Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:134373240-134553449

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25 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gtf2ird1 5 134357661 to 134456716 99055 - protein coding gene general transcription factor II I repeat domain-containing 1
Tssr53640 5 134386215 to 134386219 4 - TSS region transcription start site region 53640
Tssr1658 5 134394835 to 134394876 41 + TSS region transcription start site region 1658
n-R5s178 5 134416239 to 134416352 113 + rRNA gene nuclear encoded rRNA 5S 178
Tssr53641 5 134434366 to 134434370 4 - TSS region transcription start site region 53641
Gm26340 5 134448574 to 134448672 98 + miRNA gene predicted gene, 26340
Gm42882 5 134455990 to 134458030 2040 + antisense lncRNA gene predicted gene 42882
Cpgi16719 5 134456101 to 134457012 911 CpG island CpG island 16719
Tssr53642 5 134456227 to 134456263 36 - TSS region transcription start site region 53642
Tssr53643 5 134456702 to 134456785 83 - TSS region transcription start site region 53643
Gm16020 5 134463240 to 134463449 209 + pseudogene predicted gene 16020
Gm42885 5 134481233 to 134485446 4213 - unclassified gene predicted gene 42885
D5Lec1 5 134485533 to 134486110 577 DNA segment DNA segment, Chr 5, Laboratory of Experimental Carcinogenesis 1
Clip2 5 134489383 to 134552434 63051 - protein coding gene CAP-GLY domain containing linker protein 2
2700029L08Rik 5 134519325 to 134520789 1464 - unclassified gene RIKEN cDNA 2700029L08 gene
Tssr53644 5 134520311 to 134520324 13 - TSS region transcription start site region 53644
Cpgi16720 5 134522742 to 134523035 293 CpG island CpG island 16720
Tssr53645 5 134549956 to 134549964 8 - TSS region transcription start site region 53645
Cpgi16721 5 134551405 to 134552784 1379 CpG island CpG island 16721
Gm42884 5 134552057 to 134558495 6438 + antisense lncRNA gene predicted gene 42884
Tssr53646 5 134552139 to 134552233 94 - TSS region transcription start site region 53646
Tssr53647 5 134552241 to 134552282 41 - TSS region transcription start site region 53647
Tssr53648 5 134552381 to 134552413 32 - TSS region transcription start site region 53648
Tssr53649 5 134552414 to 134552444 30 - TSS region transcription start site region 53649
Tssr53650 5 134552453 to 134552476 23 - TSS region transcription start site region 53650