Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:132918397-134278404

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D5Mit218 5 132937774 to 132937901 127 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 218
Tssr1654 5 132993069 to 132993070 1 + TSS region transcription start site region 1654
Tssr49076 5 133073308 to 133073311 3 + TSS region transcription start site region 49076
D5Mit281 5 133077713 to 133077826 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 281
Tssr1655 5 133140790 to 133140794 4 + TSS region transcription start site region 1655
D5Mit166 5 133146598 to 133146706 108 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 166
Tssr49077 5 133239568 to 133239572 4 + TSS region transcription start site region 49077
Gm42625 5 133443342 to 133444263 921 + unclassified gene predicted gene 42625
Tssr49078 5 133475079 to 133475080 1 + TSS region transcription start site region 49078
Gm10051 5 133475123 to 133475536 413 + pseudogene predicted pseudogene 10051
Gm17979 5 133519749 to 133520283 534 + pseudogene predicted gene, 17979
Gm36667 5 133534590 to 133598406 63816 - lincRNA gene predicted gene, 36667
Tssr53601 5 133598397 to 133598404 7 - TSS region transcription start site region 53601
Tssr53602 5 133790794 to 133790806 12 - TSS region transcription start site region 53602
Tssr53603 5 133790808 to 133790815 7 - TSS region transcription start site region 53603
Tssr53604 5 133790844 to 133790851 7 - TSS region transcription start site region 53604
Gm7902 5 133841573 to 133842519 946 - pseudogene predicted gene 7902
D5Mit220 5 133851536 to 133851682 146 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 220
Gm2404 5 133919159 to 133920002 843 - pseudogene predicted gene 2404
D5Mit141 5 133996313 to 133996442 129 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 141
Gm40339 5 134045832 to 134089532 43700 - lncRNA gene predicted gene, 40339
Gm40340 5 134050792 to 134054317 3525 + lncRNA gene predicted gene, 40340
1700030N18Rik 5 134090486 to 134091451 965 - unclassified gene RIKEN cDNA 1700030N18 gene
Gm15627 5 134098412 to 134099208 796 - lincRNA gene predicted gene 15627
Cpgi16713 5 134099120 to 134100136 1016 CpG island CpG island 16713
Tssr49079 5 134099692 to 134099695 3 + TSS region transcription start site region 49079
Tssr49080 5 134099704 to 134099760 56 + TSS region transcription start site region 49080
Castor2 5 134099748 to 134141782 42034 + protein coding gene cytosolic arginine sensor for mTORC1 subunit 2
Tssr49081 5 134099767 to 134099797 30 + TSS region transcription start site region 49081
Tssr1656 5 134139565 to 134139566 1 - TSS region transcription start site region 1656
Tssr49082 5 134141612 to 134141627 15 + TSS region transcription start site region 49082
Rcc1l 5 134148054 to 134176774 28720 - protein coding gene reculator of chromosome condensation 1 like
D5Mit428 5 134150428 to 134150551 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 428
Cpgi16714 5 134175893 to 134176917 1024 CpG island CpG island 16714
Tssr49083 5 134176340 to 134176376 36 + TSS region transcription start site region 49083
B230377A18Rik 5 134176346 to 134177709 1363 + unclassified gene RIKEN cDNA B230377A18 gene
Tssr53605 5 134176707 to 134176716 9 - TSS region transcription start site region 53605
Tssr53606 5 134176720 to 134176784 64 - TSS region transcription start site region 53606
Cpgi16715 5 134183725 to 134184779 1054 CpG island CpG island 16715
Tssr49084 5 134183998 to 134184046 48 + TSS region transcription start site region 49084
Gtf2ird2 5 134184019 to 134218146 34127 + protein coding gene GTF2I repeat domain containing 2
Tssr53607 5 134184398 to 134184424 26 - TSS region transcription start site region 53607
Tssr53608 5 134184427 to 134184439 12 - TSS region transcription start site region 53608
Gm24139 5 134204469 to 134204756 287 + unclassified non-coding RNA gene predicted gene, 24139
Cpgi16716 5 134216174 to 134217650 1476 CpG island CpG island 16716
Ncf1 5 134220053 to 134229625 9572 - protein coding gene neutrophil cytosolic factor 1
Cpgi16717 5 134221536 to 134222588 1052 CpG island CpG island 16717
Tssr53609 5 134221670 to 134221689 19 - TSS region transcription start site region 53609
Tssr53610 5 134222099 to 134222119 20 - TSS region transcription start site region 53610
Tssr49085 5 134227276 to 134227298 22 + TSS region transcription start site region 49085
Tssr53611 5 134228250 to 134228264 14 - TSS region transcription start site region 53611
Tssr53612 5 134229581 to 134229599 18 - TSS region transcription start site region 53612
Tssr53613 5 134231488 to 134231528 40 - TSS region transcription start site region 53613
Tssr53614 5 134232234 to 134232250 16 - TSS region transcription start site region 53614
Tssr53615 5 134232255 to 134232264 9 - TSS region transcription start site region 53615
Tssr53616 5 134236890 to 134236926 36 - TSS region transcription start site region 53616
Gtf2i 5 134237834 to 134314760 76926 - protein coding gene general transcription factor II I
Del(5Gtf2i-Limk1)1Uta 5 134237834 to 134688598 450764 chromosomal deletion deletion, Chr 5, Uta Francke 1
Tssr53617 5 134244174 to 134244233 59 - TSS region transcription start site region 53617
Tssr53618 5 134256916 to 134256944 28 - TSS region transcription start site region 53618
Tssr53619 5 134264428 to 134264433 5 - TSS region transcription start site region 53619
Tssr53620 5 134266077 to 134266078 1 - TSS region transcription start site region 53620
Tssr53621 5 134266584 to 134266618 34 - TSS region transcription start site region 53621
Gm43481 5 134267065 to 134270736 3671 - unclassified gene predicted gene 43481
Tssr53622 5 134269217 to 134269221 4 - TSS region transcription start site region 53622
Tssr53623 5 134270714 to 134270718 4 - TSS region transcription start site region 53623
Tssr53624 5 134275046 to 134275051 5 - TSS region transcription start site region 53624
Tssr53625 5 134276993 to 134276999 6 - TSS region transcription start site region 53625