Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:134241702-134671785

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gtf2i 5 134237834 to 134314760 76926 - protein coding gene general transcription factor II I
Tssr53617 5 134244174 to 134244233 59 - TSS region transcription start site region 53617
Tssr53618 5 134256916 to 134256944 28 - TSS region transcription start site region 53618
Tssr53619 5 134264428 to 134264433 5 - TSS region transcription start site region 53619
Tssr53620 5 134266077 to 134266078 1 - TSS region transcription start site region 53620
Tssr53621 5 134266584 to 134266618 34 - TSS region transcription start site region 53621
Gm43481 5 134267065 to 134270736 3671 - unclassified gene predicted gene 43481
Tssr53622 5 134269217 to 134269221 4 - TSS region transcription start site region 53622
Tssr53623 5 134270714 to 134270718 4 - TSS region transcription start site region 53623
Tssr53624 5 134275046 to 134275051 5 - TSS region transcription start site region 53624
Tssr53625 5 134276993 to 134276999 6 - TSS region transcription start site region 53625
Gm43480 5 134298798 to 134299213 415 - sense intronic lncRNA gene predicted gene 43480
Tssr53626 5 134306582 to 134306591 9 - TSS region transcription start site region 53626
Tssr53627 5 134306603 to 134306616 13 - TSS region transcription start site region 53627
Tssr53628 5 134312545 to 134312549 4 - TSS region transcription start site region 53628
Tssr53629 5 134313215 to 134313219 4 - TSS region transcription start site region 53629
Cpgi16718 5 134313393 to 134315158 1765 CpG island CpG island 16718
Tssr49086 5 134313646 to 134313664 18 + TSS region transcription start site region 49086
Tssr49087 5 134313673 to 134313696 23 + TSS region transcription start site region 49087
Tssr53630 5 134313787 to 134313820 33 - TSS region transcription start site region 53630
Tssr49088 5 134313979 to 134313991 12 + TSS region transcription start site region 49088
Tssr53631 5 134314406 to 134314424 18 - TSS region transcription start site region 53631
Tssr53632 5 134314443 to 134314452 9 - TSS region transcription start site region 53632
Tssr53633 5 134314456 to 134314473 17 - TSS region transcription start site region 53633
Tssr53634 5 134314485 to 134314499 14 - TSS region transcription start site region 53634
Tssr53635 5 134314514 to 134314548 34 - TSS region transcription start site region 53635
Tssr53636 5 134314558 to 134314571 13 - TSS region transcription start site region 53636
Tssr53637 5 134314637 to 134314676 39 - TSS region transcription start site region 53637
Tssr53638 5 134314678 to 134314721 43 - TSS region transcription start site region 53638
Tssr49089 5 134314946 to 134314992 46 + TSS region transcription start site region 49089
Tssr1657 5 134314956 to 134314958 2 - TSS region transcription start site region 1657
Gm46924 5 134322282 to 134324967 2685 + lncRNA gene predicted gene, 46924
Mir3965 5 134326454 to 134326522 68 + miRNA gene microRNA 3965
Tssr53639 5 134344229 to 134344242 13 - TSS region transcription start site region 53639
Gm46925 5 134348501 to 134349846 1345 + lncRNA gene predicted gene, 46925
Gm7033 5 134353278 to 134355199 1921 + pseudogene predicted gene 7033
Gtf2ird1 5 134357661 to 134456716 99055 - protein coding gene general transcription factor II I repeat domain-containing 1
Tssr53640 5 134386215 to 134386219 4 - TSS region transcription start site region 53640
Tssr1658 5 134394835 to 134394876 41 + TSS region transcription start site region 1658
n-R5s178 5 134416239 to 134416352 113 + rRNA gene nuclear encoded rRNA 5S 178
Tssr53641 5 134434366 to 134434370 4 - TSS region transcription start site region 53641
Gm26340 5 134448574 to 134448672 98 + miRNA gene predicted gene, 26340
Gm42882 5 134455990 to 134458030 2040 + antisense lncRNA gene predicted gene 42882
Cpgi16719 5 134456101 to 134457012 911 CpG island CpG island 16719
Tssr53642 5 134456227 to 134456263 36 - TSS region transcription start site region 53642
Tssr53643 5 134456702 to 134456785 83 - TSS region transcription start site region 53643
Gm16020 5 134463240 to 134463449 209 + pseudogene predicted gene 16020
Gm42885 5 134481233 to 134485446 4213 - unclassified gene predicted gene 42885
