Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:133653725-134714779

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166 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr53602 5 133790794 to 133790806 12 - TSS region transcription start site region 53602
Tssr53603 5 133790808 to 133790815 7 - TSS region transcription start site region 53603
Tssr53604 5 133790844 to 133790851 7 - TSS region transcription start site region 53604
Gm7902 5 133841573 to 133842519 946 - pseudogene predicted gene 7902
D5Mit220 5 133851536 to 133851682 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 220
Gm2404 5 133919159 to 133920002 843 - pseudogene predicted gene 2404
D5Mit141 5 133996313 to 133996442 129 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 141
Gm40339 5 134045832 to 134089532 43700 - lncRNA gene predicted gene, 40339
Gm40340 5 134050792 to 134054317 3525 + lncRNA gene predicted gene, 40340
1700030N18Rik 5 134090486 to 134091451 965 - unclassified gene RIKEN cDNA 1700030N18 gene
Gm15627 5 134098412 to 134099208 796 - lincRNA gene predicted gene 15627
Cpgi16713 5 134099120 to 134100136 1016 CpG island CpG island 16713
Tssr49079 5 134099692 to 134099695 3 + TSS region transcription start site region 49079
Tssr49080 5 134099704 to 134099760 56 + TSS region transcription start site region 49080
Castor2 5 134099748 to 134141782 42034 + protein coding gene cytosolic arginine sensor for mTORC1 subunit 2
Tssr49081 5 134099767 to 134099797 30 + TSS region transcription start site region 49081
Tssr1656 5 134139565 to 134139566 1 - TSS region transcription start site region 1656
Tssr49082 5 134141612 to 134141627 15 + TSS region transcription start site region 49082
Rcc1l 5 134148054 to 134176774 28720 - protein coding gene reculator of chromosome condensation 1 like
D5Mit428 5 134150428 to 134150551 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 428
Cpgi16714 5 134175893 to 134176917 1024 CpG island CpG island 16714
Tssr49083 5 134176340 to 134176376 36 + TSS region transcription start site region 49083
B230377A18Rik 5 134176346 to 134177709 1363 + unclassified gene RIKEN cDNA B230377A18 gene
Tssr53605 5 134176707 to 134176716 9 - TSS region transcription start site region 53605
Tssr53606 5 134176720 to 134176784 64 - TSS region transcription start site region 53606
Cpgi16715 5 134183725 to 134184779 1054 CpG island CpG island 16715
Tssr49084 5 134183998 to 134184046 48 + TSS region transcription start site region 49084
Gtf2ird2 5 134184019 to 134218146 34127 + protein coding gene GTF2I repeat domain containing 2
Tssr53607 5 134184398 to 134184424 26 - TSS region transcription start site region 53607
Tssr53608 5 134184427 to 134184439 12 - TSS region transcription start site region 53608
Gm24139 5 134204469 to 134204756 287 + unclassified non-coding RNA gene predicted gene, 24139
Cpgi16716 5 134216174 to 134217650 1476 CpG island CpG island 16716
Ncf1 5 134220053 to 134229625 9572 - protein coding gene neutrophil cytosolic factor 1
Cpgi16717 5 134221536 to 134222588 1052 CpG island CpG island 16717
Tssr53609 5 134221670 to 134221689 19 - TSS region transcription start site region 53609
Tssr53610 5 134222099 to 134222119 20 - TSS region transcription start site region 53610
Tssr49085 5 134227276 to 134227298 22 + TSS region transcription start site region 49085
Tssr53611 5 134228250 to 134228264 14 - TSS region transcription start site region 53611
Tssr53612 5 134229581 to 134229599 18 - TSS region transcription start site region 53612
Tssr53613 5 134231488 to 134231528 40 - TSS region transcription start site region 53613
