS region transcription start site region 53976
Tssr49329 5 137333640 to 137333659 19 + TSS region transcription start site region 49329
Gm43012 5 137337409 to 137338345 936 + unclassified gene predicted gene 43012
Cpgi16825 5 137338301 to 137338649 348 CpG island CpG island 16825
Cpgi16826 5 137339756 to 137340029 273 CpG island CpG island 16826
Cpgi16827 5 137348827 to 137349118 291 CpG island CpG island 16827
Cpgi16828 5 137349772 to 137351092 1320 CpG island CpG island 16828
Tssr49330 5 137350101 to 137350117 16 + TSS region transcription start site region 49330
Ephb4 5 137350109 to 137374522 24413 + protein coding gene Eph receptor B4
Tssr49331 5 137350130 to 137350146 16 + TSS region transcription start site region 49331
Tssr49332 5 137350162 to 137350177 15 + TSS region transcription start site region 49332
Tssr49333 5 137350196 to 137350205 9 + TSS region transcription start site region 49333
Tssr49334 5 137350371 to 137350479 108 + TSS region transcription start site region 49334
Cpgi16829 5 137357643 to 137358016 373 CpG island CpG island 16829
Zan 5 137378637 to 137477064 98427 - protein coding gene zonadhesin
Tssr53977 5 137412623 to 137412627 4 - TSS region transcription start site region 53977
D5Mit326 5 137429891 to 137430014 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 326
Rpl36-ps9 5 137432987 to 137433263 276 + pseudogene ribosomal protein L36, pseudogene 9
D5Mit373 5 137433664 to 137433787 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 373
Tssr53978 5 137472226 to 137472239 13 - TSS region transcription start site region 53978
Tssr53979 5 137477071 to 137477102 31 - TSS region transcription start site region 53979
Gm38725 5 137478036 to 137480148 2112 + lncRNA gene predicted gene, 38725
Gm36056 5 137482894 to 137485503 2609 + lncRNA gene predicted gene, 36056
Epo 5 137483020 to 137485816 2796 - protein coding gene erythropoietin
Cpgi16830 5 137485709 to 137486054 345 CpG island CpG island 16830
D5Mit46 5 137489159 to 137489392 233 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 46
Pop7 5 137501439 to 137502429 990 - protein coding gene processing of precursor 7, ribonuclease P family, (S. cerevisiae)
Cpgi16831 5 137501734 to 137503164 1430 CpG island CpG island 16831
Tssr53980 5 137502358 to 137502390 32 - TSS region transcription start site region 53980
Tssr53981 5 137502402 to 137502436 34 - TSS region transcription start site region 53981
9130604C24Rik 5 137502673 to 137503628 955 + lincRNA gene RIKEN cDNA 9130604C24 gene
Cpgi16832 5 137509772 to 137511430 1658 CpG island CpG island 16832
Gm8066 5 137510253 to 137517501 7248 + lincRNA gene predicted gene 8066
Tssr49335 5 137510406 to 137510460 54 + TSS region transcription start site region 49335
Tssr1719 5 137517459 to 137517479 20 + TSS region transcription start site region 1719
Gigyf1 5 137518548 to 137527935 9387 + protein coding gene GRB10 interacting GYF protein 1