Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:135798911-136368920

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16764 5 135806679 to 135807065 386 CpG island CpG island 16764
Tssr49195 5 135806859 to 135806902 43 + TSS region transcription start site region 49195
Srrm3 5 135806890 to 135874772 67882 + protein coding gene serine/arginine repetitive matrix 3
D5Mit33 5 135829291 to 135829405 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 33
D5Mit33.2 5 135829408 to 135829531 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 33.2
Cpgi16765 5 135834840 to 135835641 801 CpG island CpG island 16765
Gm23268 5 135837295 to 135837372 77 - miRNA gene predicted gene, 23268
Srrm3os 5 135843057 to 135844946 1889 - antisense lncRNA gene serine/arginine repetitive matrix 3, opposite strand
Tssr49196 5 135851420 to 135851451 31 + TSS region transcription start site region 49196
Cpgi16766 5 135851955 to 135852566 611 CpG island CpG island 16766
Cpgi16767 5 135856874 to 135857512 638 CpG island CpG island 16767
Tssr49197 5 135862854 to 135862859 5 + TSS region transcription start site region 49197
Tssr49198 5 135863020 to 135863032 12 + TSS region transcription start site region 49198
Tssr49199 5 135863042 to 135863054 12 + TSS region transcription start site region 49199
Cpgi16768 5 135867683 to 135869355 1672 CpG island CpG island 16768
Cpgi16769 5 135873085 to 135873268 183 CpG island CpG island 16769
Gm22450 5 135875657 to 135875763 106 + snRNA gene predicted gene, 22450
Cpgi16770 5 135887710 to 135888086 376 CpG island CpG island 16770
Tssr49200 5 135887905 to 135887923 18 + TSS region transcription start site region 49200
Hspb1 5 135887919 to 135889563 1644 + protein coding gene heat shock protein 1
Tssr49201 5 135887940 to 135887970 30 + TSS region transcription start site region 49201
Tssr49202 5 135887975 to 135887986 11 + TSS region transcription start site region 49202
Tssr49203 5 135887988 to 135888011 23 + TSS region transcription start site region 49203
Cpgi16771 5 135888410 to 135888874 464 CpG island CpG island 16771
Tssr49204 5 135889038 to 135889042 4 + TSS region transcription start site region 49204
Gm42533 5 135896330 to 135896486 156 - pseudogene predicted gene 42533
Cpgi16772 5 135903551 to 135904008 457 CpG island CpG island 16772
Ywhag 5 135908409 to 135934616 26207 - protein coding gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
Tssr53763 5 135908888 to 135909006 118 - TSS region transcription start site region 53763
Tssr53764 5 135909234 to 135909250 16 - TSS region transcription start site region 53764
Tssr53765 5 135909471 to 135909486 15 - TSS region transcription start site region 53765
Tssr53766 5 135910140 to 135910166 26 - TSS region transcription start site region 53766
Tssr53767 5 135910580 to 135910598 18 - TSS region transcription start site region 53767
Tssr53768 5 135910618 to 135910655 37 - TSS region transcription start site region 53768
Tssr53769 5 135910681 to 135910692 11 - TSS region transcription start site region 53769
Tssr53770 5 135910781 to 135910794 13 - TSS region transcription start site region 53770
Tssr53771 5 135910870 to 135910887 17 - TSS region transcription start site region 53771
Tssr53772 5 135910888 to 135910912 24 - TSS region transcription start site region 53772
Tssr53773 5 135911304 to 135911322 18 - TSS region transcription start site region 53773
Tssr53774 5 135911346 to 135911360 14 - TSS region transcription start site region 53774
Tssr53775 5 135911448 to 135911466 18 - TSS region transcription start site region 53775
Tssr53776 5 135911473 to 135911484 11 - TSS region transcription start site region 53776
Tssr53777 5 135911546 to 135911558 12 - TSS region transcription start site region 53777
Tssr53778 5 135911570 to 135911583 13 - TSS region transcription start site region 53778
D5Mit32 5 135920110 to 135920232 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 32
Bglq14 5 135920110 to 135920232 122 QTL body growth late QTL 14
Gm40346 5 135930673 to 135934316 3643 - lncRNA gene predicted gene, 40346
Tssr53779 5 135933700 to 135933705 5 - TSS region transcription start site region 53779
Cpgi16773 5 135933938 to 135935080 1142 CpG island CpG island 16773
Tssr53780 5 135934557 to 135934568 11 - TSS region transcription start site region 53780