Tssr53614 5 134232234 to 134232250 16 - TSS region transcription start site region 53614
Tssr53615 5 134232255 to 134232264 9 - TSS region transcription start site region 53615
Tssr53616 5 134236890 to 134236926 36 - TSS region transcription start site region 53616
Del(5Gtf2i-Limk1)1Uta 5 134237834 to 134688598 450764 chromosomal deletion deletion, Chr 5, Uta Francke 1
Gtf2i 5 134237834 to 134314760 76926 - protein coding gene general transcription factor II I
Tssr53617 5 134244174 to 134244233 59 - TSS region transcription start site region 53617
Tssr53618 5 134256916 to 134256944 28 - TSS region transcription start site region 53618
Tssr53619 5 134264428 to 134264433 5 - TSS region transcription start site region 53619
Tssr53620 5 134266077 to 134266078 1 - TSS region transcription start site region 53620
Tssr53621 5 134266584 to 134266618 34 - TSS region transcription start site region 53621
Gm43481 5 134267065 to 134270736 3671 - unclassified gene predicted gene 43481
Tssr53622 5 134269217 to 134269221 4 - TSS region transcription start site region 53622
Tssr53623 5 134270714 to 134270718 4 - TSS region transcription start site region 53623
Tssr53624 5 134275046 to 134275051 5 - TSS region transcription start site region 53624
Tssr53625 5 134276993 to 134276999 6 - TSS region transcription start site region 53625
Gm43480 5 134298798 to 134299213 415 - sense intronic lncRNA gene predicted gene 43480
Tssr53626 5 134306582 to 134306591 9 - TSS region transcription start site region 53626
Tssr53627 5 134306603 to 134306616 13 - TSS region transcription start site region 53627
Tssr53628 5 134312545 to 134312549 4 - TSS region transcription start site region 53628
Tssr53629 5 134313215 to 134313219 4 - TSS region transcription start site region 53629
Cpgi16718 5 134313393 to 134315158 1765 CpG island CpG island 16718
Tssr49086 5 134313646 to 134313664 18 + TSS region transcription start site region 49086
Tssr49087 5 134313673 to 134313696 23 + TSS region transcription start site region 49087
Tssr53630 5 134313787 to 134313820 33 - TSS region transcription start site region 53630
Tssr49088 5 134313979 to 134313991 12 + TSS region transcription start site region 49088
Tssr53631 5 134314406 to 134314424 18 - TSS region transcription start site region 53631
Tssr53632 5 134314443 to 134314452 9 - TSS region transcription start site region 53632
Tssr53633 5 134314456 to 134314473 17 - TSS region transcription start site region 53633
Tssr53634 5 134314485 to 134314499 14 - TSS region transcription start site region 53634
Tssr53635 5 134314514 to 134314548 34 - TSS region transcription start site region 53635
Tssr53636 5 134314558 to 134314571 13 - TSS region transcription start site region 53636
Tssr53637 5 134314637 to 134314676 39 - TSS region transcription start site region 53637
Tssr53638 5 134314678 to 134314721 43 - TSS region transcription start site region 53638
Tssr49089 5 134314946 to 134314992 46 + TSS region transcription start site region 49089
Tssr1657 5 134314956 to 134314958 2 - TSS region transcription start site region 1657
Gm46924 5 134322282 to 134324967 2685 + lncRNA gene predicted gene, 46924
Mir3965 5 134326454 to 134326522 68 + miRNA gene microRNA 3965
Tssr53639 5 134344229 to 134344242 13 - TSS region transcription start site region 53639
Gm46925 5 134348501 to 134349846 1345 + lncRNA gene predicted gene, 46925
Gm7033 5 134353278 to 134355199 1921 + pseudogene predicted gene 7033
Gtf2ird1 5 134357661 to 134456716 99055 - protein coding gene general transcription factor II I repeat domain-containing 1
Tssr53640 5 134386215 to 134386219 4 - TSS region transcription start site region 53640
