Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:135408864-136058879

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171 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hip1 5 135406531 to 135545120 138589 - protein coding gene huntingtin interacting protein 1
Tssr49162 5 135416586 to 135416589 3 + TSS region transcription start site region 49162
Cpgi16754 5 135431258 to 135432230 972 CpG island CpG island 16754
Cpgi16755 5 135432527 to 135433080 553 CpG island CpG island 16755
Tssr53742 5 135460444 to 135460452 8 - TSS region transcription start site region 53742
Tssr49163 5 135463680 to 135463681 1 + TSS region transcription start site region 49163
Tssr53743 5 135465914 to 135465941 27 - TSS region transcription start site region 53743
Gm42731 5 135471779 to 135473419 1640 - unclassified gene predicted gene 42731
Cpgi16756 5 135488632 to 135489729 1097 CpG island CpG island 16756
Tssr53744 5 135489196 to 135489237 41 - TSS region transcription start site region 53744
Tssr53745 5 135489248 to 135489277 29 - TSS region transcription start site region 53745
Tssr53746 5 135527716 to 135527729 13 - TSS region transcription start site region 53746
Tssr53747 5 135543266 to 135543274 8 - TSS region transcription start site region 53747
Cpgi16757 5 135544458 to 135545949 1491 CpG island CpG island 16757
Tssr53748 5 135545059 to 135545091 32 - TSS region transcription start site region 53748
Tssr53749 5 135545108 to 135545128 20 - TSS region transcription start site region 53749
Cpgi16758 5 135558192 to 135558596 404 CpG island CpG island 16758
Ccl26 5 135560448 to 135563569 3121 - protein coding gene chemokine (C-C motif) ligand 26
Ccl24 5 135569937 to 135573049 3112 - protein coding gene chemokine (C-C motif) ligand 24
Tssr53750 5 135573002 to 135573029 27 - TSS region transcription start site region 53750
Tssr53751 5 135573036 to 135573051 15 - TSS region transcription start site region 53751
Tssr53752 5 135586119 to 135586130 11 - TSS region transcription start site region 53752
Tssr53753 5 135586138 to 135586154 16 - TSS region transcription start site region 53753
Gm43123 5 135613829 to 135617299 3470 - unclassified gene predicted gene 43123
Tssr53754 5 135623595 to 135623644 49 - TSS region transcription start site region 53754
Cpgi16759 5 135632487 to 135633113 626 CpG island CpG island 16759
Tssr49164 5 135632638 to 135632647 9 + TSS region transcription start site region 49164
Rhbdd2 5 135632654 to 135646376 13722 + protein coding gene rhomboid domain containing 2
Tssr49165 5 135632681 to 135632694 13 + TSS region transcription start site region 49165
Tssr49166 5 135632696 to 135632727 31 + TSS region transcription start site region 49166
Gm15607 5 135637139 to 135637496 357 - pseudogene predicted gene 15607
Tssr49167 5 135640808 to 135640812 4 + TSS region transcription start site region 49167
Gm21839 5 135643955 to 135644336 381 - pseudogene predicted gene, 21839
Gm43091 5 135653810 to 135672987 19177 - lincRNA gene predicted gene 43091
Tssr49168 5 135669977 to 135669984 7 + TSS region transcription start site region 49168
Tssr49169 5 135670027 to 135670042 15 + TSS region transcription start site region 49169
Por 5 135670040 to 135735326 65286 + protein coding gene P450 (cytochrome) oxidoreductase
Tssr49170 5 135671494 to 135671500 6 + TSS region transcription start site region 49170
Tssr49171 5 135674572 to 135674592 20 + TSS region transcription start site region 49171
Tssr49172 5 135685750 to 135685754 4 + TSS region transcription start site region 49172
Gm40345 5 135685941 to 135687772 1831 - lncRNA gene predicted gene, 40345
Cpgi16760 5 135688566 to 135689594 1028 CpG island CpG island 16760