Tssr53781 5 135934590 to 135934613 23 - TSS region transcription start site region 53781
Tssr53782 5 135934619 to 135934633 14 - TSS region transcription start site region 53782
Tssr49205 5 135935089 to 135935120 31 + TSS region transcription start site region 49205
Tssr53783 5 135957510 to 135957521 11 - TSS region transcription start site region 53783
Tssr53784 5 135957531 to 135957571 40 - TSS region transcription start site region 53784
Tssr53785 5 135957580 to 135957590 10 - TSS region transcription start site region 53785
Cpgi16774 5 135957609 to 135957940 331 CpG island CpG island 16774
Tssr1667 5 135957882 to 135957899 17 + TSS region transcription start site region 1667
Tssr49206 5 135958103 to 135958107 4 + TSS region transcription start site region 49206
Ssc4d 5 135960220 to 135974535 14315 - protein coding gene scavenger receptor cysteine rich family, 4 domains
Tssr53786 5 135962265 to 135962274 9 - TSS region transcription start site region 53786
Tssr53787 5 135962275 to 135962328 53 - TSS region transcription start site region 53787
Cpgi16775 5 135962437 to 135963451 1014 CpG island CpG island 16775
Tssr49207 5 135962919 to 135962932 13 + TSS region transcription start site region 49207
Tssr49208 5 135962939 to 135962960 21 + TSS region transcription start site region 49208
Cpgi16776 5 135965461 to 135965928 467 CpG island CpG island 16776
Cpgi16777 5 135967804 to 135968141 337 CpG island CpG island 16777
Tssr1668 5 135974520 to 135974552 32 - TSS region transcription start site region 1668
Tssr49209 5 135980104 to 135980108 4 + TSS region transcription start site region 49209
Zp3 5 135980105 to 135988624 8519 + protein coding gene zona pellucida glycoprotein 3
Cpgi16778 5 135980313 to 135980644 331 CpG island CpG island 16778
Tssr49210 5 135984158 to 135984161 3 + TSS region transcription start site region 49210
Tssr49211 5 135984205 to 135984216 11 + TSS region transcription start site region 49211
Cpgi16779 5 135994678 to 135995250 572 CpG island CpG island 16779
Tssr49212 5 135994796 to 135994884 88 + TSS region transcription start site region 49212
Dtx2 5 135994800 to 136032872 38072 + protein coding gene deltex 2, E3 ubiquitin ligase
Tssr1669 5 136015186 to 136015203 17 + TSS region transcription start site region 1669
Upk3b 5 136038496 to 136044993 6497 + protein coding gene uroplakin 3B
Tssr49213 5 136038681 to 136038707 26 + TSS region transcription start site region 49213
Tssr49214 5 136038771 to 136038803 32 + TSS region transcription start site region 49214
Tssr1670 5 136039058 to 136039072 14 + TSS region transcription start site region 1670
Tssr49215 5 136039086 to 136039114 28 + TSS region transcription start site region 49215
Tssr49216 5 136054468 to 136054475 7 + TSS region transcription start site region 49216
Upk3bl 5 136054492 to 136064326 9834 + protein coding gene uroplakin 3B-like
Tssr49217 5 136057123 to 136057131 8 + TSS region transcription start site region 49217
Tssr49218 5 136057138 to 136057143 5 + TSS region transcription start site region 49218
Tssr49219 5 136057287 to 136057298 11 + TSS region transcription start site region 49219
Tssr49220 5 136057304 to 136057346 42 + TSS region transcription start site region 49220
Tssr49221 5 136057348 to 136057362 14 + TSS region transcription start site region 49221
Tssr1671 5 136060026 to 136060036 10 + TSS region transcription start site region 1671
Tssr49222 5 136060037 to 136060052 15 + TSS region transcription start site region 49222
Tssr49223 5 136060055 to 136060086 31 + TSS region transcription start site region 49223
Tssr49224 5 136060088 to 136060102 14 + TSS region transcription start site region 49224
Gm40347 5 136072494 to 136074804 2310 - lncRNA gene predicted gene, 40347
Cpgi16780 5 136083839 to 136084607 768 CpG island CpG island 16780
Tssr49225 5 136083911 to 136083920 9 + TSS region transcription start site region 49225
Rasa4 5 136083916 to 136111860 27944 + protein coding gene RAS p21 protein activator 4
Tssr49226 5 136083942 to 136084010 68 + TSS region transcription start site region 49226
Tssr49227 5 136084022 to 136084038 16 + TSS region transcription start site region 49227
Tssr49228 5 136084083 to 136084101 18 + TSS region transcription start site region 49228
