Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:136940668-137120692

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16806 5 136952885 to 136953335 450 CpG island CpG island 16806
Tssr49285 5 136953246 to 136953325 79 + TSS region transcription start site region 49285
Fis1 5 136953275 to 136966234 12959 + protein coding gene fission, mitochondrial 1
Tssr49286 5 136953689 to 136953693 4 + TSS region transcription start site region 49286
Tssr53877 5 136956699 to 136956709 10 - TSS region transcription start site region 53877
Cpgi16807 5 136962017 to 136962516 499 CpG island CpG island 16807
Tssr49287 5 136962081 to 136962129 48 + TSS region transcription start site region 49287
Tssr49288 5 136967815 to 136967826 11 + TSS region transcription start site region 49288
Tssr49289 5 136967827 to 136967840 13 + TSS region transcription start site region 49289
Tssr49290 5 136967859 to 136967875 16 + TSS region transcription start site region 49290
Cldn15 5 136967869 to 136975845 7976 + protein coding gene claudin 15
Tssr49291 5 136967896 to 136967907 11 + TSS region transcription start site region 49291
Tssr49292 5 136967909 to 136967924 15 + TSS region transcription start site region 49292
Tssr49293 5 136967930 to 136967941 11 + TSS region transcription start site region 49293
Tssr49294 5 136973911 to 136973929 18 + TSS region transcription start site region 49294
Tssr49295 5 136978076 to 136978078 2 + TSS region transcription start site region 49295
Znhit1 5 136982194 to 136987959 5765 - protein coding gene zinc finger, HIT domain containing 1
Cpgi16808 5 136986662 to 136988170 1508 CpG island CpG island 16808
Tssr53878 5 136986836 to 136986878 42 - TSS region transcription start site region 53878
Plod3 5 136987019 to 136996646 9627 + protein coding gene procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
Tssr49296 5 136987357 to 136987383 26 + TSS region transcription start site region 49296
Tssr49297 5 136987388 to 136987414 26 + TSS region transcription start site region 49297
Tssr49298 5 136987417 to 136987430 13 + TSS region transcription start site region 49298
Tssr49299 5 136987443 to 136987459 16 + TSS region transcription start site region 49299
Tssr49300 5 136987472 to 136987482 10 + TSS region transcription start site region 49300
Tssr53879 5 136987501 to 136987569 68 - TSS region transcription start site region 53879
Tssr49301 5 136987584 to 136987642 58 + TSS region transcription start site region 49301
Tssr49302 5 136987657 to 136987668 11 + TSS region transcription start site region 49302
Tssr53880 5 136987681 to 136987696 15 - TSS region transcription start site region 53880
Tssr53881 5 136987701 to 136987714 13 - TSS region transcription start site region 53881
Tssr53882 5 136987757 to 136987768 11 - TSS region transcription start site region 53882
Tssr53883 5 136987784 to 136987801 17 - TSS region transcription start site region 53883
Tssr53884 5 136987818 to 136987829 11 - TSS region transcription start site region 53884
Tssr53885 5 136987856 to 136987866 10 - TSS region transcription start site region 53885
Mir702 5 136991433 to 136991541 108 + miRNA gene microRNA 702
Gm7284 5 136997962 to 136999452 1490 + pseudogene predicted gene 7284
Gm26989 5 137002002 to 137005547 3545 + pseudogene predicted gene, 26989
D5Mit97 5 137003596 to 137003722 126 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 97
Cpgi16809 5 137025135 to 137025603 468 CpG island CpG island 16809
Tssr49303 5 137025315 to 137025338 23 + TSS region transcription start site region 49303
Vgf 5 137026392 to 137033351 6959 + protein coding gene VGF nerve growth factor inducible
Cpgi16810 5 137028643 to 137029139 496 CpG island CpG island 16810
Cpgi16811 5 137029571 to 137033131 3560 CpG island CpG island 16811
Tssr49304 5 137030275 to 137030290 15 + TSS region transcription start site region 49304
Tssr49305 5 137030668 to 137030692 24 + TSS region transcription start site region 49305
Tssr53886 5 137032410 to 137032442 32 - TSS region transcription start site region 53886
Ap1s1 5 137034993 to 137046060 11067 - protein coding gene adaptor protein complex AP-1, sigma 1
Cpgi16812 5 137045576 to 137046382 806 CpG island CpG island 16812
Tssr53887 5 137046026 to 137046085 59 - TSS region transcription start site region 53887
Tssr49306 5 137046142 to 137046178 36 + TSS region transcription start site region 49306
D5Mit168 5 137058375 to 137058524 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 168
Serpine1 5 137061504 to 137072268 10764 - protein coding gene serine (or cysteine) peptidase inhibitor, clade E, member 1
Tssr53888 5 137061926 to 137061930 4 - TSS region transcription start site region 53888
Tssr53889 5 137062049 to 137062065 16 - TSS region transcription start site region 53889
Tssr53890 5 137062652 to 137062662 10 - TSS region transcription start site region 53890
Tssr53891 5 137062985 to 137063005 20 - TSS region transcription start site region 53891
Tssr53892 5 137063059 to 137063082 23 - TSS region transcription start site region 53892
Tssr53893 5 137066591 to 137066596 5 - TSS region transcription start site region 53893
Tssr53894 5 137066960 to 137066971 11 - TSS region transcription start site region 53894
Tssr49307 5 137066968 to 137066994 26 + TSS region transcription start site region 49307
Tssr53895 5 137067011 to 137067028 17 - TSS region transcription start site region 53895
Tssr53896 5 137067882 to 137067894 12 - TSS region transcription start site region 53896
Tssr53897 5 137069420 to 137069444 24 - TSS region transcription start site region 53897
Tssr53898 5 137071128 to 137071137 9 - TSS region transcription start site region 53898
Tssr53899 5 137071232 to 137071249 17 - TSS region transcription start site region 53899
Tssr53900 5 137072261 to 137072277 16 - TSS region transcription start site region 53900
Cpgi16813 5 137103170 to 137103516 346 CpG island CpG island 16813
Tssr49308 5 137103205 to 137103216 11 + TSS region transcription start site region 49308
Tssr53901 5 137108914 to 137108943 29 - TSS region transcription start site region 53901
Tssr53902 5 137109086 to 137109097 11 - TSS region transcription start site region 53902
Tssr53903 5 137109104 to 137109123 19 - TSS region transcription start site region 53903
Tssr53904 5 137109204 to 137109213 9 - TSS region transcription start site region 53904
Cpgi16814 5 137110127 to 137110594 467 CpG island CpG island 16814
Trim56 5 137111286 to 137116466 5180 - protein coding gene tripartite motif-containing 56
Tssr53905 5 137112351 to 137112360 9 - TSS region transcription start site region 53905
Tssr53906 5 137116177 to 137116219 42 - TSS region transcription start site region 53906
Tssr53907 5 137116221 to 137116241 20 - TSS region transcription start site region 53907
Tssr53908 5 137116249 to 137116271 22 - TSS region transcription start site region 53908
Tssr53909 5 137116413 to 137116462 49 - TSS region transcription start site region 53909