Tssr49173 5 135689183 to 135689213 30 + TSS region transcription start site region 49173
Tssr49174 5 135697251 to 135697254 3 + TSS region transcription start site region 49174
Gm16061 5 135698163 to 135699019 856 - pseudogene predicted gene 16061
Tssr53755 5 135713476 to 135713497 21 - TSS region transcription start site region 53755
Tssr53756 5 135713515 to 135713523 8 - TSS region transcription start site region 53756
D5Mit60 5 135715435 to 135715564 129 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 60
Tssr49175 5 135715978 to 135715999 21 + TSS region transcription start site region 49175
Tssr49176 5 135725713 to 135725740 27 + TSS region transcription start site region 49176
Tssr49177 5 135725747 to 135725774 27 + TSS region transcription start site region 49177
Tssr49178 5 135728656 to 135728667 11 + TSS region transcription start site region 49178
Tssr49179 5 135730293 to 135730310 17 + TSS region transcription start site region 49179
Tssr49180 5 135732747 to 135732774 27 + TSS region transcription start site region 49180
Tssr49181 5 135733285 to 135733296 11 + TSS region transcription start site region 49181
Tssr49182 5 135733502 to 135733543 41 + TSS region transcription start site region 49182
Tssr49183 5 135733548 to 135733563 15 + TSS region transcription start site region 49183
Tssr49184 5 135733864 to 135733879 15 + TSS region transcription start site region 49184
Tssr49185 5 135734956 to 135734976 20 + TSS region transcription start site region 49185
Tssr53757 5 135735322 to 135735328 6 - TSS region transcription start site region 53757
Tmem120a 5 135735490 to 135744172 8682 - protein coding gene transmembrane protein 120A
Mir7034 5 135735806 to 135735889 83 - miRNA gene microRNA 7034
Cpgi16761 5 135736546 to 135737058 512 CpG island CpG island 16761
Cpgi16762 5 135743633 to 135744813 1180 CpG island CpG island 16762
Tssr53758 5 135744159 to 135744180 21 - TSS region transcription start site region 53758
Tssr53759 5 135744196 to 135744204 8 - TSS region transcription start site region 53759
Tssr53760 5 135744206 to 135744271 65 - TSS region transcription start site region 53760
Styxl1 5 135747220 to 135778385 31165 - protein coding gene serine/threonine/tyrosine interacting-like 1
Gm30205 5 135772803 to 135777984 5181 + lncRNA gene predicted gene, 30205
Tssr49186 5 135776626 to 135776636 10 + TSS region transcription start site region 49186
Cpgi16763 5 135777813 to 135779347 1534 CpG island CpG island 16763
Tssr53761 5 135778282 to 135778328 46 - TSS region transcription start site region 53761
Tssr53762 5 135778340 to 135778391 51 - TSS region transcription start site region 53762
Tssr49187 5 135778465 to 135778471 6 + TSS region transcription start site region 49187
Tssr49188 5 135778628 to 135778645 17 + TSS region transcription start site region 49188
Tssr49189 5 135778647 to 135778663 16 + TSS region transcription start site region 49189
Mdh2 5 135778649 to 135790386 11737 + protein coding gene malate dehydrogenase 2, NAD (mitochondrial)
Tssr49190 5 135778674 to 135778689 15 + TSS region transcription start site region 49190
Tssr49191 5 135778700 to 135778712 12 + TSS region transcription start site region 49191
Tssr49192 5 135783336 to 135783355 19 + TSS region transcription start site region 49192
Tssr49193 5 135783365 to 135783409 44 + TSS region transcription start site region 49193
Tssr49194 5 135789202 to 135789225 23 + TSS region transcription start site region 49194
Cpgi16764 5 135806679 to 135807065 386 CpG island CpG island 16764
Tssr49195 5 135806859 to 135806902 43 + TSS region transcription start site region 49195
