MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 5:13387486-13787489

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Sema3a	5	13125414 to 13602565	477151	+	protein coding gene	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
Tssr45180	5	13398680 to 13398696	16	+	TSS region	transcription start site region 45180
Tssr45181	5	13398704 to 13398726	22	+	TSS region	transcription start site region 45181
Tssr45182	5	13398828 to 13398871	43	+	TSS region	transcription start site region 45182
Cpgi15549	5	13398978 to 13399582	604		CpG island	CpG island 15549
Tssr45183	5	13399325 to 13399382	57	+	TSS region	transcription start site region 45183
Tssr45184	5	13399387 to 13399415	28	+	TSS region	transcription start site region 45184
Tssr45185	5	13399495 to 13399519	24	+	TSS region	transcription start site region 45185
Tssr45186	5	13399751 to 13399765	14	+	TSS region	transcription start site region 45186
Gm43130	5	13481028 to 13484934	3906	+	unclassified gene	predicted gene 43130
Gm42676	5	13525723 to 13528408	2685	+	unclassified gene	predicted gene 42676
Gm42675	5	13548694 to 13552728	4034	+	unclassified gene	predicted gene 42675
Tssr1423	5	13587486 to 13587489	3	+	TSS region	transcription start site region 1423
Gm43719	5	13604035 to 13606233	2198	+	unclassified gene	predicted gene 43719
Gm43718	5	13615959 to 13617815	1856	-	unclassified gene	predicted gene 43718
Gm4751	5	13763618 to 13764722	1104	+	pseudogene	predicted gene 4751
Gm6647	5	13768662 to 13771887	3225	+	pseudogene	predicted gene 6647
4930568A13Rik	5	13774326 to 13808284	33958	-	lincRNA gene	RIKEN cDNA 4930568A13 gene