Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:130907682-133072343

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Galnt17 5 130874951 to 131307522 432571 - protein coding gene polypeptide N-acetylgalactosaminyltransferase 17
Tssr53544 5 130949044 to 130949048 4 - TSS region transcription start site region 53544
Tssr53545 5 130955724 to 130955727 3 - TSS region transcription start site region 53545
Gm42896 5 130958923 to 130960035 1112 - unclassified gene predicted gene 42896
Tssr1649 5 131011292 to 131011297 5 + TSS region transcription start site region 1649
Gm43165 5 131041336 to 131042970 1634 - unclassified gene predicted gene 43165
Cpgi16704 5 131081546 to 131081866 320 CpG island CpG island 16704
Gm40338 5 131084677 to 131088807 4130 + lncRNA gene predicted gene, 40338
Tssr1650 5 131095770 to 131095812 42 - TSS region transcription start site region 1650
Gm43166 5 131130021 to 131134711 4690 - sense intronic lncRNA gene predicted gene 43166
Tssr53546 5 131168579 to 131168580 1 - TSS region transcription start site region 53546
Tssr53547 5 131245962 to 131245966 4 - TSS region transcription start site region 53547
Tssr53548 5 131290046 to 131290050 4 - TSS region transcription start site region 53548
Cpgi16705 5 131306222 to 131308174 1952 CpG island CpG island 16705
Tssr53549 5 131307254 to 131307294 40 - TSS region transcription start site region 53549
Tssr53550 5 131307439 to 131307454 15 - TSS region transcription start site region 53550
Tssr53551 5 131307700 to 131307726 26 - TSS region transcription start site region 53551
Tssr53552 5 131307848 to 131307932 84 - TSS region transcription start site region 53552
Tssr53553 5 131308094 to 131308120 26 - TSS region transcription start site region 53553
Gm29681 5 131391600 to 131414718 23118 - lincRNA gene predicted gene, 29681
D5Mit262 5 131418487 to 131418617 130 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 262
Auts2 5 131437682 to 132542343 1104661 - protein coding gene autism susceptibility candidate 2
Tssr53554 5 131438810 to 131438822 12 - TSS region transcription start site region 53554
Cpgi16706 5 131439459 to 131440630 1171 CpG island CpG island 16706
Tssr1651 5 131472371 to 131472388 17 - TSS region transcription start site region 1651
Tssr53555 5 131472396 to 131472418 22 - TSS region transcription start site region 53555
Tssr53556 5 131476668 to 131476698 30 - TSS region transcription start site region 53556
Tssr49074 5 131494875 to 131494880 5 + TSS region transcription start site region 49074
Tssr53557 5 131495772 to 131495779 7 - TSS region transcription start site region 53557
3110001N23Rik 5 131524950 to 131525662 712 unclassified gene RIKEN cDNA 3110001N23 gene
Cpgi16707 5 131537100 to 131539075 1975 CpG island CpG island 16707
Tssr53558 5 131537759 to 131537791 32 - TSS region transcription start site region 53558
Tssr53559 5 131537939 to 131537963 24 - TSS region transcription start site region 53559
Tssr53560 5 131538155 to 131538237 82 - TSS region transcription start site region 53560
Tssr53561 5 131538634 to 131538641 7 - TSS region transcription start site region 53561
Tssr53562 5 131538673 to 131538684 11 - TSS region transcription start site region 53562
Tssr53563 5 131538688 to 131538717 29 - TSS region transcription start site region 53563
Tssr53564 5 131538737 to 131538749 12 - TSS region transcription start site region 53564
Gm27266 5 131577987 to 131578109 122 + rRNA gene predicted gene, 27266
Tssr1652 5 131586518 to 131586520 2 + TSS region transcription start site region 1652
9330177L23Rik 5 131593811 to 131594910 1099 unclassified non-coding RNA gene RIKEN cDNA 9330177L23 gene
Tssr53565 5 131594879 to 131594880 1 - TSS region transcription start site region 53565