Srrm3 5 135806890 to 135874772 67882 + protein coding gene serine/arginine repetitive matrix 3
D5Mit33 5 135829291 to 135829405 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 33
D5Mit33.2 5 135829408 to 135829531 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 33.2
Cpgi16765 5 135834840 to 135835641 801 CpG island CpG island 16765
Gm23268 5 135837295 to 135837372 77 - miRNA gene predicted gene, 23268
Srrm3os 5 135843057 to 135844946 1889 - antisense lncRNA gene serine/arginine repetitive matrix 3, opposite strand
Tssr49196 5 135851420 to 135851451 31 + TSS region transcription start site region 49196
Cpgi16766 5 135851955 to 135852566 611 CpG island CpG island 16766
Cpgi16767 5 135856874 to 135857512 638 CpG island CpG island 16767
Tssr49197 5 135862854 to 135862859 5 + TSS region transcription start site region 49197
Tssr49198 5 135863020 to 135863032 12 + TSS region transcription start site region 49198
Tssr49199 5 135863042 to 135863054 12 + TSS region transcription start site region 49199
Cpgi16768 5 135867683 to 135869355 1672 CpG island CpG island 16768
Cpgi16769 5 135873085 to 135873268 183 CpG island CpG island 16769
Gm22450 5 135875657 to 135875763 106 + snRNA gene predicted gene, 22450
Cpgi16770 5 135887710 to 135888086 376 CpG island CpG island 16770
Tssr49200 5 135887905 to 135887923 18 + TSS region transcription start site region 49200
Hspb1 5 135887919 to 135889563 1644 + protein coding gene heat shock protein 1
Tssr49201 5 135887940 to 135887970 30 + TSS region transcription start site region 49201
Tssr49202 5 135887975 to 135887986 11 + TSS region transcription start site region 49202
Tssr49203 5 135887988 to 135888011 23 + TSS region transcription start site region 49203
Cpgi16771 5 135888410 to 135888874 464 CpG island CpG island 16771
Tssr49204 5 135889038 to 135889042 4 + TSS region transcription start site region 49204
Gm42533 5 135896330 to 135896486 156 - pseudogene predicted gene 42533
Cpgi16772 5 135903551 to 135904008 457 CpG island CpG island 16772
Ywhag 5 135908409 to 135934616 26207 - protein coding gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
Tssr53763 5 135908888 to 135909006 118 - TSS region transcription start site region 53763
Tssr53764 5 135909234 to 135909250 16 - TSS region transcription start site region 53764
Tssr53765 5 135909471 to 135909486 15 - TSS region transcription start site region 53765
Tssr53766 5 135910140 to 135910166 26 - TSS region transcription start site region 53766
Tssr53767 5 135910580 to 135910598 18 - TSS region transcription start site region 53767
Tssr53768 5 135910618 to 135910655 37 - TSS region transcription start site region 53768
Tssr53769 5 135910681 to 135910692 11 - TSS region transcription start site region 53769
Tssr53770 5 135910781 to 135910794 13 - TSS region transcription start site region 53770
Tssr53771 5 135910870 to 135910887 17 - TSS region transcription start site region 53771
Tssr53772 5 135910888 to 135910912 24 - TSS region transcription start site region 53772
Tssr53773 5 135911304 to 135911322 18 - TSS region transcription start site region 53773
Tssr53774 5 135911346 to 135911360 14 - TSS region transcription start site region 53774
Tssr53775 5 135911448 to 135911466 18 - TSS region transcription start site region 53775
Tssr53776 5 135911473 to 135911484 11 - TSS region transcription start site region 53776
Tssr53777 5 135911546 to 135911558 12 - TSS region transcription start site region 53777
Tssr53778 5 135911570 to 135911583 13 - TSS region transcription start site region 53778
D5Mit32 5 135920110 to 135920232 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 32
Bglq14 5 135920110 to 135920232 122 QTL body growth late QTL 14
