Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:135154909-135654920

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5Limk1-Trim50)2Uta 5 134656039 to 135368005 711966 chromosomal deletion deletion, Chr 5, Uta Francke 2
Tbl2 5 135149424 to 135163873 14449 + protein coding gene transducin (beta)-like 2
D5Mit283 5 135155614 to 135155774 160 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 283
Cpgi16745 5 135168054 to 135169092 1038 CpG island CpG island 16745
Tssr49142 5 135168351 to 135168373 22 + TSS region transcription start site region 49142
Bcl7b 5 135168372 to 135181852 13480 + protein coding gene B cell CLL/lymphoma 7B
Tssr49143 5 135168382 to 135168442 60 + TSS region transcription start site region 49143
Tssr49144 5 135168443 to 135168502 59 + TSS region transcription start site region 49144
Tssr49145 5 135168525 to 135168534 9 + TSS region transcription start site region 49145
Tssr49146 5 135168922 to 135168955 33 + TSS region transcription start site region 49146
Tssr49147 5 135169017 to 135169023 6 + TSS region transcription start site region 49147
Cpgi16746 5 135186658 to 135188229 1571 CpG island CpG island 16746
Tssr49148 5 135187251 to 135187269 18 + TSS region transcription start site region 49148
Tssr49149 5 135187304 to 135187333 29 + TSS region transcription start site region 49149
Baz1b 5 135187323 to 135246131 58808 + protein coding gene bromodomain adjacent to zinc finger domain, 1B
Tssr49150 5 135187348 to 135187359 11 + TSS region transcription start site region 49150
Tssr49151 5 135187507 to 135187595 88 + TSS region transcription start site region 49151
Tssr49152 5 135188461 to 135188473 12 + TSS region transcription start site region 49152
Gm25315 5 135207988 to 135208108 120 + miRNA gene predicted gene, 25315
Tssr49153 5 135217498 to 135217509 11 + TSS region transcription start site region 49153
Tssr49154 5 135217768 to 135217787 19 + TSS region transcription start site region 49154
Tssr49155 5 135218028 to 135218046 18 + TSS region transcription start site region 49155
Tssr49156 5 135230282 to 135230312 30 + TSS region transcription start site region 49156
Fzd9 5 135248938 to 135251047 2109 - protein coding gene frizzled class receptor 9
Cpgi16747 5 135249640 to 135251659 2019 CpG island CpG island 16747
Tssr53729 5 135251209 to 135251242 33 - TSS region transcription start site region 53729
Tssr53730 5 135251244 to 135251277 33 - TSS region transcription start site region 53730
9430007M09Rik 5 135264326 to 135265129 803 + unclassified gene RIKEN cDNA 9430007M09 gene
Cpgi16748 5 135276504 to 135276956 452 CpG island CpG island 16748
Fkbp6 5 135291704 to 135350044 58340 - protein coding gene FK506 binding protein 6
Cpgi16749 5 135349580 to 135350302 722 CpG island CpG island 16749
Tssr53731 5 135349997 to 135350040 43 - TSS region transcription start site region 53731
Tssr53732 5 135350042 to 135350049 7 - TSS region transcription start site region 53732
Tssr53733 5 135351269 to 135351280 11 - TSS region transcription start site region 53733
Tssr53734 5 135351288 to 135351302 14 - TSS region transcription start site region 53734
Tssr53735 5 135351436 to 135351438 2 - TSS region transcription start site region 53735
Tssr49157 5 135351899 to 135351927 28 + TSS region transcription start site region 49157
Tssr1666 5 135351954 to 135351961 7 + TSS region transcription start site region 1666
Trim50 5 135353295 to 135368005 14710 + protein coding gene tripartite motif-containing 50
Cpgi16750 5 135353315 to 135353911 596 CpG island CpG island 16750
Cpgi16751 5 135369722 to 135370606 884 CpG island CpG island 16751
Tssr49158 5 135369942 to 135369997 55 + TSS region transcription start site region 49158
Nsun5 5 135369953 to 135376805 6852 + protein coding gene NOL1/NOP2/Sun domain family, member 5
Pom121 5 135376141 to 135394546 18405 - protein coding gene nuclear pore membrane protein 121