Cpgi16781 5 136084897 to 136085090 193 CpG island CpG island 16781
Tssr49229 5 136089668 to 136089679 11 + TSS region transcription start site region 49229
Tssr49230 5 136089837 to 136089851 14 + TSS region transcription start site region 49230
Tssr49231 5 136089948 to 136089964 16 + TSS region transcription start site region 49231
Tssr49232 5 136091227 to 136091264 37 + TSS region transcription start site region 49232
Tssr49233 5 136093294 to 136093301 7 + TSS region transcription start site region 49233
Gm22214 5 136096260 to 136096431 171 - snRNA gene predicted gene, 22214
Tssr49234 5 136096446 to 136096455 9 + TSS region transcription start site region 49234
Tssr49235 5 136096870 to 136096884 14 + TSS region transcription start site region 49235
Tssr49236 5 136099615 to 136099621 6 + TSS region transcription start site region 49236
Cpgi16782 5 136102181 to 136102781 600 CpG island CpG island 16782
Tssr49237 5 136102323 to 136102378 55 + TSS region transcription start site region 49237
Gm15701 5 136102604 to 136104436 1832 - antisense lncRNA gene predicted gene 15701
Tssr49238 5 136103363 to 136103374 11 + TSS region transcription start site region 49238
Mir7035 5 136105522 to 136105603 81 + miRNA gene microRNA 7035
Tssr49239 5 136110540 to 136110563 23 + TSS region transcription start site region 49239
Tssr49240 5 136110573 to 136110597 24 + TSS region transcription start site region 49240
Tssr49241 5 136110606 to 136110629 23 + TSS region transcription start site region 49241
Cpgi16783 5 136116383 to 136117104 721 CpG island CpG island 16783
Tssr53788 5 136116518 to 136116564 46 - TSS region transcription start site region 53788
Tssr49242 5 136116678 to 136116740 62 + TSS region transcription start site region 49242
Polr2j 5 136116691 to 136122947 6256 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide J
Gm43604 5 136120966 to 136121670 704 - antisense lncRNA gene predicted gene 43604
Lrwd1 5 136123066 to 136136074 13008 - protein coding gene leucine-rich repeats and WD repeat domain containing 1
Cpgi16784 5 136135520 to 136136342 822 CpG island CpG island 16784
Tssr53789 5 136135989 to 136136087 98 - TSS region transcription start site region 53789
Tssr53790 5 136136117 to 136136124 7 - TSS region transcription start site region 53790
Tssr53791 5 136136126 to 136136134 8 - TSS region transcription start site region 53791
Tssr49243 5 136136137 to 136136174 37 + TSS region transcription start site region 49243
Alkbh4 5 136136146 to 136141615 5469 + protein coding gene alkB homolog 4, lysine demethylase
Tssr49244 5 136136202 to 136136211 9 + TSS region transcription start site region 49244
Tssr49245 5 136136223 to 136136256 33 + TSS region transcription start site region 49245
Tssr49246 5 136136271 to 136136274 3 + TSS region transcription start site region 49246
Cpgi16785 5 136140296 to 136140658 362 CpG island CpG island 16785
Orai2 5 136147456 to 136170656 23200 - protein coding gene ORAI calcium release-activated calcium modulator 2
Tssr53792 5 136160746 to 136160771 25 - TSS region transcription start site region 53792
Tssr53793 5 136160948 to 136160963 15 - TSS region transcription start site region 53793
Tssr53794 5 136161207 to 136161227 20 - TSS region transcription start site region 53794
Tssr53795 5 136161245 to 136161281 36 - TSS region transcription start site region 53795
Tssr53796 5 136161292 to 136161310 18 - TSS region transcription start site region 53796
Tssr53797 5 136161323 to 136161360 37 - TSS region transcription start site region 53797
Tssr53798 5 136161381 to 136161392 11 - TSS region transcription start site region 53798
Tssr53799 5 136161395 to 136161407 12 - TSS region transcription start site region 53799
Tssr53800 5 136161415 to 136161461 46 - TSS region transcription start site region 53800
D5Mit341 5 136161723 to 136161920 197 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 341
Tssr53801 5 136162022 to 136162033 11 - TSS region transcription start site region 53801
Tssr53802 5 136162058 to 136162071 13 - TSS region transcription start site region 53802
Tssr53803 5 136165042 to 136165058 16 - TSS region transcription start site region 53803
Tssr53804 5 136165089 to 136165100 11 - TSS region transcription start site region 53804
Tssr53805 5 136165227 to 136165232 5 - TSS region transcription start site region 53805
