Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:136900322-137400332

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261 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16804 5 136908012 to 136908383 371 CpG island CpG island 16804
Tssr49276 5 136908130 to 136908174 44 + TSS region transcription start site region 49276
Ift22 5 136908150 to 136914509 6359 + protein coding gene intraflagellar transport 22
Tssr49277 5 136908181 to 136908202 21 + TSS region transcription start site region 49277
Tssr49278 5 136908204 to 136908226 22 + TSS region transcription start site region 49278
Tssr49279 5 136908229 to 136908232 3 + TSS region transcription start site region 49279
Cpgi16805 5 136918934 to 136919464 530 CpG island CpG island 16805
Tssr49280 5 136919137 to 136919188 51 + TSS region transcription start site region 49280
4933404O12Rik 5 136919146 to 136937109 17963 + lincRNA gene RIKEN cDNA 4933404O12 gene
Tssr49281 5 136919227 to 136919238 11 + TSS region transcription start site region 49281
Tssr49282 5 136919338 to 136919381 43 + TSS region transcription start site region 49282
Tssr49283 5 136919594 to 136919623 29 + TSS region transcription start site region 49283
Tssr49284 5 136932938 to 136932958 20 + TSS region transcription start site region 49284
Cpgi16806 5 136952885 to 136953335 450 CpG island CpG island 16806
Tssr49285 5 136953246 to 136953325 79 + TSS region transcription start site region 49285
Fis1 5 136953275 to 136966234 12959 + protein coding gene fission, mitochondrial 1
Tssr49286 5 136953689 to 136953693 4 + TSS region transcription start site region 49286
Tssr53877 5 136956699 to 136956709 10 - TSS region transcription start site region 53877
Cpgi16807 5 136962017 to 136962516 499 CpG island CpG island 16807
Tssr49287 5 136962081 to 136962129 48 + TSS region transcription start site region 49287
Tssr49288 5 136967815 to 136967826 11 + TSS region transcription start site region 49288
Tssr49289 5 136967827 to 136967840 13 + TSS region transcription start site region 49289
Tssr49290 5 136967859 to 136967875 16 + TSS region transcription start site region 49290
Cldn15 5 136967869 to 136975845 7976 + protein coding gene claudin 15
Tssr49291 5 136967896 to 136967907 11 + TSS region transcription start site region 49291
Tssr49292 5 136967909 to 136967924 15 + TSS region transcription start site region 49292
Tssr49293 5 136967930 to 136967941 11 + TSS region transcription start site region 49293
Tssr49294 5 136973911 to 136973929 18 + TSS region transcription start site region 49294
Tssr49295 5 136978076 to 136978078 2 + TSS region transcription start site region 49295
Znhit1 5 136982194 to 136987959 5765 - protein coding gene zinc finger, HIT domain containing 1
Cpgi16808 5 136986662 to 136988170 1508 CpG island CpG island 16808
Tssr53878 5 136986836 to 136986878 42 - TSS region transcription start site region 53878
Plod3 5 136987019 to 136996646 9627 + protein coding gene procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
Tssr49296 5 136987357 to 136987383 26 + TSS region transcription start site region 49296
Tssr49297 5 136987388 to 136987414 26 + TSS region transcription start site region 49297
Tssr49298 5 136987417 to 136987430 13 + TSS region transcription start site region 49298
Tssr49299 5 136987443 to 136987459 16 + TSS region transcription start site region 49299
Tssr49300 5 136987472 to 136987482 10 + TSS region transcription start site region 49300
Tssr53879 5 136987501 to 136987569 68 - TSS region transcription start site region 53879
Tssr49301 5 136987584 to 136987642 58 + TSS region transcription start site region 49301
Tssr49302 5 136987657 to 136987668 11 + TSS region transcription start site region 49302
Tssr53880 5 136987681 to 136987696 15 - TSS region transcription start site region 53880
Tssr53881 5 136987701 to 136987714 13 - TSS region transcription start site region 53881
Tssr53882 5 136987757 to 136987768 11 - TSS region transcription start site region 53882
Tssr53883 5 136987784 to 136987801 17 - TSS region transcription start site region 53883
Tssr53884 5 136987818 to 136987829 11 - TSS region transcription start site region 53884
Tssr53885 5 136987856 to 136987866 10 - TSS region transcription start site region 53885
Mir702 5 136991433 to 136991541 108 + miRNA gene microRNA 702
Gm7284 5 136997962 to 136999452 1490 + pseudogene predicted gene 7284