Gm40346 5 135930673 to 135934316 3643 - lncRNA gene predicted gene, 40346
Tssr53779 5 135933700 to 135933705 5 - TSS region transcription start site region 53779
Cpgi16773 5 135933938 to 135935080 1142 CpG island CpG island 16773
Tssr53780 5 135934557 to 135934568 11 - TSS region transcription start site region 53780
Tssr53781 5 135934590 to 135934613 23 - TSS region transcription start site region 53781
Tssr53782 5 135934619 to 135934633 14 - TSS region transcription start site region 53782
Tssr49205 5 135935089 to 135935120 31 + TSS region transcription start site region 49205
Tssr53783 5 135957510 to 135957521 11 - TSS region transcription start site region 53783
Tssr53784 5 135957531 to 135957571 40 - TSS region transcription start site region 53784
Tssr53785 5 135957580 to 135957590 10 - TSS region transcription start site region 53785
Cpgi16774 5 135957609 to 135957940 331 CpG island CpG island 16774
Tssr1667 5 135957882 to 135957899 17 + TSS region transcription start site region 1667
Tssr49206 5 135958103 to 135958107 4 + TSS region transcription start site region 49206
Ssc4d 5 135960220 to 135974535 14315 - protein coding gene scavenger receptor cysteine rich family, 4 domains
Tssr53786 5 135962265 to 135962274 9 - TSS region transcription start site region 53786
Tssr53787 5 135962275 to 135962328 53 - TSS region transcription start site region 53787
Cpgi16775 5 135962437 to 135963451 1014 CpG island CpG island 16775
Tssr49207 5 135962919 to 135962932 13 + TSS region transcription start site region 49207
Tssr49208 5 135962939 to 135962960 21 + TSS region transcription start site region 49208
Cpgi16776 5 135965461 to 135965928 467 CpG island CpG island 16776
Cpgi16777 5 135967804 to 135968141 337 CpG island CpG island 16777
Tssr1668 5 135974520 to 135974552 32 - TSS region transcription start site region 1668
Tssr49209 5 135980104 to 135980108 4 + TSS region transcription start site region 49209
Zp3 5 135980105 to 135988624 8519 + protein coding gene zona pellucida glycoprotein 3
Cpgi16778 5 135980313 to 135980644 331 CpG island CpG island 16778
Tssr49210 5 135984158 to 135984161 3 + TSS region transcription start site region 49210
Tssr49211 5 135984205 to 135984216 11 + TSS region transcription start site region 49211
Cpgi16779 5 135994678 to 135995250 572 CpG island CpG island 16779
Tssr49212 5 135994796 to 135994884 88 + TSS region transcription start site region 49212
Dtx2 5 135994800 to 136032872 38072 + protein coding gene deltex 2, E3 ubiquitin ligase
Tssr1669 5 136015186 to 136015203 17 + TSS region transcription start site region 1669
Upk3b 5 136038496 to 136044993 6497 + protein coding gene uroplakin 3B
Tssr49213 5 136038681 to 136038707 26 + TSS region transcription start site region 49213
Tssr49214 5 136038771 to 136038803 32 + TSS region transcription start site region 49214
Tssr1670 5 136039058 to 136039072 14 + TSS region transcription start site region 1670
Tssr49215 5 136039086 to 136039114 28 + TSS region transcription start site region 49215
Tssr49216 5 136054468 to 136054475 7 + TSS region transcription start site region 49216
Upk3bl 5 136054492 to 136064326 9834 + protein coding gene uroplakin 3B-like
Tssr49217 5 136057123 to 136057131 8 + TSS region transcription start site region 49217
Tssr49218 5 136057138 to 136057143 5 + TSS region transcription start site region 49218
Tssr49219 5 136057287 to 136057298 11 + TSS region transcription start site region 49219
Tssr49220 5 136057304 to 136057346 42 + TSS region transcription start site region 49220
Tssr49221 5 136057348 to 136057362 14 + TSS region transcription start site region 49221