Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:135948824-136928828

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249 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr53783 5 135957510 to 135957521 11 - TSS region transcription start site region 53783
Tssr53784 5 135957531 to 135957571 40 - TSS region transcription start site region 53784
Tssr53785 5 135957580 to 135957590 10 - TSS region transcription start site region 53785
Cpgi16774 5 135957609 to 135957940 331 CpG island CpG island 16774
Tssr1667 5 135957882 to 135957899 17 + TSS region transcription start site region 1667
Tssr49206 5 135958103 to 135958107 4 + TSS region transcription start site region 49206
Ssc4d 5 135960220 to 135974535 14315 - protein coding gene scavenger receptor cysteine rich family, 4 domains
Tssr53786 5 135962265 to 135962274 9 - TSS region transcription start site region 53786
Tssr53787 5 135962275 to 135962328 53 - TSS region transcription start site region 53787
Cpgi16775 5 135962437 to 135963451 1014 CpG island CpG island 16775
Tssr49207 5 135962919 to 135962932 13 + TSS region transcription start site region 49207
Tssr49208 5 135962939 to 135962960 21 + TSS region transcription start site region 49208
Cpgi16776 5 135965461 to 135965928 467 CpG island CpG island 16776
Cpgi16777 5 135967804 to 135968141 337 CpG island CpG island 16777
Tssr1668 5 135974520 to 135974552 32 - TSS region transcription start site region 1668
Tssr49209 5 135980104 to 135980108 4 + TSS region transcription start site region 49209
Zp3 5 135980105 to 135988624 8519 + protein coding gene zona pellucida glycoprotein 3
Cpgi16778 5 135980313 to 135980644 331 CpG island CpG island 16778
Tssr49210 5 135984158 to 135984161 3 + TSS region transcription start site region 49210
Tssr49211 5 135984205 to 135984216 11 + TSS region transcription start site region 49211
Cpgi16779 5 135994678 to 135995250 572 CpG island CpG island 16779
Tssr49212 5 135994796 to 135994884 88 + TSS region transcription start site region 49212
Dtx2 5 135994800 to 136032872 38072 + protein coding gene deltex 2, E3 ubiquitin ligase
Tssr1669 5 136015186 to 136015203 17 + TSS region transcription start site region 1669
Upk3b 5 136038496 to 136044993 6497 + protein coding gene uroplakin 3B
Tssr49213 5 136038681 to 136038707 26 + TSS region transcription start site region 49213
Tssr49214 5 136038771 to 136038803 32 + TSS region transcription start site region 49214
Tssr1670 5 136039058 to 136039072 14 + TSS region transcription start site region 1670
Tssr49215 5 136039086 to 136039114 28 + TSS region transcription start site region 49215
Tssr49216 5 136054468 to 136054475 7 + TSS region transcription start site region 49216
Upk3bl 5 136054492 to 136064326 9834 + protein coding gene uroplakin 3B-like
Tssr49217 5 136057123 to 136057131 8 + TSS region transcription start site region 49217
Tssr49218 5 136057138 to 136057143 5 + TSS region transcription start site region 49218
Tssr49219 5 136057287 to 136057298 11 + TSS region transcription start site region 49219
Tssr49220 5 136057304 to 136057346 42 + TSS region transcription start site region 49220
Tssr49221 5 136057348 to 136057362 14 + TSS region transcription start site region 49221
Tssr1671 5 136060026 to 136060036 10 + TSS region transcription start site region 1671
Tssr49222 5 136060037 to 136060052 15 + TSS region transcription start site region 49222
Tssr49223 5 136060055 to 136060086 31 + TSS region transcription start site region 49223
Tssr49224 5 136060088 to 136060102 14 + TSS region transcription start site region 49224
Gm40347 5 136072494 to 136074804 2310 - lncRNA gene predicted gene, 40347
Cpgi16780 5 136083839 to 136084607 768 CpG island CpG island 16780
Tssr49225 5 136083911 to 136083920 9 + TSS region transcription start site region 49225
Rasa4 5 136083916 to 136111860 27944 + protein coding gene RAS p21 protein activator 4
Tssr49226 5 136083942 to 136084010 68 + TSS region transcription start site region 49226
Tssr49227 5 136084022 to 136084038 16 + TSS region transcription start site region 49227
Tssr49228 5 136084083 to 136084101 18 + TSS region transcription start site region 49228
Cpgi16781 5 136084897 to 136085090 193 CpG island CpG island 16781
Tssr49229 5 136089668 to 136089679 11 + TSS region transcription start site region 49229