Gm26989 5 137002002 to 137005547 3545 + pseudogene predicted gene, 26989
D5Mit97 5 137003596 to 137003722 126 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 97
Cpgi16809 5 137025135 to 137025603 468 CpG island CpG island 16809
Tssr49303 5 137025315 to 137025338 23 + TSS region transcription start site region 49303
Vgf 5 137026392 to 137033351 6959 + protein coding gene VGF nerve growth factor inducible
Cpgi16810 5 137028643 to 137029139 496 CpG island CpG island 16810
Cpgi16811 5 137029571 to 137033131 3560 CpG island CpG island 16811
Tssr49304 5 137030275 to 137030290 15 + TSS region transcription start site region 49304
Tssr49305 5 137030668 to 137030692 24 + TSS region transcription start site region 49305
Tssr53886 5 137032410 to 137032442 32 - TSS region transcription start site region 53886
Ap1s1 5 137034993 to 137046060 11067 - protein coding gene adaptor protein complex AP-1, sigma 1
Cpgi16812 5 137045576 to 137046382 806 CpG island CpG island 16812
Tssr53887 5 137046026 to 137046085 59 - TSS region transcription start site region 53887
Tssr49306 5 137046142 to 137046178 36 + TSS region transcription start site region 49306
D5Mit168 5 137058375 to 137058524 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 168
Serpine1 5 137061504 to 137072268 10764 - protein coding gene serine (or cysteine) peptidase inhibitor, clade E, member 1
Tssr53888 5 137061926 to 137061930 4 - TSS region transcription start site region 53888
Tssr53889 5 137062049 to 137062065 16 - TSS region transcription start site region 53889
Tssr53890 5 137062652 to 137062662 10 - TSS region transcription start site region 53890
Tssr53891 5 137062985 to 137063005 20 - TSS region transcription start site region 53891
Tssr53892 5 137063059 to 137063082 23 - TSS region transcription start site region 53892
Tssr53893 5 137066591 to 137066596 5 - TSS region transcription start site region 53893
Tssr53894 5 137066960 to 137066971 11 - TSS region transcription start site region 53894
Tssr49307 5 137066968 to 137066994 26 + TSS region transcription start site region 49307
Tssr53895 5 137067011 to 137067028 17 - TSS region transcription start site region 53895
Tssr53896 5 137067882 to 137067894 12 - TSS region transcription start site region 53896
Tssr53897 5 137069420 to 137069444 24 - TSS region transcription start site region 53897
Tssr53898 5 137071128 to 137071137 9 - TSS region transcription start site region 53898
Tssr53899 5 137071232 to 137071249 17 - TSS region transcription start site region 53899
Tssr53900 5 137072261 to 137072277 16 - TSS region transcription start site region 53900
Cpgi16813 5 137103170 to 137103516 346 CpG island CpG island 16813
Tssr49308 5 137103205 to 137103216 11 + TSS region transcription start site region 49308
Tssr53901 5 137108914 to 137108943 29 - TSS region transcription start site region 53901
Tssr53902 5 137109086 to 137109097 11 - TSS region transcription start site region 53902
Tssr53903 5 137109104 to 137109123 19 - TSS region transcription start site region 53903
Tssr53904 5 137109204 to 137109213 9 - TSS region transcription start site region 53904
Cpgi16814 5 137110127 to 137110594 467 CpG island CpG island 16814
Trim56 5 137111286 to 137116466 5180 - protein coding gene tripartite motif-containing 56
Tssr53905 5 137112351 to 137112360 9 - TSS region transcription start site region 53905
Tssr53906 5 137116177 to 137116219 42 - TSS region transcription start site region 53906
Tssr53907 5 137116221 to 137116241 20 - TSS region transcription start site region 53907
Tssr53908 5 137116249 to 137116271 22 - TSS region transcription start site region 53908
Tssr53909 5 137116413 to 137116462 49 - TSS region transcription start site region 53909
Cpgi16815 5 137126302 to 137126531 229 CpG island CpG island 16815
Muc3 5 137134922 to 137149322 14400 - protein coding gene mucin 3, intestinal
Cpgi16816 5 137138007 to 137138347 340 CpG island CpG island 16816
Tssr53910 5 137138260 to 137138270 10 - TSS region transcription start site region 53910
Tssr53911 5 137138308 to 137138320 12 - TSS region transcription start site region 53911
Tssr53912 5 137139088 to 137139100 12 - TSS region transcription start site region 53912
Tssr53913 5 137139102 to 137139105 3 - TSS region transcription start site region 53913
Tssr53914 5 137139108 to 137139117 9 - TSS region transcription start site region 53914
