Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:135248295-135473005

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5Limk1-Trim50)2Uta 5 134656039 to 135368005 711966 chromosomal deletion deletion, Chr 5, Uta Francke 2
Fzd9 5 135248938 to 135251047 2109 - protein coding gene frizzled class receptor 9
Cpgi16747 5 135249640 to 135251659 2019 CpG island CpG island 16747
Tssr53729 5 135251209 to 135251242 33 - TSS region transcription start site region 53729
Tssr53730 5 135251244 to 135251277 33 - TSS region transcription start site region 53730
9430007M09Rik 5 135264326 to 135265129 803 + unclassified gene RIKEN cDNA 9430007M09 gene
Cpgi16748 5 135276504 to 135276956 452 CpG island CpG island 16748
Fkbp6 5 135291704 to 135350044 58340 - protein coding gene FK506 binding protein 6
Cpgi16749 5 135349580 to 135350302 722 CpG island CpG island 16749
Tssr53731 5 135349997 to 135350040 43 - TSS region transcription start site region 53731
Tssr53732 5 135350042 to 135350049 7 - TSS region transcription start site region 53732
Tssr53733 5 135351269 to 135351280 11 - TSS region transcription start site region 53733
Tssr53734 5 135351288 to 135351302 14 - TSS region transcription start site region 53734
Tssr53735 5 135351436 to 135351438 2 - TSS region transcription start site region 53735
Tssr49157 5 135351899 to 135351927 28 + TSS region transcription start site region 49157
Tssr1666 5 135351954 to 135351961 7 + TSS region transcription start site region 1666
Trim50 5 135353295 to 135368005 14710 + protein coding gene tripartite motif-containing 50
Cpgi16750 5 135353315 to 135353911 596 CpG island CpG island 16750
Cpgi16751 5 135369722 to 135370606 884 CpG island CpG island 16751
Tssr49158 5 135369942 to 135369997 55 + TSS region transcription start site region 49158
Nsun5 5 135369953 to 135376805 6852 + protein coding gene NOL1/NOP2/Sun domain family, member 5
Pom121 5 135376141 to 135394546 18405 - protein coding gene nuclear pore membrane protein 121
Mir7033 5 135383730 to 135383810 80 - miRNA gene microRNA 7033
Cpgi16752 5 135393835 to 135394931 1096 CpG island CpG island 16752
Tssr53736 5 135394174 to 135394196 22 - TSS region transcription start site region 53736
Tssr53737 5 135394205 to 135394240 35 - TSS region transcription start site region 53737
Tssr53738 5 135394246 to 135394269 23 - TSS region transcription start site region 53738
Tssr53739 5 135394499 to 135394558 59 - TSS region transcription start site region 53739
Cpgi16753 5 135404695 to 135404980 285 CpG island CpG island 16753
Tssr53740 5 135404769 to 135404813 44 - TSS region transcription start site region 53740
Tssr53741 5 135404842 to 135404854 12 - TSS region transcription start site region 53741
Tssr49159 5 135404893 to 135404906 13 + TSS region transcription start site region 49159
Tssr49160 5 135404909 to 135404920 11 + TSS region transcription start site region 49160
Tssr49161 5 135404928 to 135404936 8 + TSS region transcription start site region 49161
Hip1 5 135406531 to 135545120 138589 - protein coding gene huntingtin interacting protein 1
Tssr49162 5 135416586 to 135416589 3 + TSS region transcription start site region 49162
Cpgi16754 5 135431258 to 135432230 972 CpG island CpG island 16754
Cpgi16755 5 135432527 to 135433080 553 CpG island CpG island 16755
Tssr53742 5 135460444 to 135460452 8 - TSS region transcription start site region 53742
Tssr49163 5 135463680 to 135463681 1 + TSS region transcription start site region 49163
Tssr53743 5 135465914 to 135465941 27 - TSS region transcription start site region 53743
Gm42731 5 135471779 to 135473419 1640 - unclassified gene predicted gene 42731