Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:135036436-135666438

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5Limk1-Trim50)2Uta 5 134656039 to 135368005 711966 chromosomal deletion deletion, Chr 5, Uta Francke 2
Stx1a 5 135023482 to 135051100 27618 + protein coding gene syntaxin 1A (brain)
Tssr49131 5 135041125 to 135041165 40 + TSS region transcription start site region 49131
Cpgi16738 5 135041936 to 135042219 283 CpG island CpG island 16738
Bud23 5 135052957 to 135064666 11709 - protein coding gene BUD23, rRNA methyltransferase and ribosome maturation factor
Tssr1665 5 135053405 to 135053428 23 - TSS region transcription start site region 1665
Gm25492 5 135053988 to 135054116 128 - snoRNA gene predicted gene, 25492
D5Mit325 5 135059703 to 135059822 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 325
Cpgi16739 5 135063695 to 135064946 1251 CpG island CpG island 16739
Tssr53723 5 135064051 to 135064060 9 - TSS region transcription start site region 53723
Tssr53724 5 135064063 to 135064116 53 - TSS region transcription start site region 53724
Dnajc30 5 135064206 to 135065365 1159 + protein coding gene DnaJ heat shock protein family (Hsp40) member C30
Tssr49132 5 135064220 to 135064254 34 + TSS region transcription start site region 49132
Vps37d 5 135072900 to 135078266 5366 - protein coding gene vacuolar protein sorting 37D
Cpgi16740 5 135077704 to 135078668 964 CpG island CpG island 16740
Tssr53725 5 135078224 to 135078260 36 - TSS region transcription start site region 53725
Tssr53726 5 135078276 to 135078311 35 - TSS region transcription start site region 53726
Tssr53727 5 135078314 to 135078346 32 - TSS region transcription start site region 53727
Cpgi16741 5 135089417 to 135090136 719 CpG island CpG island 16741
Tssr49133 5 135089884 to 135089896 12 + TSS region transcription start site region 49133
Mlxipl 5 135089891 to 135138382 48491 + protein coding gene MLX interacting protein-like
Tssr49134 5 135089916 to 135089930 14 + TSS region transcription start site region 49134
Cpgi16742 5 135106600 to 135108326 1726 CpG island CpG island 16742
Tssr49135 5 135106881 to 135106918 37 + TSS region transcription start site region 49135
Tssr49136 5 135121748 to 135121782 34 + TSS region transcription start site region 49136
Gm43500 5 135122410 to 135123293 883 - antisense lncRNA gene predicted gene 43500
Tssr49137 5 135123734 to 135123760 26 + TSS region transcription start site region 49137
Tssr49138 5 135126420 to 135126427 7 + TSS region transcription start site region 49138
Tssr49139 5 135128659 to 135128670 11 + TSS region transcription start site region 49139
Tssr49140 5 135132331 to 135132343 12 + TSS region transcription start site region 49140
Tssr53728 5 135132462 to 135132467 5 - TSS region transcription start site region 53728
Cpgi16743 5 135133572 to 135134592 1020 CpG island CpG island 16743
D5Mit323 5 135141125 to 135141228 103 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 323
Cpgi16744 5 135149036 to 135150141 1105 CpG island CpG island 16744
Tbl2 5 135149424 to 135163873 14449 + protein coding gene transducin (beta)-like 2
Tssr49141 5 135149657 to 135149739 82 + TSS region transcription start site region 49141
D5Mit283 5 135155614 to 135155774 160 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 283
Cpgi16745 5 135168054 to 135169092 1038 CpG island CpG island 16745
Tssr49142 5 135168351 to 135168373 22 + TSS region transcription start site region 49142
Bcl7b 5 135168372 to 135181852 13480 + protein coding gene B cell CLL/lymphoma 7B
Tssr49143 5 135168382 to 135168442 60 + TSS region transcription start site region 49143
Tssr49144 5 135168443 to 135168502 59 + TSS region transcription start site region 49144
Tssr49145 5 135168525 to 135168534 9 + TSS region transcription start site region 49145
Tssr49146 5 135168922 to 135168955 33 + TSS region transcription start site region 49146
Tssr49147 5 135169017 to 135169023 6 + TSS region transcription start site region 49147
Cpgi16746 5 135186658 to 135188229 1571 CpG island CpG island 16746
Tssr49148 5 135187251 to 135187269 18 + TSS region transcription start site region 49148
Tssr49149 5 135187304 to 135187333 29 + TSS region transcription start site region 49149
Baz1b 5 135187323 to 135246131 58808 + protein coding gene bromodomain adjacent to zinc finger domain, 1B
Tssr49150 5 135187348 to 135187359 11 + TSS region transcription start site region 49150
Tssr49151 5 135187507 to 135187595 88 + TSS region transcription start site region 49151
Tssr49152 5 135188461 to 135188473 12 + TSS region transcription start site region 49152
Gm25315 5 135207988 to 135208108 120 + miRNA gene predicted gene, 25315
Tssr49153 5 135217498 to 135217509 11 + TSS region transcription start site region 49153
Tssr49154 5 135217768 to 135217787 19 + TSS region transcription start site region 49154
Tssr49155 5 135218028 to 135218046 18 + TSS region transcription start site region 49155
Tssr49156 5 135230282 to 135230312 30 + TSS region transcription start site region 49156
Fzd9 5 135248938 to 135251047 2109 - protein coding gene frizzled class receptor 9
Cpgi16747 5 135249640 to 135251659 2019 CpG island CpG island 16747
Tssr53729 5 135251209 to 135251242 33 - TSS region transcription start site region 53729
