Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:136278640-138258684

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687 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cux1 5 136248135 to 136567490 319355 - protein coding gene cut-like homeobox 1
Tssr53831 5 136302501 to 136302511 10 - TSS region transcription start site region 53831
Tssr53832 5 136302515 to 136302537 22 - TSS region transcription start site region 53832
Tssr53833 5 136318427 to 136318432 5 - TSS region transcription start site region 53833
D5Mit265 5 136325395 to 136325533 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 265
A430110C17Rik 5 136345884 to 136350231 4347 - unclassified gene RIKEN cDNA A430110C17 gene
Tssr53834 5 136370985 to 136370988 3 - TSS region transcription start site region 53834
Mir721 5 136375716 to 136375803 87 - miRNA gene microRNA 721
Tssr53835 5 136392393 to 136392397 4 - TSS region transcription start site region 53835
Gm16599 5 136392409 to 136417294 24885 + antisense lncRNA gene predicted gene, 16599
Tssr53836 5 136423101 to 136423111 10 - TSS region transcription start site region 53836
Tssr53837 5 136432192 to 136432208 16 - TSS region transcription start site region 53837
Tssr53838 5 136438824 to 136438828 4 - TSS region transcription start site region 53838
Tssr53839 5 136458461 to 136458480 19 - TSS region transcription start site region 53839
Tssr53840 5 136458507 to 136458520 13 - TSS region transcription start site region 53840
Tssr53841 5 136459980 to 136459989 9 - TSS region transcription start site region 53841
Tssr1673 5 136460319 to 136460324 5 + TSS region transcription start site region 1673
Tssr53842 5 136466064 to 136466070 6 - TSS region transcription start site region 53842
Tssr53843 5 136471914 to 136471927 13 - TSS region transcription start site region 53843
Tssr53844 5 136472021 to 136472068 47 - TSS region transcription start site region 53844
Tssr53845 5 136472411 to 136472417 6 - TSS region transcription start site region 53845
Tssr53846 5 136510718 to 136510740 22 - TSS region transcription start site region 53846
Gm38082 5 136529596 to 136536477 6881 - unclassified gene predicted gene, 38082
2600010L24Rik 5 136542296 to 136544055 1759 unclassified gene RIKEN cDNA 2600010L24 gene
Tssr53847 5 136546835 to 136546840 5 - TSS region transcription start site region 53847
Tssr53848 5 136549593 to 136549601 8 - TSS region transcription start site region 53848
Tssr53849 5 136563321 to 136563325 4 - TSS region transcription start site region 53849
Tssr49254 5 136564201 to 136564209 8 + TSS region transcription start site region 49254
Cpgi16793 5 136565316 to 136568333 3017 CpG island CpG island 16793
Tssr53850 5 136565514 to 136565530 16 - TSS region transcription start site region 53850
Tssr53851 5 136565703 to 136565724 21 - TSS region transcription start site region 53851
Tssr53852 5 136566090 to 136566107 17 - TSS region transcription start site region 53852
Tssr53853 5 136566363 to 136566375 12 - TSS region transcription start site region 53853
Tssr53854 5 136566468 to 136566502 34 - TSS region transcription start site region 53854
Tssr53855 5 136566587 to 136566628 41 - TSS region transcription start site region 53855
Tssr53856 5 136567242 to 136567287 45 - TSS region transcription start site region 53856
Tssr53857 5 136567307 to 136567320 13 - TSS region transcription start site region 53857
Tssr53858 5 136567529 to 136567536 7 - TSS region transcription start site region 53858
Tssr53859 5 136567937 to 136567984 47 - TSS region transcription start site region 53859
Cpgi16794 5 136568682 to 136569188 506 CpG island CpG island 16794
Tssr53860 5 136581571 to 136581580 9 - TSS region transcription start site region 53860
Tssr53861 5 136581620 to 136581636 16 - TSS region transcription start site region 53861
Tssr1674 5 136581643 to 136581648 5 - TSS region transcription start site region 1674
Tssr53862 5 136581670 to 136581680 10 - TSS region transcription start site region 53862
Tssr53863 5 136581683 to 136581688 5 - TSS region transcription start site region 53863
Tssr1675 5 136581698 to 136581703 5 - TSS region transcription start site region 1675
Tssr53864 5 136581720 to 136581743 23 - TSS region transcription start site region 53864
Tssr53865 5 136581752 to 136581771 19 - TSS region transcription start site region 53865