D5Lec1 5 134485533 to 134486110 577 DNA segment DNA segment, Chr 5, Laboratory of Experimental Carcinogenesis 1
Clip2 5 134489383 to 134552434 63051 - protein coding gene CAP-GLY domain containing linker protein 2
2700029L08Rik 5 134519325 to 134520789 1464 - unclassified gene RIKEN cDNA 2700029L08 gene
Tssr53644 5 134520311 to 134520324 13 - TSS region transcription start site region 53644
Cpgi16720 5 134522742 to 134523035 293 CpG island CpG island 16720
Tssr53645 5 134549956 to 134549964 8 - TSS region transcription start site region 53645
Cpgi16721 5 134551405 to 134552784 1379 CpG island CpG island 16721
Gm42884 5 134552057 to 134558495 6438 + antisense lncRNA gene predicted gene 42884
Tssr53646 5 134552139 to 134552233 94 - TSS region transcription start site region 53646
Tssr53647 5 134552241 to 134552282 41 - TSS region transcription start site region 53647
Tssr53648 5 134552381 to 134552413 32 - TSS region transcription start site region 53648
Tssr53649 5 134552414 to 134552444 30 - TSS region transcription start site region 53649
Tssr53650 5 134552453 to 134552476 23 - TSS region transcription start site region 53650
Cpgi16722 5 134555534 to 134555719 185 CpG island CpG island 16722
Syna 5 134558146 to 134560171 2025 - protein coding gene syncytin a
Cpgi16723 5 134558503 to 134558891 388 CpG island CpG island 16723
Tssr53651 5 134563834 to 134563854 20 - TSS region transcription start site region 53651
Tssr53652 5 134564070 to 134564087 17 - TSS region transcription start site region 53652
Tssr53653 5 134565546 to 134565561 15 - TSS region transcription start site region 53653
Mir7228 5 134572076 to 134572114 38 + miRNA gene microRNA 7228
Cpgi16724 5 134582586 to 134583246 660 CpG island CpG island 16724
Rfc2 5 134582690 to 134598328 15638 + protein coding gene replication factor C (activator 1) 2
Tssr49090 5 134582720 to 134582727 7 + TSS region transcription start site region 49090
Tssr49091 5 134582732 to 134582784 52 + TSS region transcription start site region 49091
Tssr49092 5 134582793 to 134582804 11 + TSS region transcription start site region 49092
Tssr49093 5 134583086 to 134583094 8 + TSS region transcription start site region 49093
Lat2 5 134600022 to 134615025 15003 - protein coding gene linker for activation of T cells family, member 2
Tssr49094 5 134600238 to 134600288 50 + TSS region transcription start site region 49094
Tssr53654 5 134607314 to 134607319 5 - TSS region transcription start site region 53654
Tssr53655 5 134611858 to 134611876 18 - TSS region transcription start site region 53655
Tssr53656 5 134611885 to 134611897 12 - TSS region transcription start site region 53656
Tssr49095 5 134612008 to 134612051 43 + TSS region transcription start site region 49095
Tssr49096 5 134613943 to 134613956 13 + TSS region transcription start site region 49096
Tssr49097 5 134613991 to 134613999 8 + TSS region transcription start site region 49097
Tssr53657 5 134614953 to 134615029 76 - TSS region transcription start site region 53657
Eif4h 5 134619872 to 134639409 19537 - protein coding gene eukaryotic translation initiation factor 4H
Tssr53658 5 134627707 to 134627750 43 - TSS region transcription start site region 53658
Tssr53659 5 134631785 to 134631787 2 - TSS region transcription start site region 53659
Cpgi16725 5 134638505 to 134639873 1368 CpG island CpG island 16725
Tssr53660 5 134639028 to 134639044 16 - TSS region transcription start site region 53660
Tssr53661 5 134639311 to 134639348 37 - TSS region transcription start site region 53661
Tssr53662 5 134639473 to 134639480 7 - TSS region transcription start site region 53662
Tssr53663 5 134639486 to 134639522 36 - TSS region transcription start site region 53663
Tssr53664 5 134639541 to 134639546 5 - TSS region transcription start site region 53664
Del(5Limk1-Trim50)2Uta 5 134656039 to 135368005 711966 chromosomal deletion deletion, Chr 5, Uta Francke 2
Limk1 5 134656039 to 134688598 32559 - protein coding gene LIM-domain containing, protein kinase
Tssr53665 5 134657533 to 134657582 49 - TSS region transcription start site region 53665
Tssr53666 5 134670367 to 134670395 28 - TSS region transcription start site region 53666