Tssr49230 5 136089837 to 136089851 14 + TSS region transcription start site region 49230
Tssr49231 5 136089948 to 136089964 16 + TSS region transcription start site region 49231
Tssr49232 5 136091227 to 136091264 37 + TSS region transcription start site region 49232
Tssr49233 5 136093294 to 136093301 7 + TSS region transcription start site region 49233
Gm22214 5 136096260 to 136096431 171 - snRNA gene predicted gene, 22214
Tssr49234 5 136096446 to 136096455 9 + TSS region transcription start site region 49234
Tssr49235 5 136096870 to 136096884 14 + TSS region transcription start site region 49235
Tssr49236 5 136099615 to 136099621 6 + TSS region transcription start site region 49236
Cpgi16782 5 136102181 to 136102781 600 CpG island CpG island 16782
Tssr49237 5 136102323 to 136102378 55 + TSS region transcription start site region 49237
Gm15701 5 136102604 to 136104436 1832 - antisense lncRNA gene predicted gene 15701
Tssr49238 5 136103363 to 136103374 11 + TSS region transcription start site region 49238
Mir7035 5 136105522 to 136105603 81 + miRNA gene microRNA 7035
Tssr49239 5 136110540 to 136110563 23 + TSS region transcription start site region 49239
Tssr49240 5 136110573 to 136110597 24 + TSS region transcription start site region 49240
Tssr49241 5 136110606 to 136110629 23 + TSS region transcription start site region 49241
Cpgi16783 5 136116383 to 136117104 721 CpG island CpG island 16783
Tssr53788 5 136116518 to 136116564 46 - TSS region transcription start site region 53788
Tssr49242 5 136116678 to 136116740 62 + TSS region transcription start site region 49242
Polr2j 5 136116691 to 136122947 6256 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide J
Gm43604 5 136120966 to 136121670 704 - antisense lncRNA gene predicted gene 43604
Lrwd1 5 136123066 to 136136074 13008 - protein coding gene leucine-rich repeats and WD repeat domain containing 1
Cpgi16784 5 136135520 to 136136342 822 CpG island CpG island 16784
Tssr53789 5 136135989 to 136136087 98 - TSS region transcription start site region 53789
Tssr53790 5 136136117 to 136136124 7 - TSS region transcription start site region 53790
Tssr53791 5 136136126 to 136136134 8 - TSS region transcription start site region 53791
Tssr49243 5 136136137 to 136136174 37 + TSS region transcription start site region 49243
Alkbh4 5 136136146 to 136141615 5469 + protein coding gene alkB homolog 4, lysine demethylase
Tssr49244 5 136136202 to 136136211 9 + TSS region transcription start site region 49244
Tssr49245 5 136136223 to 136136256 33 + TSS region transcription start site region 49245
Tssr49246 5 136136271 to 136136274 3 + TSS region transcription start site region 49246
Cpgi16785 5 136140296 to 136140658 362 CpG island CpG island 16785
Orai2 5 136147456 to 136170656 23200 - protein coding gene ORAI calcium release-activated calcium modulator 2
Tssr53792 5 136160746 to 136160771 25 - TSS region transcription start site region 53792
Tssr53793 5 136160948 to 136160963 15 - TSS region transcription start site region 53793
Tssr53794 5 136161207 to 136161227 20 - TSS region transcription start site region 53794
Tssr53795 5 136161245 to 136161281 36 - TSS region transcription start site region 53795
Tssr53796 5 136161292 to 136161310 18 - TSS region transcription start site region 53796
Tssr53797 5 136161323 to 136161360 37 - TSS region transcription start site region 53797
Tssr53798 5 136161381 to 136161392 11 - TSS region transcription start site region 53798
Tssr53799 5 136161395 to 136161407 12 - TSS region transcription start site region 53799
Tssr53800 5 136161415 to 136161461 46 - TSS region transcription start site region 53800
D5Mit341 5 136161723 to 136161920 197 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 341
Tssr53801 5 136162022 to 136162033 11 - TSS region transcription start site region 53801
Tssr53802 5 136162058 to 136162071 13 - TSS region transcription start site region 53802
Tssr53803 5 136165042 to 136165058 16 - TSS region transcription start site region 53803
Tssr53804 5 136165089 to 136165100 11 - TSS region transcription start site region 53804
Tssr53805 5 136165227 to 136165232 5 - TSS region transcription start site region 53805
Tssr53806 5 136165242 to 136165253 11 - TSS region transcription start site region 53806
Tssr53807 5 136165835 to 136165851 16 - TSS region transcription start site region 53807
