Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:135527251-135867254

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hip1 5 135406531 to 135545120 138589 - protein coding gene huntingtin interacting protein 1
Tssr53746 5 135527716 to 135527729 13 - TSS region transcription start site region 53746
Tssr53747 5 135543266 to 135543274 8 - TSS region transcription start site region 53747
Cpgi16757 5 135544458 to 135545949 1491 CpG island CpG island 16757
Tssr53748 5 135545059 to 135545091 32 - TSS region transcription start site region 53748
Tssr53749 5 135545108 to 135545128 20 - TSS region transcription start site region 53749
Cpgi16758 5 135558192 to 135558596 404 CpG island CpG island 16758
Ccl26 5 135560448 to 135563569 3121 - protein coding gene chemokine (C-C motif) ligand 26
Ccl24 5 135569937 to 135573049 3112 - protein coding gene chemokine (C-C motif) ligand 24
Tssr53750 5 135573002 to 135573029 27 - TSS region transcription start site region 53750
Tssr53751 5 135573036 to 135573051 15 - TSS region transcription start site region 53751
Tssr53752 5 135586119 to 135586130 11 - TSS region transcription start site region 53752
Tssr53753 5 135586138 to 135586154 16 - TSS region transcription start site region 53753
Gm43123 5 135613829 to 135617299 3470 - unclassified gene predicted gene 43123
Tssr53754 5 135623595 to 135623644 49 - TSS region transcription start site region 53754
Cpgi16759 5 135632487 to 135633113 626 CpG island CpG island 16759
Tssr49164 5 135632638 to 135632647 9 + TSS region transcription start site region 49164
Rhbdd2 5 135632654 to 135646376 13722 + protein coding gene rhomboid domain containing 2
Tssr49165 5 135632681 to 135632694 13 + TSS region transcription start site region 49165
Tssr49166 5 135632696 to 135632727 31 + TSS region transcription start site region 49166
Gm15607 5 135637139 to 135637496 357 - pseudogene predicted gene 15607
Tssr49167 5 135640808 to 135640812 4 + TSS region transcription start site region 49167
Gm21839 5 135643955 to 135644336 381 - pseudogene predicted gene, 21839
Gm43091 5 135653810 to 135672987 19177 - lincRNA gene predicted gene 43091
Tssr49168 5 135669977 to 135669984 7 + TSS region transcription start site region 49168
Tssr49169 5 135670027 to 135670042 15 + TSS region transcription start site region 49169
Por 5 135670040 to 135735326 65286 + protein coding gene P450 (cytochrome) oxidoreductase
Tssr49170 5 135671494 to 135671500 6 + TSS region transcription start site region 49170
Tssr49171 5 135674572 to 135674592 20 + TSS region transcription start site region 49171
Tssr49172 5 135685750 to 135685754 4 + TSS region transcription start site region 49172
Gm40345 5 135685941 to 135687772 1831 - lncRNA gene predicted gene, 40345
Cpgi16760 5 135688566 to 135689594 1028 CpG island CpG island 16760
Tssr49173 5 135689183 to 135689213 30 + TSS region transcription start site region 49173
Tssr49174 5 135697251 to 135697254 3 + TSS region transcription start site region 49174
Gm16061 5 135698163 to 135699019 856 - pseudogene predicted gene 16061
Tssr53755 5 135713476 to 135713497 21 - TSS region transcription start site region 53755
Tssr53756 5 135713515 to 135713523 8 - TSS region transcription start site region 53756
D5Mit60 5 135715435 to 135715564 129 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 60
Tssr49175 5 135715978 to 135715999 21 + TSS region transcription start site region 49175
Tssr49176 5 135725713 to 135725740 27 + TSS region transcription start site region 49176
Tssr49177 5 135725747 to 135725774 27 + TSS region transcription start site region 49177
Tssr49178 5 135728656 to 135728667 11 + TSS region transcription start site region 49178