Mir7033 5 135383730 to 135383810 80 - miRNA gene microRNA 7033
Cpgi16752 5 135393835 to 135394931 1096 CpG island CpG island 16752
Tssr53736 5 135394174 to 135394196 22 - TSS region transcription start site region 53736
Tssr53737 5 135394205 to 135394240 35 - TSS region transcription start site region 53737
Tssr53738 5 135394246 to 135394269 23 - TSS region transcription start site region 53738
Tssr53739 5 135394499 to 135394558 59 - TSS region transcription start site region 53739
Cpgi16753 5 135404695 to 135404980 285 CpG island CpG island 16753
Tssr53740 5 135404769 to 135404813 44 - TSS region transcription start site region 53740
Tssr53741 5 135404842 to 135404854 12 - TSS region transcription start site region 53741
Tssr49159 5 135404893 to 135404906 13 + TSS region transcription start site region 49159
Tssr49160 5 135404909 to 135404920 11 + TSS region transcription start site region 49160
Tssr49161 5 135404928 to 135404936 8 + TSS region transcription start site region 49161
Hip1 5 135406531 to 135545120 138589 - protein coding gene huntingtin interacting protein 1
Tssr49162 5 135416586 to 135416589 3 + TSS region transcription start site region 49162
Cpgi16754 5 135431258 to 135432230 972 CpG island CpG island 16754
Cpgi16755 5 135432527 to 135433080 553 CpG island CpG island 16755
Tssr53742 5 135460444 to 135460452 8 - TSS region transcription start site region 53742
Tssr49163 5 135463680 to 135463681 1 + TSS region transcription start site region 49163
Tssr53743 5 135465914 to 135465941 27 - TSS region transcription start site region 53743
Gm42731 5 135471779 to 135473419 1640 - unclassified gene predicted gene 42731
Cpgi16756 5 135488632 to 135489729 1097 CpG island CpG island 16756
Tssr53744 5 135489196 to 135489237 41 - TSS region transcription start site region 53744
Tssr53745 5 135489248 to 135489277 29 - TSS region transcription start site region 53745
Tssr53746 5 135527716 to 135527729 13 - TSS region transcription start site region 53746
Tssr53747 5 135543266 to 135543274 8 - TSS region transcription start site region 53747
Cpgi16757 5 135544458 to 135545949 1491 CpG island CpG island 16757
Tssr53748 5 135545059 to 135545091 32 - TSS region transcription start site region 53748
Tssr53749 5 135545108 to 135545128 20 - TSS region transcription start site region 53749
Cpgi16758 5 135558192 to 135558596 404 CpG island CpG island 16758
Ccl26 5 135560448 to 135563569 3121 - protein coding gene chemokine (C-C motif) ligand 26
Ccl24 5 135569937 to 135573049 3112 - protein coding gene chemokine (C-C motif) ligand 24
Tssr53750 5 135573002 to 135573029 27 - TSS region transcription start site region 53750
Tssr53751 5 135573036 to 135573051 15 - TSS region transcription start site region 53751
Tssr53752 5 135586119 to 135586130 11 - TSS region transcription start site region 53752
Tssr53753 5 135586138 to 135586154 16 - TSS region transcription start site region 53753
Gm43123 5 135613829 to 135617299 3470 - unclassified gene predicted gene 43123
Tssr53754 5 135623595 to 135623644 49 - TSS region transcription start site region 53754
Cpgi16759 5 135632487 to 135633113 626 CpG island CpG island 16759
Tssr49164 5 135632638 to 135632647 9 + TSS region transcription start site region 49164
Rhbdd2 5 135632654 to 135646376 13722 + protein coding gene rhomboid domain containing 2
Tssr49165 5 135632681 to 135632694 13 + TSS region transcription start site region 49165
Tssr49166 5 135632696 to 135632727 31 + TSS region transcription start site region 49166
Gm15607 5 135637139 to 135637496 357 - pseudogene predicted gene 15607
Tssr49167 5 135640808 to 135640812 4 + TSS region transcription start site region 49167
Gm21839 5 135643955 to 135644336 381 - pseudogene predicted gene, 21839
Gm43091 5 135653810 to 135672987 19177 - lincRNA gene predicted gene 43091