Tssr53866 5 136581780 to 136581785 5 - TSS region transcription start site region 53866
Tssr53867 5 136581849 to 136581870 21 - TSS region transcription start site region 53867
Cpgi16795 5 136623121 to 136623535 414 CpG island CpG island 16795
Tssr53868 5 136623123 to 136623141 18 - TSS region transcription start site region 53868
Gm38722 5 136632332 to 136675425 43093 + lncRNA gene predicted gene, 38722
Cpgi16796 5 136664714 to 136664875 161 CpG island CpG island 16796
Tssr49255 5 136689298 to 136689300 2 + TSS region transcription start site region 49255
Tssr49256 5 136691520 to 136691529 9 + TSS region transcription start site region 49256
Tssr49257 5 136692820 to 136692837 17 + TSS region transcription start site region 49257
Tssr49258 5 136692956 to 136692970 14 + TSS region transcription start site region 49258
Tssr49259 5 136693019 to 136693030 11 + TSS region transcription start site region 49259
Tssr49260 5 136693084 to 136693104 20 + TSS region transcription start site region 49260
Myl10 5 136693146 to 136701094 7948 + protein coding gene myosin, light chain 10, regulatory
Tssr49261 5 136693596 to 136693612 16 + TSS region transcription start site region 49261
Tssr49262 5 136693614 to 136693642 28 + TSS region transcription start site region 49262
Tssr49263 5 136693657 to 136693662 5 + TSS region transcription start site region 49263
Tssr49264 5 136693667 to 136693683 16 + TSS region transcription start site region 49264
Tssr49265 5 136694121 to 136694134 13 + TSS region transcription start site region 49265
Tssr49266 5 136694143 to 136694149 6 + TSS region transcription start site region 49266
Tssr49267 5 136694213 to 136694255 42 + TSS region transcription start site region 49267
Tssr49268 5 136695191 to 136695203 12 + TSS region transcription start site region 49268
Tssr49269 5 136695204 to 136695213 9 + TSS region transcription start site region 49269
Tssr49270 5 136695215 to 136695231 16 + TSS region transcription start site region 49270
Tssr49271 5 136695240 to 136695246 6 + TSS region transcription start site region 49271
Tssr53869 5 136695615 to 136695639 24 - TSS region transcription start site region 53869
Tssr53870 5 136696191 to 136696223 32 - TSS region transcription start site region 53870
Tssr49272 5 136697805 to 136697810 5 + TSS region transcription start site region 49272
Tssr49273 5 136697819 to 136697828 9 + TSS region transcription start site region 49273
Tssr49274 5 136697829 to 136697882 53 + TSS region transcription start site region 49274
Tssr49275 5 136701003 to 136701009 6 + TSS region transcription start site region 49275
Cpgi16797 5 136714327 to 136714492 165 CpG island CpG island 16797
Cpgi16798 5 136739361 to 136739550 189 CpG island CpG island 16798
Col26a1 5 136741759 to 136883209 141450 - protein coding gene collagen, type XXVI, alpha 1
Cpgi16799 5 136752184 to 136752492 308 CpG island CpG island 16799
Cpgi16800 5 136810955 to 136811155 200 CpG island CpG island 16800
Tssr53871 5 136812539 to 136812540 1 - TSS region transcription start site region 53871
Gm30654 5 136826091 to 136834665 8574 + lncRNA gene predicted gene, 30654
Cpgi16801 5 136836495 to 136836806 311 CpG island CpG island 16801
Gm20485 5 136863637 to 136869722 6085 - sense intronic lncRNA gene predicted gene 20485
Tssr53872 5 136869729 to 136869736 7 - TSS region transcription start site region 53872
Cpgi16802 5 136881412 to 136883236 1824 CpG island CpG island 16802
Tssr53873 5 136883077 to 136883093 16 - TSS region transcription start site region 53873
Tssr1676 5 136883095 to 136883101 6 - TSS region transcription start site region 1676
Tssr53874 5 136883115 to 136883168 53 - TSS region transcription start site region 53874
Tssr53875 5 136883203 to 136883214 11 - TSS region transcription start site region 53875
Tssr53876 5 136883220 to 136883232 12 - TSS region transcription start site region 53876
Cpgi16803 5 136895117 to 136895352 235 CpG island CpG island 16803
Gm43649 5 136896644 to 136897034 390 + pseudogene predicted gene 43649
Cpgi16804 5 136908012 to 136908383 371 CpG island CpG island 16804
Tssr49276 5 136908130 to 136908174 44 + TSS region transcription start site region 49276
Ift22 5 136908150 to 136914509 6359 + protein coding gene intraflagellar transport 22
Tssr49277 5 136908181 to 136908202 21 + TSS region transcription start site region 49277
