Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:134267656-134546716

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gtf2i 5 134237834 to 134314760 76926 - protein coding gene general transcription factor II I
Gm43481 5 134267065 to 134270736 3671 - unclassified gene predicted gene 43481
Tssr53622 5 134269217 to 134269221 4 - TSS region transcription start site region 53622
Tssr53623 5 134270714 to 134270718 4 - TSS region transcription start site region 53623
Tssr53624 5 134275046 to 134275051 5 - TSS region transcription start site region 53624
Tssr53625 5 134276993 to 134276999 6 - TSS region transcription start site region 53625
Gm43480 5 134298798 to 134299213 415 - sense intronic lncRNA gene predicted gene 43480
Tssr53626 5 134306582 to 134306591 9 - TSS region transcription start site region 53626
Tssr53627 5 134306603 to 134306616 13 - TSS region transcription start site region 53627
Tssr53628 5 134312545 to 134312549 4 - TSS region transcription start site region 53628
Tssr53629 5 134313215 to 134313219 4 - TSS region transcription start site region 53629
Cpgi16718 5 134313393 to 134315158 1765 CpG island CpG island 16718
Tssr49086 5 134313646 to 134313664 18 + TSS region transcription start site region 49086
Tssr49087 5 134313673 to 134313696 23 + TSS region transcription start site region 49087
Tssr53630 5 134313787 to 134313820 33 - TSS region transcription start site region 53630
Tssr49088 5 134313979 to 134313991 12 + TSS region transcription start site region 49088
Tssr53631 5 134314406 to 134314424 18 - TSS region transcription start site region 53631
Tssr53632 5 134314443 to 134314452 9 - TSS region transcription start site region 53632
Tssr53633 5 134314456 to 134314473 17 - TSS region transcription start site region 53633
Tssr53634 5 134314485 to 134314499 14 - TSS region transcription start site region 53634
Tssr53635 5 134314514 to 134314548 34 - TSS region transcription start site region 53635
Tssr53636 5 134314558 to 134314571 13 - TSS region transcription start site region 53636
Tssr53637 5 134314637 to 134314676 39 - TSS region transcription start site region 53637
Tssr53638 5 134314678 to 134314721 43 - TSS region transcription start site region 53638
Tssr49089 5 134314946 to 134314992 46 + TSS region transcription start site region 49089
Tssr1657 5 134314956 to 134314958 2 - TSS region transcription start site region 1657
Gm46924 5 134322282 to 134324967 2685 + lncRNA gene predicted gene, 46924
Mir3965 5 134326454 to 134326522 68 + miRNA gene microRNA 3965
Tssr53639 5 134344229 to 134344242 13 - TSS region transcription start site region 53639
Gm46925 5 134348501 to 134349846 1345 + lncRNA gene predicted gene, 46925
Gm7033 5 134353278 to 134355199 1921 + pseudogene predicted gene 7033
Gtf2ird1 5 134357661 to 134456716 99055 - protein coding gene general transcription factor II I repeat domain-containing 1
Tssr53640 5 134386215 to 134386219 4 - TSS region transcription start site region 53640
Tssr1658 5 134394835 to 134394876 41 + TSS region transcription start site region 1658
n-R5s178 5 134416239 to 134416352 113 + rRNA gene nuclear encoded rRNA 5S 178
Tssr53641 5 134434366 to 134434370 4 - TSS region transcription start site region 53641
Gm26340 5 134448574 to 134448672 98 + miRNA gene predicted gene, 26340
Gm42882 5 134455990 to 134458030 2040 + antisense lncRNA gene predicted gene 42882
Cpgi16719 5 134456101 to 134457012 911 CpG island CpG island 16719
Tssr53642 5 134456227 to 134456263 36 - TSS region transcription start site region 53642
Tssr53643 5 134456702 to 134456785 83 - TSS region transcription start site region 53643
Gm16020 5 134463240 to 134463449 209 + pseudogene predicted gene 16020
Gm42885 5 134481233 to 134485446 4213 - unclassified gene predicted gene 42885
D5Lec1 5 134485533 to 134486110 577 DNA segment DNA segment, Chr 5, Laboratory of Experimental Carcinogenesis 1
Clip2 5 134489383 to 134552434 63051 - protein coding gene CAP-GLY domain containing linker protein 2
2700029L08Rik 5 134519325 to 134520789 1464 - unclassified gene RIKEN cDNA 2700029L08 gene
Tssr53644 5 134520311 to 134520324 13 - TSS region transcription start site region 53644
Cpgi16720 5 134522742 to 134523035 293 CpG island CpG island 16720