Gm42589 5 131603654 to 131605404 1750 - unclassified gene predicted gene 42589
Gm42588 5 131608297 to 131609593 1296 - unclassified gene predicted gene 42588
2810432F15Rik 5 131615438 to 131625087 9649 + antisense lncRNA gene RIKEN cDNA 2810432F15 gene
Cpgi16708 5 131616219 to 131616777 558 CpG island CpG island 16708
Tssr53566 5 131616458 to 131616473 15 - TSS region transcription start site region 53566
Tssr53567 5 131616559 to 131616570 11 - TSS region transcription start site region 53567
Tssr53568 5 131616599 to 131616611 12 - TSS region transcription start site region 53568
Tssr53569 5 131616741 to 131616767 26 - TSS region transcription start site region 53569
Gm42591 5 131624842 to 131625541 699 - unclassified gene predicted gene 42591
Gm43483 5 131639948 to 131642807 2859 - unclassified gene predicted gene 43483
Gm42443 5 131694721 to 131695875 1154 - unclassified gene predicted gene 42443
Gm42442 5 131697221 to 131698353 1132 - unclassified gene predicted gene 42442
Tssr49075 5 131753686 to 131753697 11 + TSS region transcription start site region 49075
Cpgi16709 5 131819398 to 131819633 235 CpG island CpG island 16709
4930563F08Rik 5 131880269 to 131883768 3499 + antisense lncRNA gene RIKEN cDNA 4930563F08 gene
C230071H17Rik 5 131882966 to 131885938 2972 - unclassified gene RIKEN cDNA C230071H17 gene
Tssr53570 5 131885915 to 131885919 4 - TSS region transcription start site region 53570
Gm42441 5 131905695 to 131906442 747 - unclassified gene predicted gene 42441
Tssr53571 5 131930584 to 131930587 3 - TSS region transcription start site region 53571
Gm42440 5 131932396 to 131934679 2283 - unclassified gene predicted gene 42440
Tssr53572 5 131950608 to 131950616 8 - TSS region transcription start site region 53572
Gm42439 5 131954992 to 131965007 10015 + antisense lncRNA gene predicted gene 42439
Gm42438 5 131957592 to 131958565 973 - unclassified gene predicted gene 42438
Tssr53573 5 131963908 to 131963912 4 - TSS region transcription start site region 53573
Tssr53574 5 131964724 to 131964731 7 - TSS region transcription start site region 53574
Tssr53575 5 131966089 to 131966092 3 - TSS region transcription start site region 53575
Gm42991 5 131972050 to 131975886 3836 - unclassified gene predicted gene 42991
Tssr53576 5 131982475 to 131982482 7 - TSS region transcription start site region 53576
Gm42992 5 131986549 to 131993384 6835 - unclassified gene predicted gene 42992
Tssr53577 5 131993283 to 131993286 3 - TSS region transcription start site region 53577
2610011E03Rik 5 131996179 to 131998413 2234 - unclassified gene RIKEN cDNA 2610011E03 gene
Tssr53578 5 131997434 to 131997445 11 - TSS region transcription start site region 53578
Gm42993 5 132015610 to 132022934 7324 - unclassified gene predicted gene 42993
D5Mit119 5 132023577 to 132023710 133 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 119
Tssr53579 5 132069309 to 132069311 2 - TSS region transcription start site region 53579
D5Mit120 5 132090407 to 132090607 200 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 120
D5Mit216 5 132104981 to 132105094 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 216
D5Mit372 5 132127239 to 132127362 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 372
Bbaa2 5 132128044 to 132128176 132 QTL B.burgdorferi-associated arthritis 2
D5Mit63 5 132128044 to 132128176 132 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 63
Cora1 5 132128044 to 132128176 132 QTL correlation in cytokine production 1
D5Mit263 5 132168061 to 132168210 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 263
Tssr53580 5 132193382 to 132193385 3 - TSS region transcription start site region 53580