Tssr53808 5 136166095 to 136166101 6 - TSS region transcription start site region 53808
Tssr53809 5 136169993 to 136169997 4 - TSS region transcription start site region 53809
Cpgi16786 5 136170265 to 136171501 1236 CpG island CpG island 16786
Tssr53810 5 136170634 to 136170661 27 - TSS region transcription start site region 53810
Tssr53811 5 136170671 to 136170698 27 - TSS region transcription start site region 53811
Tssr53812 5 136171165 to 136171176 11 - TSS region transcription start site region 53812
Tssr53813 5 136171179 to 136171190 11 - TSS region transcription start site region 53813
Tssr49247 5 136171559 to 136171584 25 + TSS region transcription start site region 49247
Tssr53814 5 136171596 to 136171629 33 - TSS region transcription start site region 53814
Tssr1672 5 136179750 to 136179787 37 + TSS region transcription start site region 1672
Prkrip1 5 136180357 to 136198954 18597 - protein coding gene Prkr interacting protein 1 (IL11 inducible)
Cpgi16787 5 136198262 to 136199265 1003 CpG island CpG island 16787
Tssr53815 5 136198914 to 136198970 56 - TSS region transcription start site region 53815
Tssr49248 5 136199023 to 136199060 37 + TSS region transcription start site region 49248
Gm5050 5 136211012 to 136211786 774 - pseudogene predicted gene 5050
Tssr53816 5 136217365 to 136217372 7 - TSS region transcription start site region 53816
Tssr49249 5 136217551 to 136217578 27 + TSS region transcription start site region 49249
Sh2b2 5 136218147 to 136246556 28409 - protein coding gene SH2B adaptor protein 2
Tssr49250 5 136228421 to 136228428 7 + TSS region transcription start site region 49250
Cpgi16788 5 136231668 to 136232409 741 CpG island CpG island 16788
Tssr49251 5 136237028 to 136237061 33 + TSS region transcription start site region 49251
Cpgi16789 5 136237677 to 136237945 268 CpG island CpG island 16789
Cpgi16790 5 136243734 to 136245578 1844 CpG island CpG island 16790
Tssr53817 5 136244848 to 136244859 11 - TSS region transcription start site region 53817
Tssr53818 5 136244865 to 136244908 43 - TSS region transcription start site region 53818
Tssr53819 5 136244931 to 136244949 18 - TSS region transcription start site region 53819
Tssr53820 5 136245250 to 136245263 13 - TSS region transcription start site region 53820
Tssr53821 5 136245296 to 136245304 8 - TSS region transcription start site region 53821
Tssr49252 5 136245516 to 136245532 16 + TSS region transcription start site region 49252
Gm30408 5 136245534 to 136251363 5829 + lncRNA gene predicted gene, 30408
Tssr53822 5 136245983 to 136245986 3 - TSS region transcription start site region 53822
Tssr53823 5 136246518 to 136246542 24 - TSS region transcription start site region 53823
Tssr53824 5 136246553 to 136246558 5 - TSS region transcription start site region 53824
Tssr53825 5 136246559 to 136246570 11 - TSS region transcription start site region 53825
Tssr53826 5 136246579 to 136246598 19 - TSS region transcription start site region 53826
Tssr49253 5 136247473 to 136247505 32 + TSS region transcription start site region 49253
Cux1 5 136248135 to 136567490 319355 - protein coding gene cut-like homeobox 1
Cpgi16791 5 136252521 to 136252742 221 CpG island CpG island 16791
Tssr53827 5 136266714 to 136266727 13 - TSS region transcription start site region 53827
Tssr53828 5 136268796 to 136268801 5 - TSS region transcription start site region 53828
Tssr53829 5 136272693 to 136272699 6 - TSS region transcription start site region 53829
Cpgi16792 5 136274620 to 136275523 903 CpG island CpG island 16792
Tssr53830 5 136276258 to 136276260 2 - TSS region transcription start site region 53830
Tssr53831 5 136302501 to 136302511 10 - TSS region transcription start site region 53831
Tssr53832 5 136302515 to 136302537 22 - TSS region transcription start site region 53832
Tssr53833 5 136318427 to 136318432 5 - TSS region transcription start site region 53833
D5Mit265 5 136325395 to 136325533 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 265
A430110C17Rik 5 136345884 to 136350231 4347 - unclassified gene RIKEN cDNA A430110C17 gene
Tssr53834 5 136370985 to 136370988 3 - TSS region transcription start site region 53834
Mir721 5 136375716 to 136375803 87 - miRNA gene microRNA 721
Tssr53835 5 136392393 to 136392397 4 - TSS region transcription start site region 53835