Tssr49278 5 136908204 to 136908226 22 + TSS region transcription start site region 49278
Tssr49279 5 136908229 to 136908232 3 + TSS region transcription start site region 49279
Cpgi16805 5 136918934 to 136919464 530 CpG island CpG island 16805
Tssr49280 5 136919137 to 136919188 51 + TSS region transcription start site region 49280
4933404O12Rik 5 136919146 to 136937109 17963 + lincRNA gene RIKEN cDNA 4933404O12 gene
Tssr49281 5 136919227 to 136919238 11 + TSS region transcription start site region 49281
Tssr49282 5 136919338 to 136919381 43 + TSS region transcription start site region 49282
Tssr49283 5 136919594 to 136919623 29 + TSS region transcription start site region 49283
Tssr49284 5 136932938 to 136932958 20 + TSS region transcription start site region 49284
Cpgi16806 5 136952885 to 136953335 450 CpG island CpG island 16806
Tssr49285 5 136953246 to 136953325 79 + TSS region transcription start site region 49285
Fis1 5 136953275 to 136966234 12959 + protein coding gene fission, mitochondrial 1
Tssr49286 5 136953689 to 136953693 4 + TSS region transcription start site region 49286
Tssr53877 5 136956699 to 136956709 10 - TSS region transcription start site region 53877
Cpgi16807 5 136962017 to 136962516 499 CpG island CpG island 16807
Tssr49287 5 136962081 to 136962129 48 + TSS region transcription start site region 49287
Tssr49288 5 136967815 to 136967826 11 + TSS region transcription start site region 49288
Tssr49289 5 136967827 to 136967840 13 + TSS region transcription start site region 49289
Tssr49290 5 136967859 to 136967875 16 + TSS region transcription start site region 49290
Cldn15 5 136967869 to 136975845 7976 + protein coding gene claudin 15
Tssr49291 5 136967896 to 136967907 11 + TSS region transcription start site region 49291
Tssr49292 5 136967909 to 136967924 15 + TSS region transcription start site region 49292
Tssr49293 5 136967930 to 136967941 11 + TSS region transcription start site region 49293
Tssr49294 5 136973911 to 136973929 18 + TSS region transcription start site region 49294
Tssr49295 5 136978076 to 136978078 2 + TSS region transcription start site region 49295
Znhit1 5 136982194 to 136987959 5765 - protein coding gene zinc finger, HIT domain containing 1
Cpgi16808 5 136986662 to 136988170 1508 CpG island CpG island 16808
Tssr53878 5 136986836 to 136986878 42 - TSS region transcription start site region 53878
Plod3 5 136987019 to 136996646 9627 + protein coding gene procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
Tssr49296 5 136987357 to 136987383 26 + TSS region transcription start site region 49296
Tssr49297 5 136987388 to 136987414 26 + TSS region transcription start site region 49297
Tssr49298 5 136987417 to 136987430 13 + TSS region transcription start site region 49298
Tssr49299 5 136987443 to 136987459 16 + TSS region transcription start site region 49299
Tssr49300 5 136987472 to 136987482 10 + TSS region transcription start site region 49300
Tssr53879 5 136987501 to 136987569 68 - TSS region transcription start site region 53879
Tssr49301 5 136987584 to 136987642 58 + TSS region transcription start site region 49301
Tssr49302 5 136987657 to 136987668 11 + TSS region transcription start site region 49302
Tssr53880 5 136987681 to 136987696 15 - TSS region transcription start site region 53880
Tssr53881 5 136987701 to 136987714 13 - TSS region transcription start site region 53881
Tssr53882 5 136987757 to 136987768 11 - TSS region transcription start site region 53882
Tssr53883 5 136987784 to 136987801 17 - TSS region transcription start site region 53883
Tssr53884 5 136987818 to 136987829 11 - TSS region transcription start site region 53884
Tssr53885 5 136987856 to 136987866 10 - TSS region transcription start site region 53885
Mir702 5 136991433 to 136991541 108 + miRNA gene microRNA 702
Gm7284 5 136997962 to 136999452 1490 + pseudogene predicted gene 7284
Gm26989 5 137002002 to 137005547 3545 + pseudogene predicted gene, 26989
D5Mit97 5 137003596 to 137003722 126 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 97
Cpgi16809 5 137025135 to 137025603 468 CpG island CpG island 16809
Tssr49303 5 137025315 to 137025338 23 + TSS region transcription start site region 49303
Vgf 5 137026392 to 137033351 6959 + protein coding gene VGF nerve growth factor inducible