Tssr53581 5 132195103 to 132195142 39 - TSS region transcription start site region 53581
Tssr53582 5 132195176 to 132195188 12 - TSS region transcription start site region 53582
Gm42995 5 132201839 to 132203168 1329 - unclassified gene predicted gene 42995
Gm42996 5 132205069 to 132206704 1635 - unclassified gene predicted gene 42996
Tssr53583 5 132212907 to 132212909 2 - TSS region transcription start site region 53583
Tssr53584 5 132250801 to 132250825 24 - TSS region transcription start site region 53584
Tssr53585 5 132259008 to 132259028 20 - TSS region transcription start site region 53585
Tssr53586 5 132259034 to 132259052 18 - TSS region transcription start site region 53586
D5Mit264 5 132260295 to 132260399 104 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 264
D5Mit39 5 132315956 to 132316215 259 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 39
Tssr53587 5 132338230 to 132338242 12 - TSS region transcription start site region 53587
Gm42989 5 132370376 to 132372681 2305 - unclassified gene predicted gene 42989
Tssr1653 5 132383859 to 132383861 2 + TSS region transcription start site region 1653
Gm43019 5 132434571 to 132437433 2862 - unclassified gene predicted gene 43019
Tssr53588 5 132437415 to 132437425 10 - TSS region transcription start site region 53588
Gm43018 5 132439255 to 132440529 1274 - unclassified gene predicted gene 43018
Tssr53589 5 132446844 to 132446849 5 - TSS region transcription start site region 53589
D5Dcr12 5 132448943 to 132449038 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 12
Tssr53590 5 132479067 to 132479071 4 - TSS region transcription start site region 53590
Tssr53591 5 132488526 to 132488539 13 - TSS region transcription start site region 53591
Gm43187 5 132490343 to 132492739 2396 - unclassified gene predicted gene 43187
Gm43188 5 132497678 to 132499837 2159 - unclassified gene predicted gene 43188
Tssr53592 5 132499854 to 132499858 4 - TSS region transcription start site region 53592
Recrq8 5 132500000 to 74300000 -58200000 QTL recombination rate in male meiosis QTL 8
Tssr53593 5 132509196 to 132509206 10 - TSS region transcription start site region 53593
Gm43186 5 132534425 to 132535248 823 - unclassified gene predicted gene 43186
D5Mit324 5 132540953 to 132541072 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 324
Cpgi16710 5 132541395 to 132542340 945 CpG island CpG island 16710
Tssr53594 5 132542003 to 132542021 18 - TSS region transcription start site region 53594
Tssr53595 5 132542191 to 132542214 23 - TSS region transcription start site region 53595
Tssr53596 5 132542375 to 132542386 11 - TSS region transcription start site region 53596
Cpgi16711 5 132542659 to 132544101 1442 CpG island CpG island 16711
Tssr53597 5 132543136 to 132543159 23 - TSS region transcription start site region 53597
Tssr53598 5 132543163 to 132543235 72 - TSS region transcription start site region 53598
Tssr53599 5 132543363 to 132543379 16 - TSS region transcription start site region 53599
Gm28616 5 132544435 to 132545593 1158 + lincRNA gene predicted gene 28616
Gm42626 5 132546056 to 132550633 4577 + lincRNA gene predicted gene 42626
Gm36528 5 132750625 to 132756472 5847 - lncRNA gene predicted gene, 36528
Tssr53600 5 132756415 to 132756426 11 - TSS region transcription start site region 53600
Gm38373 5 132796153 to 132796440 287 + unclassified gene predicted gene, 38373
Gm25722 5 132801678 to 132801956 278 + unclassified non-coding RNA gene predicted gene, 25722
D5Mit165 5 132866133 to 132866282 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 165
D5Mit218 5 132937774 to 132937901 127 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 218
Tssr1654 5 132993069 to 132993070 1 + TSS region transcription start site region 1654