Gm16599 5 136392409 to 136417294 24885 + antisense lncRNA gene predicted gene, 16599
Tssr53836 5 136423101 to 136423111 10 - TSS region transcription start site region 53836
Tssr53837 5 136432192 to 136432208 16 - TSS region transcription start site region 53837
Tssr53838 5 136438824 to 136438828 4 - TSS region transcription start site region 53838
Tssr53839 5 136458461 to 136458480 19 - TSS region transcription start site region 53839
Tssr53840 5 136458507 to 136458520 13 - TSS region transcription start site region 53840
Tssr53841 5 136459980 to 136459989 9 - TSS region transcription start site region 53841
Tssr1673 5 136460319 to 136460324 5 + TSS region transcription start site region 1673
Tssr53842 5 136466064 to 136466070 6 - TSS region transcription start site region 53842
Tssr53843 5 136471914 to 136471927 13 - TSS region transcription start site region 53843
Tssr53844 5 136472021 to 136472068 47 - TSS region transcription start site region 53844
Tssr53845 5 136472411 to 136472417 6 - TSS region transcription start site region 53845
Tssr53846 5 136510718 to 136510740 22 - TSS region transcription start site region 53846
Gm38082 5 136529596 to 136536477 6881 - unclassified gene predicted gene, 38082
2600010L24Rik 5 136542296 to 136544055 1759 unclassified gene RIKEN cDNA 2600010L24 gene
Tssr53847 5 136546835 to 136546840 5 - TSS region transcription start site region 53847
Tssr53848 5 136549593 to 136549601 8 - TSS region transcription start site region 53848
Tssr53849 5 136563321 to 136563325 4 - TSS region transcription start site region 53849
Tssr49254 5 136564201 to 136564209 8 + TSS region transcription start site region 49254
Cpgi16793 5 136565316 to 136568333 3017 CpG island CpG island 16793
Tssr53850 5 136565514 to 136565530 16 - TSS region transcription start site region 53850
Tssr53851 5 136565703 to 136565724 21 - TSS region transcription start site region 53851
Tssr53852 5 136566090 to 136566107 17 - TSS region transcription start site region 53852
Tssr53853 5 136566363 to 136566375 12 - TSS region transcription start site region 53853
Tssr53854 5 136566468 to 136566502 34 - TSS region transcription start site region 53854
Tssr53855 5 136566587 to 136566628 41 - TSS region transcription start site region 53855
Tssr53856 5 136567242 to 136567287 45 - TSS region transcription start site region 53856
Tssr53857 5 136567307 to 136567320 13 - TSS region transcription start site region 53857
Tssr53858 5 136567529 to 136567536 7 - TSS region transcription start site region 53858
Tssr53859 5 136567937 to 136567984 47 - TSS region transcription start site region 53859
Cpgi16794 5 136568682 to 136569188 506 CpG island CpG island 16794
Tssr53860 5 136581571 to 136581580 9 - TSS region transcription start site region 53860
Tssr53861 5 136581620 to 136581636 16 - TSS region transcription start site region 53861
Tssr1674 5 136581643 to 136581648 5 - TSS region transcription start site region 1674
Tssr53862 5 136581670 to 136581680 10 - TSS region transcription start site region 53862
Tssr53863 5 136581683 to 136581688 5 - TSS region transcription start site region 53863
Tssr1675 5 136581698 to 136581703 5 - TSS region transcription start site region 1675
Tssr53864 5 136581720 to 136581743 23 - TSS region transcription start site region 53864
Tssr53865 5 136581752 to 136581771 19 - TSS region transcription start site region 53865
Tssr53866 5 136581780 to 136581785 5 - TSS region transcription start site region 53866
Tssr53867 5 136581849 to 136581870 21 - TSS region transcription start site region 53867
Cpgi16795 5 136623121 to 136623535 414 CpG island CpG island 16795
Tssr53868 5 136623123 to 136623141 18 - TSS region transcription start site region 53868
Gm38722 5 136632332 to 136675425 43093 + lncRNA gene predicted gene, 38722
Cpgi16796 5 136664714 to 136664875 161 CpG island CpG island 16796
Tssr49255 5 136689298 to 136689300 2 + TSS region transcription start site region 49255
Tssr49256 5 136691520 to 136691529 9 + TSS region transcription start site region 49256
Tssr49257 5 136692820 to 136692837 17 + TSS region transcription start site region 49257
Tssr49258 5 136692956 to 136692970 14 + TSS region transcription start site region 49258
Tssr49259 5 136693019 to 136693030 11 + TSS region transcription start site region 49259