Tssr1658 5 134394835 to 134394876 41 + TSS region transcription start site region 1658
n-R5s178 5 134416239 to 134416352 113 + rRNA gene nuclear encoded rRNA 5S 178
Tssr53641 5 134434366 to 134434370 4 - TSS region transcription start site region 53641
Gm26340 5 134448574 to 134448672 98 + miRNA gene predicted gene, 26340
Gm42882 5 134455990 to 134458030 2040 + antisense lncRNA gene predicted gene 42882
Cpgi16719 5 134456101 to 134457012 911 CpG island CpG island 16719
Tssr53642 5 134456227 to 134456263 36 - TSS region transcription start site region 53642
Tssr53643 5 134456702 to 134456785 83 - TSS region transcription start site region 53643
Gm16020 5 134463240 to 134463449 209 + pseudogene predicted gene 16020
Gm42885 5 134481233 to 134485446 4213 - unclassified gene predicted gene 42885
D5Lec1 5 134485533 to 134486110 577 DNA segment DNA segment, Chr 5, Laboratory of Experimental Carcinogenesis 1
Clip2 5 134489383 to 134552434 63051 - protein coding gene CAP-GLY domain containing linker protein 2
2700029L08Rik 5 134519325 to 134520789 1464 - unclassified gene RIKEN cDNA 2700029L08 gene
Tssr53644 5 134520311 to 134520324 13 - TSS region transcription start site region 53644
Cpgi16720 5 134522742 to 134523035 293 CpG island CpG island 16720
Tssr53645 5 134549956 to 134549964 8 - TSS region transcription start site region 53645
Cpgi16721 5 134551405 to 134552784 1379 CpG island CpG island 16721
Gm42884 5 134552057 to 134558495 6438 + antisense lncRNA gene predicted gene 42884
Tssr53646 5 134552139 to 134552233 94 - TSS region transcription start site region 53646
Tssr53647 5 134552241 to 134552282 41 - TSS region transcription start site region 53647
Tssr53648 5 134552381 to 134552413 32 - TSS region transcription start site region 53648
Tssr53649 5 134552414 to 134552444 30 - TSS region transcription start site region 53649
Tssr53650 5 134552453 to 134552476 23 - TSS region transcription start site region 53650
Cpgi16722 5 134555534 to 134555719 185 CpG island CpG island 16722
Syna 5 134558146 to 134560171 2025 - protein coding gene syncytin a
Cpgi16723 5 134558503 to 134558891 388 CpG island CpG island 16723
Tssr53651 5 134563834 to 134563854 20 - TSS region transcription start site region 53651
Tssr53652 5 134564070 to 134564087 17 - TSS region transcription start site region 53652
Tssr53653 5 134565546 to 134565561 15 - TSS region transcription start site region 53653
Mir7228 5 134572076 to 134572114 38 + miRNA gene microRNA 7228
Cpgi16724 5 134582586 to 134583246 660 CpG island CpG island 16724
Rfc2 5 134582690 to 134598328 15638 + protein coding gene replication factor C (activator 1) 2
Tssr49090 5 134582720 to 134582727 7 + TSS region transcription start site region 49090
Tssr49091 5 134582732 to 134582784 52 + TSS region transcription start site region 49091
Tssr49092 5 134582793 to 134582804 11 + TSS region transcription start site region 49092
Tssr49093 5 134583086 to 134583094 8 + TSS region transcription start site region 49093
Lat2 5 134600022 to 134615025 15003 - protein coding gene linker for activation of T cells family, member 2
Tssr49094 5 134600238 to 134600288 50 + TSS region transcription start site region 49094
Tssr53654 5 134607314 to 134607319 5 - TSS region transcription start site region 53654
Tssr53655 5 134611858 to 134611876 18 - TSS region transcription start site region 53655
Tssr53656 5 134611885 to 134611897 12 - TSS region transcription start site region 53656
Tssr49095 5 134612008 to 134612051 43 + TSS region transcription start site region 49095
Tssr49096 5 134613943 to 134613956 13 + TSS region transcription start site region 49096
