Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:13279035-13931233

Filter by:
25 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema3a 5 13125414 to 13602565 477151 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
Tssr45180 5 13398680 to 13398696 16 + TSS region transcription start site region 45180
Tssr45181 5 13398704 to 13398726 22 + TSS region transcription start site region 45181
Tssr45182 5 13398828 to 13398871 43 + TSS region transcription start site region 45182
Cpgi15549 5 13398978 to 13399582 604 CpG island CpG island 15549
Tssr45183 5 13399325 to 13399382 57 + TSS region transcription start site region 45183
Tssr45184 5 13399387 to 13399415 28 + TSS region transcription start site region 45184
Tssr45185 5 13399495 to 13399519 24 + TSS region transcription start site region 45185
Tssr45186 5 13399751 to 13399765 14 + TSS region transcription start site region 45186
Gm43130 5 13481028 to 13484934 3906 + unclassified gene predicted gene 43130
Gm42676 5 13525723 to 13528408 2685 + unclassified gene predicted gene 42676
Gm42675 5 13548694 to 13552728 4034 + unclassified gene predicted gene 42675
Tssr1423 5 13587486 to 13587489 3 + TSS region transcription start site region 1423
Gm43719 5 13604035 to 13606233 2198 + unclassified gene predicted gene 43719
Gm43718 5 13615959 to 13617815 1856 - unclassified gene predicted gene 43718
Gm4751 5 13763618 to 13764722 1104 + pseudogene predicted gene 4751
Gm6647 5 13768662 to 13771887 3225 + pseudogene predicted gene 6647
4930568A13Rik 5 13774326 to 13808284 33958 - lincRNA gene RIKEN cDNA 4930568A13 gene
Speer3 5 13791619 to 13796819 5200 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 3
Gm6650 5 13811242 to 13814452 3210 + pseudogene predicted gene 6650
Gm8968 5 13838233 to 13839535 1302 - pseudogene predicted gene 8968
Gm35702 5 13877166 to 13877676 510 + pseudogene predicted gene, 35702
Dnd1-ps 5 13879219 to 13880182 963 + pseudogene DND microRNA-mediated repression inhibitor 1, pseudogene
Cpgi15550 5 13879369 to 13879723 354 CpG island CpG island 15550
Gm24054 5 13902770 to 13902874 104 - miRNA gene predicted gene, 24054