Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:136198135-136617490

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkrip1 5 136180357 to 136198954 18597 - protein coding gene Prkr interacting protein 1 (IL11 inducible)
Cpgi16787 5 136198262 to 136199265 1003 CpG island CpG island 16787
Tssr53815 5 136198914 to 136198970 56 - TSS region transcription start site region 53815
Tssr49248 5 136199023 to 136199060 37 + TSS region transcription start site region 49248
Gm5050 5 136211012 to 136211786 774 - pseudogene predicted gene 5050
Tssr53816 5 136217365 to 136217372 7 - TSS region transcription start site region 53816
Tssr49249 5 136217551 to 136217578 27 + TSS region transcription start site region 49249
Sh2b2 5 136218147 to 136246556 28409 - protein coding gene SH2B adaptor protein 2
Tssr49250 5 136228421 to 136228428 7 + TSS region transcription start site region 49250
Cpgi16788 5 136231668 to 136232409 741 CpG island CpG island 16788
Tssr49251 5 136237028 to 136237061 33 + TSS region transcription start site region 49251
Cpgi16789 5 136237677 to 136237945 268 CpG island CpG island 16789
Cpgi16790 5 136243734 to 136245578 1844 CpG island CpG island 16790
Tssr53817 5 136244848 to 136244859 11 - TSS region transcription start site region 53817
Tssr53818 5 136244865 to 136244908 43 - TSS region transcription start site region 53818
Tssr53819 5 136244931 to 136244949 18 - TSS region transcription start site region 53819
Tssr53820 5 136245250 to 136245263 13 - TSS region transcription start site region 53820
Tssr53821 5 136245296 to 136245304 8 - TSS region transcription start site region 53821
Tssr49252 5 136245516 to 136245532 16 + TSS region transcription start site region 49252
Gm30408 5 136245534 to 136251363 5829 + lncRNA gene predicted gene, 30408
Tssr53822 5 136245983 to 136245986 3 - TSS region transcription start site region 53822
Tssr53823 5 136246518 to 136246542 24 - TSS region transcription start site region 53823
Tssr53824 5 136246553 to 136246558 5 - TSS region transcription start site region 53824
Tssr53825 5 136246559 to 136246570 11 - TSS region transcription start site region 53825
Tssr53826 5 136246579 to 136246598 19 - TSS region transcription start site region 53826
Tssr49253 5 136247473 to 136247505 32 + TSS region transcription start site region 49253
Cux1 5 136248135 to 136567490 319355 - protein coding gene cut-like homeobox 1
Cpgi16791 5 136252521 to 136252742 221 CpG island CpG island 16791
Tssr53827 5 136266714 to 136266727 13 - TSS region transcription start site region 53827
Tssr53828 5 136268796 to 136268801 5 - TSS region transcription start site region 53828
Tssr53829 5 136272693 to 136272699 6 - TSS region transcription start site region 53829
Cpgi16792 5 136274620 to 136275523 903 CpG island CpG island 16792
Tssr53830 5 136276258 to 136276260 2 - TSS region transcription start site region 53830
Tssr53831 5 136302501 to 136302511 10 - TSS region transcription start site region 53831
Tssr53832 5 136302515 to 136302537 22 - TSS region transcription start site region 53832
Tssr53833 5 136318427 to 136318432 5 - TSS region transcription start site region 53833
D5Mit265 5 136325395 to 136325533 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 265
A430110C17Rik 5 136345884 to 136350231 4347 - unclassified gene RIKEN cDNA A430110C17 gene
Tssr53834 5 136370985 to 136370988 3 - TSS region transcription start site region 53834
Mir721 5 136375716 to 136375803 87 - miRNA gene microRNA 721
Tssr53835 5 136392393 to 136392397 4 - TSS region transcription start site region 53835
Gm16599 5 136392409 to 136417294 24885 + antisense lncRNA gene predicted gene, 16599
Tssr53836 5 136423101 to 136423111 10 - TSS region transcription start site region 53836
Tssr53837 5 136432192 to 136432208 16 - TSS region transcription start site region 53837
Tssr53838 5 136438824 to 136438828 4 - TSS region transcription start site region 53838
Tssr53839 5 136458461 to 136458480 19 - TSS region transcription start site region 53839
Tssr53840 5 136458507 to 136458520 13 - TSS region transcription start site region 53840
Tssr53841 5 136459980 to 136459989 9 - TSS region transcription start site region 53841
Tssr1673 5 136460319 to 136460324 5 + TSS region transcription start site region 1673
Tssr53842 5 136466064 to 136466070 6 - TSS region transcription start site region 53842
Tssr53843 5 136471914 to 136471927 13 - TSS region transcription start site region 53843
Tssr53844 5 136472021 to 136472068 47 - TSS region transcription start site region 53844
Tssr53845 5 136472411 to 136472417 6 - TSS region transcription start site region 53845
Tssr53846 5 136510718 to 136510740 22 - TSS region transcription start site region 53846
Gm38082 5 136529596 to 136536477 6881 - unclassified gene predicted gene, 38082
2600010L24Rik 5 136542296 to 136544055 1759 unclassified gene RIKEN cDNA 2600010L24 gene
Tssr53847 5 136546835 to 136546840 5 - TSS region transcription start site region 53847
Tssr53848 5 136549593 to 136549601 8 - TSS region transcription start site region 53848
Tssr53849 5 136563321 to 136563325 4 - TSS region transcription start site region 53849
Tssr49254 5 136564201 to 136564209 8 + TSS region transcription start site region 49254
Cpgi16793 5 136565316 to 136568333 3017 CpG island CpG island 16793
Tssr53850 5 136565514 to 136565530 16 - TSS region transcription start site region 53850
Tssr53851 5 136565703 to 136565724 21 - TSS region transcription start site region 53851
Tssr53852 5 136566090 to 136566107 17 - TSS region transcription start site region 53852
Tssr53853 5 136566363 to 136566375 12 - TSS region transcription start site region 53853
Tssr53854 5 136566468 to 136566502 34 - TSS region transcription start site region 53854
Tssr53855 5 136566587 to 136566628 41 - TSS region transcription start site region 53855
Tssr53856 5 136567242 to 136567287 45 - TSS region transcription start site region 53856
Tssr53857 5 136567307 to 136567320 13 - TSS region transcription start site region 53857
Tssr53858 5 136567529 to 136567536 7 - TSS region transcription start site region 53858
Tssr53859 5 136567937 to 136567984 47 - TSS region transcription start site region 53859
Cpgi16794 5 136568682 to 136569188 506 CpG island CpG island 16794
Tssr53860 5 136581571 to 136581580 9 - TSS region transcription start site region 53860
Tssr53861 5 136581620 to 136581636 16 - TSS region transcription start site region 53861
Tssr1674 5 136581643 to 136581648 5 - TSS region transcription start site region 1674
Tssr53862 5 136581670 to 136581680 10 - TSS region transcription start site region 53862
Tssr53863 5 136581683 to 136581688 5 - TSS region transcription start site region 53863
Tssr1675 5 136581698 to 136581703 5 - TSS region transcription start site region 1675
Tssr53864 5 136581720 to 136581743 23 - TSS region transcription start site region 53864
Tssr53865 5 136581752 to 136581771 19 - TSS region transcription start site region 53865
Tssr53866 5 136581780 to 136581785 5 - TSS region transcription start site region 53866
Tssr53867 5 136581849 to 136581870 21 - TSS region transcription start site region 53867