Tssr53730 5 135251244 to 135251277 33 - TSS region transcription start site region 53730
9430007M09Rik 5 135264326 to 135265129 803 + unclassified gene RIKEN cDNA 9430007M09 gene
Cpgi16748 5 135276504 to 135276956 452 CpG island CpG island 16748
Fkbp6 5 135291704 to 135350044 58340 - protein coding gene FK506 binding protein 6
Cpgi16749 5 135349580 to 135350302 722 CpG island CpG island 16749
Tssr53731 5 135349997 to 135350040 43 - TSS region transcription start site region 53731
Tssr53732 5 135350042 to 135350049 7 - TSS region transcription start site region 53732
Tssr53733 5 135351269 to 135351280 11 - TSS region transcription start site region 53733
Tssr53734 5 135351288 to 135351302 14 - TSS region transcription start site region 53734
Tssr53735 5 135351436 to 135351438 2 - TSS region transcription start site region 53735
Tssr49157 5 135351899 to 135351927 28 + TSS region transcription start site region 49157
Tssr1666 5 135351954 to 135351961 7 + TSS region transcription start site region 1666
Trim50 5 135353295 to 135368005 14710 + protein coding gene tripartite motif-containing 50
Cpgi16750 5 135353315 to 135353911 596 CpG island CpG island 16750
Cpgi16751 5 135369722 to 135370606 884 CpG island CpG island 16751
Tssr49158 5 135369942 to 135369997 55 + TSS region transcription start site region 49158
Nsun5 5 135369953 to 135376805 6852 + protein coding gene NOL1/NOP2/Sun domain family, member 5
Pom121 5 135376141 to 135394546 18405 - protein coding gene nuclear pore membrane protein 121
Mir7033 5 135383730 to 135383810 80 - miRNA gene microRNA 7033
Cpgi16752 5 135393835 to 135394931 1096 CpG island CpG island 16752
Tssr53736 5 135394174 to 135394196 22 - TSS region transcription start site region 53736
Tssr53737 5 135394205 to 135394240 35 - TSS region transcription start site region 53737
Tssr53738 5 135394246 to 135394269 23 - TSS region transcription start site region 53738
Tssr53739 5 135394499 to 135394558 59 - TSS region transcription start site region 53739
Cpgi16753 5 135404695 to 135404980 285 CpG island CpG island 16753
Tssr53740 5 135404769 to 135404813 44 - TSS region transcription start site region 53740
Tssr53741 5 135404842 to 135404854 12 - TSS region transcription start site region 53741
Tssr49159 5 135404893 to 135404906 13 + TSS region transcription start site region 49159
Tssr49160 5 135404909 to 135404920 11 + TSS region transcription start site region 49160
Tssr49161 5 135404928 to 135404936 8 + TSS region transcription start site region 49161
Hip1 5 135406531 to 135545120 138589 - protein coding gene huntingtin interacting protein 1
Tssr49162 5 135416586 to 135416589 3 + TSS region transcription start site region 49162
Cpgi16754 5 135431258 to 135432230 972 CpG island CpG island 16754
Cpgi16755 5 135432527 to 135433080 553 CpG island CpG island 16755
Tssr53742 5 135460444 to 135460452 8 - TSS region transcription start site region 53742
Tssr49163 5 135463680 to 135463681 1 + TSS region transcription start site region 49163
Tssr53743 5 135465914 to 135465941 27 - TSS region transcription start site region 53743
Gm42731 5 135471779 to 135473419 1640 - unclassified gene predicted gene 42731
Cpgi16756 5 135488632 to 135489729 1097 CpG island CpG island 16756
Tssr53744 5 135489196 to 135489237 41 - TSS region transcription start site region 53744
Tssr53745 5 135489248 to 135489277 29 - TSS region transcription start site region 53745
Tssr53746 5 135527716 to 135527729 13 - TSS region transcription start site region 53746
Tssr53747 5 135543266 to 135543274 8 - TSS region transcription start site region 53747
Cpgi16757 5 135544458 to 135545949 1491 CpG island CpG island 16757
Tssr53748 5 135545059 to 135545091 32 - TSS region transcription start site region 53748
Tssr53749 5 135545108 to 135545128 20 - TSS region transcription start site region 53749
Cpgi16758 5 135558192 to 135558596 404 CpG island CpG island 16758
Ccl26 5 135560448 to 135563569 3121 - protein coding gene chemokine (C-C motif) ligand 26
Ccl24 5 135569937 to 135573049 3112 - protein coding gene chemokine (C-C motif) ligand 24
Tssr53750 5 135573002 to 135573029 27 - TSS region transcription start site region 53750
Tssr53751 5 135573036 to 135573051 15 - TSS region transcription start site region 53751
Tssr53752 5 135586119 to 135586130 11 - TSS region transcription start site region 53752
Tssr53753 5 135586138 to 135586154 16 - TSS region transcription start site region 53753
Gm43123 5 135613829 to 135617299 3470 - unclassified gene predicted gene 43123
Tssr53754 5 135623595 to 135623644 49 - TSS region transcription start site region 53754
Cpgi16759 5 135632487 to 135633113 626 CpG island CpG island 16759
Tssr49164 5 135632638 to 135632647 9 + TSS region transcription start site region 49164
Rhbdd2 5 135632654 to 135646376 13722 + protein coding gene rhomboid domain containing 2
Tssr49165 5 135632681 to 135632694 13 + TSS region transcription start site region 49165
Tssr49166 5 135632696 to 135632727 31 + TSS region transcription start site region 49166
Gm15607 5 135637139 to 135637496 357 - pseudogene predicted gene 15607
Tssr49167 5 135640808 to 135640812 4 + TSS region transcription start site region 49167
Gm21839 5 135643955 to 135644336 381 - pseudogene predicted gene, 21839
Gm43091 5 135653810 to 135672987 19177 - lincRNA gene predicted gene 43091