Tssr49097 5 134613991 to 134613999 8 + TSS region transcription start site region 49097
Tssr53657 5 134614953 to 134615029 76 - TSS region transcription start site region 53657
Eif4h 5 134619872 to 134639409 19537 - protein coding gene eukaryotic translation initiation factor 4H
Tssr53658 5 134627707 to 134627750 43 - TSS region transcription start site region 53658
Tssr53659 5 134631785 to 134631787 2 - TSS region transcription start site region 53659
Cpgi16725 5 134638505 to 134639873 1368 CpG island CpG island 16725
Tssr53660 5 134639028 to 134639044 16 - TSS region transcription start site region 53660
Tssr53661 5 134639311 to 134639348 37 - TSS region transcription start site region 53661
Tssr53662 5 134639473 to 134639480 7 - TSS region transcription start site region 53662
Tssr53663 5 134639486 to 134639522 36 - TSS region transcription start site region 53663
Tssr53664 5 134639541 to 134639546 5 - TSS region transcription start site region 53664
Del(5Limk1-Trim50)2Uta 5 134656039 to 135368005 711966 chromosomal deletion deletion, Chr 5, Uta Francke 2
Limk1 5 134656039 to 134688598 32559 - protein coding gene LIM-domain containing, protein kinase
Tssr53665 5 134657533 to 134657582 49 - TSS region transcription start site region 53665
Tssr53666 5 134670367 to 134670395 28 - TSS region transcription start site region 53666
Gm10369 5 134676490 to 134680145 3655 + antisense lncRNA gene predicted gene 10369
Tssr49098 5 134676544 to 134676563 19 + TSS region transcription start site region 49098
Tssr49099 5 134676689 to 134676713 24 + TSS region transcription start site region 49099
Tssr53667 5 134678190 to 134678254 64 - TSS region transcription start site region 53667
Cpgi16726 5 134688058 to 134689388 1330 CpG island CpG island 16726
Tssr53668 5 134688556 to 134688563 7 - TSS region transcription start site region 53668
Tssr53669 5 134688568 to 134688587 19 - TSS region transcription start site region 53669
Tssr53670 5 134688595 to 134688637 42 - TSS region transcription start site region 53670
Tssr53671 5 134688639 to 134688650 11 - TSS region transcription start site region 53671
Eln 5 134702593 to 134747323 44730 - protein coding gene elastin
Tssr53672 5 134703015 to 134703025 10 - TSS region transcription start site region 53672
Tssr53673 5 134703062 to 134703067 5 - TSS region transcription start site region 53673
Tssr49100 5 134703065 to 134703080 15 + TSS region transcription start site region 49100
Tssr53674 5 134703154 to 134703174 20 - TSS region transcription start site region 53674
Tssr53675 5 134703182 to 134703187 5 - TSS region transcription start site region 53675
Tssr53676 5 134703236 to 134703248 12 - TSS region transcription start site region 53676
Tssr53677 5 134703337 to 134703353 16 - TSS region transcription start site region 53677
Tssr53678 5 134703368 to 134703383 15 - TSS region transcription start site region 53678
Tssr53679 5 134703388 to 134703406 18 - TSS region transcription start site region 53679
Tssr53680 5 134703421 to 134703439 18 - TSS region transcription start site region 53680
Tssr53681 5 134703516 to 134703536 20 - TSS region transcription start site region 53681
Tssr49101 5 134703554 to 134703565 11 + TSS region transcription start site region 49101
Tssr53682 5 134703564 to 134703606 42 - TSS region transcription start site region 53682
Tssr53683 5 134703812 to 134703824 12 - TSS region transcription start site region 53683
Tssr53684 5 134711201 to 134711249 48 - TSS region transcription start site region 53684
Tssr53685 5 134714015 to 134714053 38 - TSS region transcription start site region 53685