Tssr53915 5 137139121 to 137139140 19 - TSS region transcription start site region 53915
Tssr53916 5 137144012 to 137144022 10 - TSS region transcription start site region 53916
Tssr53917 5 137146696 to 137146706 10 - TSS region transcription start site region 53917
Tssr53918 5 137146758 to 137146766 8 - TSS region transcription start site region 53918
Tssr1677 5 137149259 to 137149268 9 - TSS region transcription start site region 1677
Tssr53919 5 137149638 to 137149648 10 - TSS region transcription start site region 53919
Tssr53920 5 137149654 to 137149683 29 - TSS region transcription start site region 53920
Tssr49309 5 137149778 to 137149801 23 + TSS region transcription start site region 49309
Tssr53921 5 137149809 to 137149841 32 - TSS region transcription start site region 53921
Tssr53922 5 137149850 to 137149857 7 - TSS region transcription start site region 53922
Tssr53923 5 137149891 to 137149899 8 - TSS region transcription start site region 53923
Tssr53924 5 137149905 to 137149918 13 - TSS region transcription start site region 53924
Tssr53925 5 137149943 to 137149950 7 - TSS region transcription start site region 53925
Tssr53926 5 137149974 to 137149984 10 - TSS region transcription start site region 53926
Tssr53927 5 137150123 to 137150133 10 - TSS region transcription start site region 53927
Tssr49310 5 137150138 to 137150143 5 + TSS region transcription start site region 49310
Tssr53928 5 137150141 to 137150146 5 - TSS region transcription start site region 53928
Tssr49311 5 137150152 to 137150167 15 + TSS region transcription start site region 49311
Tssr53929 5 137150178 to 137150186 8 - TSS region transcription start site region 53929
Tssr53930 5 137150243 to 137150257 14 - TSS region transcription start site region 53930
Tssr53931 5 137150268 to 137150275 7 - TSS region transcription start site region 53931
Tssr53932 5 137150284 to 137150293 9 - TSS region transcription start site region 53932
Tssr53933 5 137150322 to 137150332 10 - TSS region transcription start site region 53933
Tssr53934 5 137150354 to 137150365 11 - TSS region transcription start site region 53934
Tssr53935 5 137150405 to 137150418 13 - TSS region transcription start site region 53935
Tssr53936 5 137150426 to 137150441 15 - TSS region transcription start site region 53936
Tssr1678 5 137150484 to 137150493 9 - TSS region transcription start site region 1678
Tssr53937 5 137150516 to 137150526 10 - TSS region transcription start site region 53937
Tssr49312 5 137150532 to 137150558 26 + TSS region transcription start site region 49312
Tssr53938 5 137150552 to 137150567 15 - TSS region transcription start site region 53938
Tssr53939 5 137150606 to 137150616 10 - TSS region transcription start site region 53939
Tssr49313 5 137150780 to 137150796 16 + TSS region transcription start site region 49313
Tssr53940 5 137150782 to 137150817 35 - TSS region transcription start site region 53940
Tssr53941 5 137150822 to 137150836 14 - TSS region transcription start site region 53941
Tssr53942 5 137150881 to 137150887 6 - TSS region transcription start site region 53942
Tssr53943 5 137151046 to 137151051 5 - TSS region transcription start site region 53943
Tssr49314 5 137151051 to 137151062 11 + TSS region transcription start site region 49314
Tssr49315 5 137151067 to 137151092 25 + TSS region transcription start site region 49315
Tssr53944 5 137151095 to 137151103 8 - TSS region transcription start site region 53944
Tssr53945 5 137151105 to 137151122 17 - TSS region transcription start site region 53945
Tssr53946 5 137151126 to 137151137 11 - TSS region transcription start site region 53946
Tssr53947 5 137151234 to 137151248 14 - TSS region transcription start site region 53947
Tssr1679 5 137151427 to 137151437 10 - TSS region transcription start site region 1679
Tssr1680 5 137151447 to 137151464 17 + TSS region transcription start site region 1680
Tssr1681 5 137151470 to 137151479 9 - TSS region transcription start site region 1681
Tssr1682 5 137151487 to 137151496 9 - TSS region transcription start site region 1682
Tssr1683 5 137151576 to 137151586 10 - TSS region transcription start site region 1683
Tssr1684 5 137151592 to 137151605 13 - TSS region transcription start site region 1684
Tssr1685 5 137151606 to 137151614 8 + TSS region transcription start site region 1685
Tssr1686 5 137151633 to 137151638 5 - TSS region transcription start site region 1686