Cpgi16810 5 137028643 to 137029139 496 CpG island CpG island 16810
Cpgi16811 5 137029571 to 137033131 3560 CpG island CpG island 16811
Tssr49304 5 137030275 to 137030290 15 + TSS region transcription start site region 49304
Tssr49305 5 137030668 to 137030692 24 + TSS region transcription start site region 49305
Tssr53886 5 137032410 to 137032442 32 - TSS region transcription start site region 53886
Ap1s1 5 137034993 to 137046060 11067 - protein coding gene adaptor protein complex AP-1, sigma 1
Cpgi16812 5 137045576 to 137046382 806 CpG island CpG island 16812
Tssr53887 5 137046026 to 137046085 59 - TSS region transcription start site region 53887
Tssr49306 5 137046142 to 137046178 36 + TSS region transcription start site region 49306
D5Mit168 5 137058375 to 137058524 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 168
Serpine1 5 137061504 to 137072268 10764 - protein coding gene serine (or cysteine) peptidase inhibitor, clade E, member 1
Tssr53888 5 137061926 to 137061930 4 - TSS region transcription start site region 53888
Tssr53889 5 137062049 to 137062065 16 - TSS region transcription start site region 53889
Tssr53890 5 137062652 to 137062662 10 - TSS region transcription start site region 53890
Tssr53891 5 137062985 to 137063005 20 - TSS region transcription start site region 53891
Tssr53892 5 137063059 to 137063082 23 - TSS region transcription start site region 53892
Tssr53893 5 137066591 to 137066596 5 - TSS region transcription start site region 53893
Tssr53894 5 137066960 to 137066971 11 - TSS region transcription start site region 53894
Tssr49307 5 137066968 to 137066994 26 + TSS region transcription start site region 49307
Tssr53895 5 137067011 to 137067028 17 - TSS region transcription start site region 53895
Tssr53896 5 137067882 to 137067894 12 - TSS region transcription start site region 53896
Tssr53897 5 137069420 to 137069444 24 - TSS region transcription start site region 53897
Tssr53898 5 137071128 to 137071137 9 - TSS region transcription start site region 53898
Tssr53899 5 137071232 to 137071249 17 - TSS region transcription start site region 53899
Tssr53900 5 137072261 to 137072277 16 - TSS region transcription start site region 53900
Cpgi16813 5 137103170 to 137103516 346 CpG island CpG island 16813
Tssr49308 5 137103205 to 137103216 11 + TSS region transcription start site region 49308
Tssr53901 5 137108914 to 137108943 29 - TSS region transcription start site region 53901
Tssr53902 5 137109086 to 137109097 11 - TSS region transcription start site region 53902
Tssr53903 5 137109104 to 137109123 19 - TSS region transcription start site region 53903
Tssr53904 5 137109204 to 137109213 9 - TSS region transcription start site region 53904
Cpgi16814 5 137110127 to 137110594 467 CpG island CpG island 16814
Trim56 5 137111286 to 137116466 5180 - protein coding gene tripartite motif-containing 56
Tssr53905 5 137112351 to 137112360 9 - TSS region transcription start site region 53905
Tssr53906 5 137116177 to 137116219 42 - TSS region transcription start site region 53906
Tssr53907 5 137116221 to 137116241 20 - TSS region transcription start site region 53907
Tssr53908 5 137116249 to 137116271 22 - TSS region transcription start site region 53908
Tssr53909 5 137116413 to 137116462 49 - TSS region transcription start site region 53909
Cpgi16815 5 137126302 to 137126531 229 CpG island CpG island 16815
Muc3 5 137134922 to 137149322 14400 - protein coding gene mucin 3, intestinal
Cpgi16816 5 137138007 to 137138347 340 CpG island CpG island 16816
Tssr53910 5 137138260 to 137138270 10 - TSS region transcription start site region 53910
Tssr53911 5 137138308 to 137138320 12 - TSS region transcription start site region 53911
Tssr53912 5 137139088 to 137139100 12 - TSS region transcription start site region 53912
Tssr53913 5 137139102 to 137139105 3 - TSS region transcription start site region 53913
Tssr53914 5 137139108 to 137139117 9 - TSS region transcription start site region 53914
Tssr53915 5 137139121 to 137139140 19 - TSS region transcription start site region 53915
Tssr53916 5 137144012 to 137144022 10 - TSS region transcription start site region 53916
Tssr53917 5 137146696 to 137146706 10 - TSS region transcription start site region 53917
Tssr53918 5 137146758 to 137146766 8 - TSS region transcription start site region 53918