Tssr49179 5 135730293 to 135730310 17 + TSS region transcription start site region 49179
Tssr49180 5 135732747 to 135732774 27 + TSS region transcription start site region 49180
Tssr49181 5 135733285 to 135733296 11 + TSS region transcription start site region 49181
Tssr49182 5 135733502 to 135733543 41 + TSS region transcription start site region 49182
Tssr49183 5 135733548 to 135733563 15 + TSS region transcription start site region 49183
Tssr49184 5 135733864 to 135733879 15 + TSS region transcription start site region 49184
Tssr49185 5 135734956 to 135734976 20 + TSS region transcription start site region 49185
Tssr53757 5 135735322 to 135735328 6 - TSS region transcription start site region 53757
Tmem120a 5 135735490 to 135744172 8682 - protein coding gene transmembrane protein 120A
Mir7034 5 135735806 to 135735889 83 - miRNA gene microRNA 7034
Cpgi16761 5 135736546 to 135737058 512 CpG island CpG island 16761
Cpgi16762 5 135743633 to 135744813 1180 CpG island CpG island 16762
Tssr53758 5 135744159 to 135744180 21 - TSS region transcription start site region 53758
Tssr53759 5 135744196 to 135744204 8 - TSS region transcription start site region 53759
Tssr53760 5 135744206 to 135744271 65 - TSS region transcription start site region 53760
Styxl1 5 135747220 to 135778385 31165 - protein coding gene serine/threonine/tyrosine interacting-like 1
Gm30205 5 135772803 to 135777984 5181 + lncRNA gene predicted gene, 30205
Tssr49186 5 135776626 to 135776636 10 + TSS region transcription start site region 49186
Cpgi16763 5 135777813 to 135779347 1534 CpG island CpG island 16763
Tssr53761 5 135778282 to 135778328 46 - TSS region transcription start site region 53761
Tssr53762 5 135778340 to 135778391 51 - TSS region transcription start site region 53762
Tssr49187 5 135778465 to 135778471 6 + TSS region transcription start site region 49187
Tssr49188 5 135778628 to 135778645 17 + TSS region transcription start site region 49188
Tssr49189 5 135778647 to 135778663 16 + TSS region transcription start site region 49189
Mdh2 5 135778649 to 135790386 11737 + protein coding gene malate dehydrogenase 2, NAD (mitochondrial)
Tssr49190 5 135778674 to 135778689 15 + TSS region transcription start site region 49190
Tssr49191 5 135778700 to 135778712 12 + TSS region transcription start site region 49191
Tssr49192 5 135783336 to 135783355 19 + TSS region transcription start site region 49192
Tssr49193 5 135783365 to 135783409 44 + TSS region transcription start site region 49193
Tssr49194 5 135789202 to 135789225 23 + TSS region transcription start site region 49194
Cpgi16764 5 135806679 to 135807065 386 CpG island CpG island 16764
Tssr49195 5 135806859 to 135806902 43 + TSS region transcription start site region 49195
Srrm3 5 135806890 to 135874772 67882 + protein coding gene serine/arginine repetitive matrix 3
D5Mit33 5 135829291 to 135829405 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 33
D5Mit33.2 5 135829408 to 135829531 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 33.2
Cpgi16765 5 135834840 to 135835641 801 CpG island CpG island 16765
Gm23268 5 135837295 to 135837372 77 - miRNA gene predicted gene, 23268
Srrm3os 5 135843057 to 135844946 1889 - antisense lncRNA gene serine/arginine repetitive matrix 3, opposite strand
Tssr49196 5 135851420 to 135851451 31 + TSS region transcription start site region 49196
Cpgi16766 5 135851955 to 135852566 611 CpG island CpG island 16766
Cpgi16767 5 135856874 to 135857512 638 CpG island CpG island 16767
Tssr49197 5 135862854 to 135862859 5 + TSS region transcription start site region 49197
Tssr49198 5 135863020 to 135863032 12 + TSS region transcription start site region 49198
Tssr49199 5 135863042 to 135863054 12 + TSS region transcription start site region 49199