Tssr1687 5 137151684 to 137151693 9 - TSS region transcription start site region 1687
Tssr1688 5 137151708 to 137151728 20 - TSS region transcription start site region 1688
Tssr1689 5 137151727 to 137151757 30 + TSS region transcription start site region 1689
Tssr1690 5 137151894 to 137151902 8 + TSS region transcription start site region 1690
Tssr1691 5 137151898 to 137151908 10 - TSS region transcription start site region 1691
Tssr49316 5 137151983 to 137152002 19 + TSS region transcription start site region 49316
Tssr1692 5 137152062 to 137152075 13 - TSS region transcription start site region 1692
Tssr53948 5 137152130 to 137152147 17 - TSS region transcription start site region 53948
Tssr53949 5 137152171 to 137152180 9 - TSS region transcription start site region 53949
Tssr1693 5 137152204 to 137152226 22 + TSS region transcription start site region 1693
Tssr1694 5 137152242 to 137152273 31 - TSS region transcription start site region 1694
Tssr49317 5 137152253 to 137152293 40 + TSS region transcription start site region 49317
Tssr53950 5 137152293 to 137152333 40 - TSS region transcription start site region 53950
Tssr1695 5 137152361 to 137152416 55 + TSS region transcription start site region 1695
Tssr53951 5 137152405 to 137152414 9 - TSS region transcription start site region 53951
Tssr1696 5 137152418 to 137152429 11 + TSS region transcription start site region 1696
Tssr53952 5 137152419 to 137152486 67 - TSS region transcription start site region 53952
Tssr49318 5 137152435 to 137152443 8 + TSS region transcription start site region 49318
Tssr53953 5 137152509 to 137152516 7 - TSS region transcription start site region 53953
Tssr1697 5 137152698 to 137152701 3 - TSS region transcription start site region 1697
Tssr53954 5 137152725 to 137152795 70 - TSS region transcription start site region 53954
Tssr53955 5 137152801 to 137152811 10 - TSS region transcription start site region 53955
Tssr53956 5 137152819 to 137152830 11 - TSS region transcription start site region 53956
Tssr53957 5 137152836 to 137152847 11 - TSS region transcription start site region 53957
Tssr49319 5 137152849 to 137152865 16 + TSS region transcription start site region 49319
Tssr53958 5 137152862 to 137152902 40 - TSS region transcription start site region 53958
Tssr49320 5 137152867 to 137152877 10 + TSS region transcription start site region 49320
Tssr53959 5 137152905 to 137152915 10 - TSS region transcription start site region 53959
Tssr53960 5 137152952 to 137152981 29 - TSS region transcription start site region 53960
Tssr53961 5 137153069 to 137153080 11 - TSS region transcription start site region 53961
Tssr53962 5 137153089 to 137153098 9 - TSS region transcription start site region 53962
Tssr53963 5 137153124 to 137153137 13 - TSS region transcription start site region 53963
Tssr53964 5 137153167 to 137153177 10 - TSS region transcription start site region 53964
Tssr53965 5 137153193 to 137153202 9 - TSS region transcription start site region 53965
Gm3054 5 137154029 to 137166070 12041 - lincRNA gene predicted gene 3054
Tssr53966 5 137154061 to 137154071 10 - TSS region transcription start site region 53966
Tssr53967 5 137154087 to 137154104 17 - TSS region transcription start site region 53967
Tssr1698 5 137166030 to 137166052 22 - TSS region transcription start site region 1698
Tssr1699 5 137166164 to 137166181 17 - TSS region transcription start site region 1699
Gm40348 5 137166450 to 137172662 6212 + lincRNA gene predicted gene, 40348
Gm31160 5 137166892 to 137178048 11156 - protein coding gene predicted gene, 31160
D5Mit167 5 137176380 to 137176499 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 167
Gm40349 5 137178295 to 137189819 11524 - protein coding gene predicted gene, 40349
Tssr1700 5 137180059 to 137180070 11 - TSS region transcription start site region 1700
Gm20768 5 137186592 to 137187885 1293 - pseudogene predicted gene, 20768
Tssr1701 5 137187806 to 137187834 28 - TSS region transcription start site region 1701
Tssr1702 5 137187944 to 137187964 20 - TSS region transcription start site region 1702
Tssr1703 5 137207567 to 137207599 32 - TSS region transcription start site region 1703
Tssr1704 5 137207668 to 137207675 7 - TSS region transcription start site region 1704
Tssr1705 5 137207697 to 137207707 10 - TSS region transcription start site region 1705