Tssr53806 5 136165242 to 136165253 11 - TSS region transcription start site region 53806
Tssr53807 5 136165835 to 136165851 16 - TSS region transcription start site region 53807
Tssr53808 5 136166095 to 136166101 6 - TSS region transcription start site region 53808
Tssr53809 5 136169993 to 136169997 4 - TSS region transcription start site region 53809
Cpgi16786 5 136170265 to 136171501 1236 CpG island CpG island 16786
Tssr53810 5 136170634 to 136170661 27 - TSS region transcription start site region 53810
Tssr53811 5 136170671 to 136170698 27 - TSS region transcription start site region 53811
Tssr53812 5 136171165 to 136171176 11 - TSS region transcription start site region 53812
Tssr53813 5 136171179 to 136171190 11 - TSS region transcription start site region 53813
Tssr49247 5 136171559 to 136171584 25 + TSS region transcription start site region 49247
Tssr53814 5 136171596 to 136171629 33 - TSS region transcription start site region 53814
Tssr1672 5 136179750 to 136179787 37 + TSS region transcription start site region 1672
Prkrip1 5 136180357 to 136198954 18597 - protein coding gene Prkr interacting protein 1 (IL11 inducible)
Cpgi16787 5 136198262 to 136199265 1003 CpG island CpG island 16787
Tssr53815 5 136198914 to 136198970 56 - TSS region transcription start site region 53815
Tssr49248 5 136199023 to 136199060 37 + TSS region transcription start site region 49248
Gm5050 5 136211012 to 136211786 774 - pseudogene predicted gene 5050
Tssr53816 5 136217365 to 136217372 7 - TSS region transcription start site region 53816
Tssr49249 5 136217551 to 136217578 27 + TSS region transcription start site region 49249
Sh2b2 5 136218147 to 136246556 28409 - protein coding gene SH2B adaptor protein 2
Tssr49250 5 136228421 to 136228428 7 + TSS region transcription start site region 49250
Cpgi16788 5 136231668 to 136232409 741 CpG island CpG island 16788
Tssr49251 5 136237028 to 136237061 33 + TSS region transcription start site region 49251
Cpgi16789 5 136237677 to 136237945 268 CpG island CpG island 16789
Cpgi16790 5 136243734 to 136245578 1844 CpG island CpG island 16790
Tssr53817 5 136244848 to 136244859 11 - TSS region transcription start site region 53817
Tssr53818 5 136244865 to 136244908 43 - TSS region transcription start site region 53818
Tssr53819 5 136244931 to 136244949 18 - TSS region transcription start site region 53819
Tssr53820 5 136245250 to 136245263 13 - TSS region transcription start site region 53820
Tssr53821 5 136245296 to 136245304 8 - TSS region transcription start site region 53821
Tssr49252 5 136245516 to 136245532 16 + TSS region transcription start site region 49252
Gm30408 5 136245534 to 136251363 5829 + lncRNA gene predicted gene, 30408
Tssr53822 5 136245983 to 136245986 3 - TSS region transcription start site region 53822
Tssr53823 5 136246518 to 136246542 24 - TSS region transcription start site region 53823
Tssr53824 5 136246553 to 136246558 5 - TSS region transcription start site region 53824
Tssr53825 5 136246559 to 136246570 11 - TSS region transcription start site region 53825
Tssr53826 5 136246579 to 136246598 19 - TSS region transcription start site region 53826
Tssr49253 5 136247473 to 136247505 32 + TSS region transcription start site region 49253
Cux1 5 136248135 to 136567490 319355 - protein coding gene cut-like homeobox 1
Cpgi16791 5 136252521 to 136252742 221 CpG island CpG island 16791
Tssr53827 5 136266714 to 136266727 13 - TSS region transcription start site region 53827
Tssr53828 5 136268796 to 136268801 5 - TSS region transcription start site region 53828
Tssr53829 5 136272693 to 136272699 6 - TSS region transcription start site region 53829
Cpgi16792 5 136274620 to 136275523 903 CpG island CpG island 16792
Tssr53830 5 136276258 to 136276260 2 - TSS region transcription start site region 53830
Tssr53831 5 136302501 to 136302511 10 - TSS region transcription start site region 53831
Tssr53832 5 136302515 to 136302537 22 - TSS region transcription start site region 53832
Tssr53833 5 136318427 to 136318432 5 - TSS region transcription start site region 53833
D5Mit265 5 136325395 to 136325533 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 265
A430110C17Rik 5 136345884 to 136350231 4347 - unclassified gene RIKEN cDNA A430110C17 gene